Contig Data
morexGenes
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Map Locations of contig_176496 (4561 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_176496

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_26578 3 1517 bp MLOC_26578.3 Available Available None
MLOC_26579 1 219 bp None Available Available None





CDS Structure of MLOC_26578






CDS Structure of MLOC_26579






Contig Sequence (4561 bp)

>contig_176496 4561 assembly3_WGSMorex_rbca.fasta
CCACTACATTTTTTACAAAAAATATCGCACTTTACAAAATGAATAAGCATTTCAGAAGAA
AAAAATATTCAACAAATGCACGACATTAAGCTCCAGACATTACTTAACAAGTAATAATGA
TGAAAGCATACAAGTATCATTTACCAAAACACTACAAGCTTACATATAACCAGTTCAGAT
TTTTTATAGCATTGTGTTTAACTAAGTCAGACAAGACTTGTAGCCCAGATTGAGCTATGC
TTGAGTTAGTCGTTGTTAGTATTGGGAGTAGGAGGAGGGACTAGCCGAGGAGGCACTAGA
CTAGGTAGTGCTAGGGGTAGTCGGGATATGCAAATATATATATCTCCCGATGGTCGTTTA
TGGAAGACCGGGTAAGTGATTACATTCAAAGTTTGCATGCATGGTCATTTATGGAGATTT
ACCTGTGGATTCTCAAAAGATAGCTGAAGTGAGTCAATCCATCAAGTCTAACCTGCAATC
AATGCAAGAACCAGATTTATAGTTGTGCGTGAGAAGCATTATTTTAGTATAAGCACCGAC
ATAAATGTTATTTATTTGCATAAATATTGATGTCAAGAAAACAGTAACATTTCTAGACCT
GTAATCCCCGAGTAATATGTTGAAGTGCTACTGGTGACATGTGACTGACAAAGGTCAACA
ATACCATTATTATTCAAGAAATAGGGAAATCGGTGACACTCTTTAAAGTCTAATCTACAT
GACATGGGGAGTCTATGAATGCAAAAAATCTGAATGAAGTATGCTCCGCAATGTCAACTA
AAATATGAAGAGGATTTTAATATTCACATATTCACAAATCTACAACACAACAATAAAACA
CAACATAGAACTGCATTACAATTTGCAAGCAGAAACATAACCTGAAAATGACTCAAATGA
GAATACTATGTACGCTCAGTTGTTCAGCCAATTCTTTTTGCAGGCTATCACTAATTTATT
GCTTATCAACAAAAAACATTGGTCATAATAAAGTAAATTTAAGCATATGAGAGGGTATAA
TTAATATATGAAAACATCAAGAATGGATATGATTAGGCTAGTTGCTAAGCTGTCATCCGA
TGTTAAAGTATCATATCATATTTACCACACGAGGAGTTACATAAAATAAGAATCTTTGGT
ACTGAATTCATGGTTAAAACAATCAGAATTTGACGTCATTCAGAGTAGATCTGGAGATGA
CAAAAATGAATGAACAAAACCTTATTTCACGGGCATAACACCGCATTTAATTATATTTAT
ATCAAAAATACAAAATAGATGTGTATACTACAATGGGAATCTATGTTGTACAGCGAGCCA
AGTAGAAAACCTTTGTTTATACAATCCAAAAGAGATTAAGTACATAACCAGTATGCTGGT
GGCGTGTAGACATACAATTACTAGTTTGGTCATTTTCTTTTGGTTTATGTAGGTATGTAT
TGTTAGTAATCCGGGAGTGCATGATCCTAGACCACCACATCAAACACATCACCATGCCAC
GCCACTATAAACGCTCACCACACGGAACTAAAAAGAGAGCACATGATACAAAAGTACTCA
CATGACCAATTCAACCGAGAACGTAGGATCAACAGAATTTGGACCGGGTGGTGGAGACCT
CGTAGTCTTGGCAAGTCGGTGTGGTGGCTTCGTTAGCAGCGGTGCAACATCAATGGTTTC
CGTGCATCAGACTAGTTCTCCCAACATCGCATCTAGTTCGGGGCCAAACTTCCATGCATG
CATACATGAGAACATGAAGAATCAGATTGGTAAATCATATTAATGGATATTACACTGGAT
TAAGAGAGAGGGGTAAATCCTTGGCCATTAGGGACTGGATCTGGCCGAGCTCGTGTTCGG
GAAGGAGACGACAGTCGGAAGCCTTGTACCGCCGCTCTCCACTGGAACCTCACCATGATA
ACATCCTGCGCTGTGAATTACCCAAAACGCCCTGTCGTCGACCTGCAGGGAAAAGCTTGT
GGAGGGCAAAGGCTCTGCCGCGGGACGACATGGCTGCCCCGTGAACGCCTGGAAAGGCCA
CTTGGGGCGCGGTCGATGGTGGCGATGGTCAACGTGCACGTCCTCGACGTAATGGATCAG
ATCTGGGAGAAATGAATATGAGAGACCGAGAGAGAGAGAAGCTGGACAAGAGGAGGTCAA
TGAAGATGCACCATGAGCGAGGTACCTTTGACACTGATGCAGGCGCATGCCTCGAAGATT
ACCGGTCAGCGTTCGCAACCATCGTAACCATGAAACACATAGGCAACTCCTGCTGCACCC
ATTGGGAGAACCAGAGAGGATGACGGGGCAACAAGCTTGTTGCTCGCTCCTGCAGCGGGT
AGGGATAGGGAAGGGGATGAATGATCCGTTGATTGGGGCGATGGAAGAGTGGTAGGGGCG
GCGGCGGGATGTAGGAGAGAAAGGAAGAAAGCGGCGCCGGGATGGAGGAGGATGTGGGTG
TGGCTAGGGTTAGGGATCGAACAACTAATGGCTTTGCTTATTGGGCTTTTGCTCTAGAGC
GTGAAATGGAAATATTCTATGAAAATTGGATGAAAAAATTGCGGGTGTTCCGTCCCAAAA
AAAATGTGCGGGCATGAGAAATTTTACTCCCTCCCACACTGGCCGGAGTTTTACTCCCTC
CCACACACTTTCTTTAAAGTTGCTAGTGTTACAATTAGCATAAATCATTCATTTATTTTT
AAATAGATTTTGTATCTCGTGTGTGCATCTTCGGCAAAGAATAGTTTTATGAAGAACCTA
CATACAAATACTATTTTTTTCATTTCGAACTTGTTTTATGTTTTCCTAGGATATAATACA
TGACGTAAAACAAGAAATAAAACCAAGTCCTCACATAACCAAATATTGGACCCCTCTTTA
TTATGTTTTCTCTCTTTATCAAAGTTGCATCTACATATTAGCGGTCACGAGGTTACTAGG
GTATGCATGTCTTGTACGGTTAGCGGGCGTGGGTTGGTTAGCTGGTCCAACATGTCATAT
TGATCTGATGTGCGGCCTACCAGTCAGCCAGGATGTATATCCAGTTATCTTTGACTAGTA
GGTAGAATTGACACGTAGACATGACAAGTAGGAAAAAGTATTGCTGAGGTGTCTTCCCAT
TCGCCTGCATTCAAGACTATGACCATACAATATTGTCAGGATAGGCTACAATGATGCCTT
AGCCAATGTCAAATATTTTAATGACCATCTGGTGCCATCAGATTATGACCTTATGGACAT
AAATGGTCATGCAGTTCAAGTGTTTGGACCCTCTCTGACCGTTCTTGACCATTTGGCAAA
TTTTAGTCATGGATCTATGACTAATTTGAGCGTGGTCAAAAAAATGTCATAGATGAGCAT
ATTTCTTGTAGTGAAGCATGGTGCACTAAACTATCGAGTAAGCATCCGCACATGCCTGCG
AGTCGTTCATAACGTCCATAGACGACATTGGAGCGGGTGGCGCACAAAGGGGAACATCAA
GGACATAAGCCTTTTGCGAAGCCTTGAGGATAGTCCTCACATCACGGACCCAGCCCCCAA
AGTTACTTCCATATTCTTTCAGCTTAGCTTTCTCTAGGAACACATTAAAATTCAGGGAAG
CTACTGTGCGAGCCATTCATCTACAACATAGTTTCCAAACAAAACTTCGACTATTGTTCA
TGATAATGAGTTCAATTNNNNNNNNNNNNNNNNNNCTCCCACTCAAATCAACATCCCCCA
GGTTATCCGAGTGCAACATGATCCAAATCCACCAACCCAAATCCGATCATCCCATGTGAT
GAGGTGGTTTCAAAGGTGAACATCTCCATGTTGATCATATATACTGTATGACACATGTTT
GACCTTTCGGTCTCTTGTGTTCCGAGGTCATGTGTGTACATGCTACGCTCCTCAAGTTTA
AGCCAAGTGTTCTTCCTATGCAAAACTATCTTACACCCGTTGTATGGGAACGTNNNNNNN
NNCACACCCGATCATCACGTGATGCTTCCAAATGACGAACCTTGGCGACGGTGCACACTT
GGGGAGAACACAATTTTGTCTTGAAATTTTAGTGAGGGATTGTCTTATAATGCTACCGTC
GTCCTAAGAAAAATAAGATGCATCAAAGGATTAACATGACAAGCAAATCATAAAAGTGAC
ATGATATGACCATCGTCATCTTGTGCTTTTGATCACCATCTCCAAAGCAGTGGCTTGATC
TCCATCATCACCGGCATGACACCATGATCTCCAGCATCATGATATCCATCATCGTGTTGC
CATTGCGATCATCACGCCAACTATGCTTCTACCACTATTTCTAACTCATAGCGATCAAGT
AAATACAACCTTATGGCTCCTTCTAGTTGCCGTAGTCATCGACATGTAAGTCATGATAAT
TCTATACGAAACATGATCATATCATACATAACATATATCTCATCATGTCTTTAGCCATAT
CATATCACAACATACTCTGCAAAAACAAGTTATATGTCCTCTATTTTGTGGCTGCATGTT
TTACGTGGCTCCTATGGGTGACTAGCAAGAACCGGTCTTACCTACGCAAAGCCACAACAG
T