morexGenes - Barley RNA-seq Database

Contig contig_176404

Source Contig contig_176404

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_176404 (2515 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_176404

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_26558	1	1722 bp	MLOC_26558.1	Available	Available	LOC_Os01g71080.1, FRAME:-2, EVALUE:2e-58, 13101.m07739 protein xylanase inhibitor, putative, expressed

CDS Structure of MLOC_26558

Contig Sequence (2515 bp)

>contig_176404 2515 assembly3_WGSMorex_rbca.fasta
TGATACTATTGTATGATACTACCTTCATAATGCATAGTATTATAAACTAGTATCATAGAT
GACTTCATTTATTGACATGCATGACACATAATAGCATAGCATTTAACATGTTAGGCTGCT
TCCAATGCAAAGGTGCTAAGATGTTAGCAACTCAACTTTCCAATGCATAGGTGCTTAACT
TGTTGTTGCTAAGCTCATTCTATTTAATGATTTAACACCTAAACTCTCTCATGCATTGGT
CATCTTCTTTCATTTAAGTGGTTTGCTTAGGTTCACATGTATGGCATTGGTTCTTCCTGG
GATCACCAAAGTGTTCTCTTTCCTCCTTAATTGCTATGTCATGTCATTTTTTTGCTTATG
TGACATGCTTAGCACCAGTCCACCATGGAGCACTGGGAAAGGGACTTATGTTACTCTAAT
CCTCTTTTTCTTCTTTAATTATCTGCCACATCAGCATGTTTACTATTCCCAAATATATGA
TACCACCTAAGTTACTCCCACTATGGCCAATCTAATTAGCTGCTAAGAGTAAATGCAACG
CGTCTTAAACCTTGTCTATTGTGAAAATGCACGTAAATTTAACCGTGCCTTTTTAAACGT
GACGGAGGTAATATCAATAGGTGCAGTATTACTACTCAATTGGATTTAGTAGTAAATTTT
ATTTCCTTTATTTTTTCAACATAAAGCCCTGGCACACACAGCATGCATGCAACAAACGAT
GTGGATGGATCACTAGGCGGCCTTGGTGAAATTGAAGTTGCTGCAGGTGAGCCCCCTGCC
AGGGAGGTTCGGGGTGAAGCTGAACGTCTTCTTGTCGTTGTCGAGCACCACCAGCTTGTT
CTCCATCTGGAACCCTCCGATCACCACCGCCGGCGTCGCGCCCGTGCTGCCTCCCGACCG
GACGAACGCGAAGCACGCCGTGCCGCTGTTCACCTGCGCCATGGAGTTTCCCCCCACCAC
CGTGAAGTTCGTCCCGCCCTCCAGCATCACGTCCACGTCCGGCACCAGGTACCCGAATCG
CGTCAGAAACAGCTTGGACGAGTTGTAGCACAGCTCGAACGGGGCCACGGCCGCGACCTT
GGCGCTGGAGCCCATGGCGCGGTCGAAGGCCGAGATGAAGGGGCGGTACACGTCGCCGCG
GAGCTGCGCGTAGGGGATCGTGGTGGAGAGGCCGACCACGAGCGCGCCGGAGCCGGACAC
GGCCACGCGCGCACCGCCGACGGCGATGCCGTTGGTGGCCGACACGAAGTAGCCGGGGTT
CCCGGCGAAGGGCTGCCGGAGCGGGACGCCGTCGGAGAGGAGCGTCGTGATGGACGGCCG
GTCCGCCGGGGGCGCGAGGAAGAACGGGCCGCCGCCGAAGATGGCCGCACCCATGCCGTT
GCCGGTGAACCCGGTCCTGCCGTCGCTCGGGAGGCAGAGCGCGAACGAGTTGGCCACCTT
CTGTGTTTTGGCCACCTGGGCCGGGAACGAGGCGCTGGAGCGCGCGAGCCCCGCCACGCC
GACGGCGCCGGAGGGGGCCGCCGCGCAGGTGGCGGTGGCGGCGAAGGAGACCGGGGACAG
CGGGTTGCTGCCGTCGGTGGAGTTGGCCGAGAGCGTCACGGTCGTCGTCTGCCCGCTGCA
CGGCGTCGTGATGGCCGGCGCGGAGAGGTCGAGGACCAGAGGGCGGCCGGCGCTGAGTGG
TGCGGTGTAGAGCGCAGTGGACGCGCCGCTCTTGGTGATCTTCGTGAGCAGCGGCTTGCC
GACGGTCGCCGCCGTGGAGACGGCGAGCAGGAGAAGCACCAGAGCTGGCTTGGACTGCCC
CATTTTCGGATTGTGTCTCTGTGTTGGAATCGATGCTGTGAAGGAAGGCACGTAGGTGCG
TGGTATATATACGCTCGATCTGGAGACTAGTCATATTAAGCAACGGATGGCTGGTCAACA
TTTGTCGCCATCAGTGTTGCTTCACGAACCAGAATTTCATTTTTCTACATTAATGGATCA
AGATCACATGATCACAGCAGTCACATATGATTCTCCTCTAATCCAAGATCTTGCATGCGT
GCAGTAATTGGTAGCATGCTTTCTTCTTCCTGTGTTTATACATATGTGCACTTATTCGCC
GGAGGTGATCTATCGATAGTTCTTTGTATTACACTTTGAACTAACCTAAAGGCCGTGCTT
AGGCGAAAATCGATATCAGTGAAGTAATCCCGGAACTCTAGAAATCGTGAAGAATTTATT
CCATTTTATTTATTAAATATCGCGAATATATTGGAAAAAACTCTAGAACATTCCTTTGAA
TGGAATTGTTCATTGGGTTCGACTTGTTGTTCGACAAAATAGAAGGCCTTTCTGTAACCT
GACCTTACGCTGAAAAACAACACTTGTTAGCTCTGCGTCCACTGAAACTTATGAAAAAGA
AATGTTATTCTGTCGATATCTTCAAGAGTTCTCTAACCCCCTGACTGAGAGTGCTATGAT
GGGCTATTGAAGTTCGTCCCCGCGGCACGGCTATTGATCAACCTTCACTTTCACT