morexGenes - Barley RNA-seq Database

Contig contig_176121
Source Contig contig_176121
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_176121 (7393 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_176121

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_26505	2	3031 bp	MLOC_26505.2	Available	Available	LOC_Os01g08560.2, FRAME:-3, EVALUE:0.0, 13101.m00897 protein DnaK family protein, putative, expressed
MLOC_26504	1	218 bp	AK354218	Not available	Available	None
MLOC_26503	1	1066 bp	None	Available	Available	None
CDS Structure of MLOC_26505

CDS Structure of MLOC_26504

CDS Structure of MLOC_26503

Contig Sequence (7393 bp)

>contig_176121 7393 assembly3_WGSMorex_rbca.fasta
TCGGCCGCCCGGCCCTGCTCCTCCCCGCGCGCCACCTCCGGCGCCATGAACGCAGGGGTG
CCGGCGATCGCCCGGTCGGAACCCGCCGCCCTCGCGCACCCGAAGTCCGCGAGCTTGGCT
CGCCCGTCGGCGCCGACCATGACGTTCCTCGCCTTGACGTCCCCGTGCACCAGCGAGTTC
CCGTGGAGGTAAGACAGCCCGCTGGCCACGTCCGCCGCGTACCCCTGGATGGCGCGCTCC
GCGAGGCTCCCGCCGCTCCTGGCGGCCTCGTCGGCGAGCGAGCCGCGCGGCGCGAACTCG
ATTAGTCCTTATGTCAATCCCAATTAGTCATTCTAGTTCAATCCTATTTGTTGCTCCAGG
TCAATTTTGATTTCAATGTGATGTTCAACACAGTATGCAATTTTTTTGTGTCAAGAACAA
ATATAGATGCTGACAAGGCGGATCCATAAAATACGGAGTGGAGAATAAACGTAGACATTG
ACAGAGTGGATAAAATATGGAGCTCGAATTGTTTGATTTCAATGTGGTGTTCAACACAGT
ATGCACATTTTTCGTGTGAAGAACAAATATGGACGTTGACAAGGCGGATCCATAAAATCA
ATTGTTCAACTTTGTATTTCCACATTCCAATTTGTATTTGCTTGTTATGAAGAGCGCTCC
GAAATGATTTCGAAGGCTGGAAATGTGGCTGATCTGCTAGAGTTGCTCTTAACCCGAGCA
GTCTTTTGAGCTTTGCCATTTGCCATTAAAATCCTACAGAGCCGAGATGTCAAAAAGATC
AAACATGCTTTGGAGGGTGCAGACAGAAGTACAACAAAGATAATCGGTGTGTGCCATAGA
AATGGTGCTTGCAGCCTGTCCTCAAACCATTGATGGCTATAGAAACTACAGCAAAGATAT
CGCTGACATCAGGCACCAAAATCTGAAGACGGTAACCCTGCATCCGCATCACCCACCAAC
AAGATAGCCAGGTCCAGGGACAGGCACCTAGATACACTACCGAACTCTTATCAAAGTTCC
AACACATCATACATAACCTCACAACCTAGCGTGCCACAAGACCCAAAAGCTTCCGCACCA
CCGACACCGCGAAAAACAATCAATAGCGGAGATAAAACTGCTTTGATCAACAATAGGCCT
ATGCCAAGGAAGGATCAGGTTCATCGGTGTCCATCTGCTCGGCTGCAGGCTGCTCCCAGG
CACCTCCCTCACTGGCCGGCTCACTAGCTTCAGTGGCACCATCTGGCTGCTGCTCCGGTG
TTTGGGCCTCTGGTGATGAAGTTTCGGCCGGGGGTGGGGTCTGTGGCTTCGGTGCTGGCT
TTGGCTTTGTCATGATCGTTTTGCAAAATCTGTAATGACAGAAGGTTTCAGATAATTATC
CCAGACCCTAGACAGCATGACAGATGGTTGTTATGTTATAGCAAACCAACCTGTCAAGTG
CTTCCGCCTTCTTCTTGAGATCAGAAACAAGGAGAGCAGGGTCAGCATGCTTTGGTAAAG
CATCCTGCTGCTGTTTTTTCTCAAGCAGCCAAGTCTCGGATCCCGAGCACTCATTAACAA
CCTGTATGTAACACACACAGGTTAGCAACTGAAAATTAACATTACCTCTATATGTCTCCA
CGACAGTAACAATAATTGTTTGCCAATGATTACTATACTTTAACGGCGAGCATTTCTAGT
CCTCTTATAGGTTACAGTGCAATACCTTTTGTTTCTCCAATATGTCGATATGATCAAACT
TTGTGTCACTAGACAATGCAGCCTCCCTGAAACTGTGGATGCAGTACGATAGTTGTTCAA
TAGCAGGACCTCTTTCTTCCCACTCTCTGTAGCGCGCCTCGATAGGGCCACCAACCTGAA
GGAGAATAAAGTTCAGCCCTCCAAAACTTCAGAATACAATAAAAAAAGGATCTATCCATG
CAACATAGTAAAGAAAGGATCTATCCATGCCTTTTTAAGTTCTTCCAGTTTTGCAACATA
GACTCCCTTGGTTTCATCCTCGCCATCTTCGTACAGCCAATCCTCAACCTCCTGAAGCTT
AGCCATCAAAGCTTCTTTGTCCTCCGATGTAACATAATCAGAGTACTTCTCATAAAGCTG
AAATACAAGGAGATAACATCAGGTACAGCACACCGTTACAGATTGATAGAACATCACCGA
GACATGCAATCCAACATACCTTGTTACGCATGTCGTAAACATAAGCCTCCACGGCATTCT
TCTTCTCTTTAGTTTCTTCCATAACTCTATCTTGAAGAGCCATTTCATACTCTTTCTCAA
CAGCTTTCTCCAACTCAGCAGCCCCCATTGCACCATACACCAATTCCACAACTGGGACAT
TGGTTTTCTTGACTTTCTTTTTTGCTAGCTCGGTCTAAAATAAATAAAATAATTTAATAA
ATTGCATGTCTCGCCCAAAAAATGAACAGTGCTTTTCCCAAAATTATGCATGCATGAAAC
TAGAGCACTAGCCTGTTCCTAGCAAGAGCAAATCATGAATCCTTTGGTGTAAATACCATA
TGGAACATCTAAGATACCACTAGTAACATTCGGAATCAGTATGAGGAGGTTTATTATTTA
TTGGATGGATTAGAATTAGTGTAAGTAATTCCCGGTAATGAGACAAATCAATACACCCTA
GTGGTAAGCATCAATTTAAGCCACATAGAGGAATAGCTCTTCTCAACATGCTAAGAGCAA
AAGACCACAATAATCCAAAACTTTGTTAATTACCTTGGCATCAGTATCCATAGAAGCAGG
TTTTTCCTCAGAATCTTGTGCCCCATTTTCAGTAACACCCTCAGCAGTGTCGGTAGTACC
TTTAGGTTCCTGCATATTGACATCAGTGACATCCGTCTCCATTTTGTTTGCATCCTTTGG
CACCTCACTTGTAGCTGAAACTGGAACTTCCACTTCCTCCTCCTCCAGCATCTGTGTAGA
AAAGAAAGCGTACTAACATAAGAGAGAAGTTACATGTTCTTCCAGAGGAAGATGATAGGG
CATGGTATTGCAAGTTACCGTCGCTGATTCAAGAGAGACTATTGCATGAATGTTGAGACG
AACTTTCACTTTCAGTTTTGCCTTCTCACCTTTGCTGGATTGGAAAGGGCCGATCTGCAT
AGGGTTTAGCACAAAAATCAAATCAGTAACCATAAAAAACTGCTCAAGTACTGCAGTGTA
TAGGACATGGTATCTGCATAAGATGGATTAGATTTTAAGGTGGTCTAGCAGTTGAATGTG
TATTCAGTGACTTATGAAAAGGTTTATTATGTTACCTACCGTGTAAGTGCTAATTTTTTG
TGTTTCTTGCGAATCTTCTGTTTTAACATTCAGAACATCCACTGCAAATGTATTGGACCT
ATAGAAGGTCAGAGCTTTGACGCTCGGGATCGGGTTCCCCTTTGGAAATACCACTGTTTG
TTGGGGCTCATTGTTCTGGGAATCTGGTTTCCATGATAAAGCGATTGAAAAAGGAAAACC
TTCGTTAACCTGCAAAATATCAAGCCAATATGATAGTTAGAGGTACAGGGTGCATTAAAA
ATGAATTTCATGTTATAACACGTCACTTTTAGGAAGTCGCGGGATATAACACCATGCCCA
CGTAGCTTGTATCTAGCACCCCCAATGTGAAGCGAAATTTAAACAAACACAAAAGTACGG
TGCCTTAACAGAACTCAAAGCCATCAAAGGAGAAGTTATTCAAAACTTGCAACATTGCTA
TATTCAAAAATCAAAACTTGCAACATCGATATAAAATAAGATTAATTTAGTTAACTGTTG
CAGATCTGTATTAGAAAGTTCATGTAAAGCTAGTCATCTGTGACACCAATGAAGCCATCT
TAAAGACATATTATTTATATATTCCAAAATGCAATCTAGCACTTAGGTAGAAGGTGGAAT
GCAGACTAGGTTTGGGCCTAGAAGATCCTACAAGTGAACATTATTCTGCTTGAACTGCAA
TATATCAACATAATAGTTCCTGCTACACATGTGTCAAATGAAAGCAACATGAGATGAAGA
TATCAAAGGTTGACATAATAATAATAAATTAAAGAAAGCAGATGAAAGATGTTCTAGATT
TCTGAAGAACATCAACTTAAAAGAGAACATTAAAAACTATCTGTAGGTTATAATAGTGAT
GAAAATGCTAGAATGGCAATAAAAAAAGACACAATAAAAAAACATAGACAAGTTAGTACC
TGGAACTCCCGCACTTTGAACGTAGGACTAAGTATAGCACACTGAAGAGCGCATCCTCGG
GCAACACATTCACTTGCATTCATAGTTCTCCGAGGTTCCTTTCCAAAGAATTCAGTGATA
ATCCTGATTATAGCAGGGACACGAGAACCTGATCCAACAACCTCAACAAAGTGCACACTT
TCTGTTGTCAAGCCAGCTTCGGCCAAGGCCTTCTCCAATGGCCCTTTCACACGTTCTAGT
ACTGGGGCGCTGATCTGTTCAAATTCATCCCTCTTGATGAAGCCTCGCACATCCTTCTCA
TCCATCAAGCACTCGATATTCATCGGTGCCTCCGGATTGGCGCTCAGCATCTTCTTGAGC
TTCTCACAGGCCACACGCAACCTAATGCAGGCACGGGCATTCTGGTAGACATCAACCTTA
TACTCCTCTTTAAATTTTGCCGCGAAGTGCTTAAACAGGGCTTCATCAAAGTCTCTTCCG
CCAAGAGACCGGTCATATGCGTGGGACAGCATCTTCAGTCGCCCCTTCTTGTACCCGACA
ATGCTTACCTGCATGCTGGCATGCCCGACATCAACAAATGCGACGTTCAGCTGATCATTC
TCAGGGAGATCGGTCTTATAGATGCCATATGCCAATGCAGTAGCAGTGGTCTCATGGAAC
AGGCGCAACGGGCGGAGACCAGCAATAGTGGCAGCATCGAGAACCGACCTACGCTGCAGG
TCAGTGAAATACACCGGGATACCAATGCAGCAATCAACAACAGCTGACTTGAGGTTATCC
TCAGCAATGGCCTTCAGATTAGACAGCACCATGGCAAGCAGCTGCGTGGGGGTGAAAGCA
TGCTCCTCCCCCAGATATCGGGCCTGGACGAGTGGGAACCCATCAGGCCCCTCAGAGACA
AGAAATGGGAACGATTGCAGATCGCGCTGCAGCTCGGGATCAGCGAACTTGCGGCCCAGC
AAGCGCTTGATCTGTGAGATGGAGTTGTTGGGGTTCATGGTGGAGTTGGCAGCGCCTGCA
GTGCCGATGAAGCGCTGCTTGTCGCCAAAGCAGACGATGGCAGGGGTCTCCCGTTTGGAT
TCCTCATTGAGAACCACGTCGATGCCACGTTGCCGTGCCACCCCCACAATGCAGCTCTCG
TTGCCTAAATCAAACCCAACCACGCTCATCTTTGACGCGCGCTTGCAGCTCCCGGCTACC
GCTGGGTCACACGATCAGATCGCAGCCTGCACCTGCACAGGGGGGGGATCCACAAGTCAA
ATACCTTGATAAATCTCGGCATATAAACCTCAAATCTATTGGCTCCATGCGGCAAACCCC
GAGAACACGTCAAACCCCGATCCAAACCCTCAAAGGCCCTAACGCTACGCCCCTACAACA
TCACGAACTGATTGATCTGCTGATAGAGGTGAGGCGCACTTTCACCTTCAAACGAAATCA
CAGAAAGTTACGATCAAACGGAGATCGATACCGACGACGACGAAAGAAACGGCCTCGGTC
GCAGCGAGAAATCGTGGAGGGAAAGCGTCGGAGGTGGGATTGGATCGTACCGGCGGTGGG
GAGGGCCGAGGCGGAGTCGTGGGTGCTCCTTGAAATTTCGCTTCGGGCAGCCGAGGCGAA
GACAGGGCAGCTCTTTCCTTTTGGCGAATGCGAGTCGCCGAGGCGGTGGTATATGCGGCG
CCGTAGTGGTGGTGCCGGTGTGGCCGCGGGTCTTCTTCTTCCTTTGAGAGGGCTCCTGAA
TGTTCTGGAAGGTGGAAACGGAAACCCTTACACTTGGACTACTCTCGTGGGCCGCCTACC
GTTGTTGTTTTTTATCAATATAAAATAAAATAGGCAGTTGCTGATGAACACTTCAATAAA
ATAAGCCTTCATATTCATAACTCATCAGAGTTCAAATTCTGTTGCTCATATTATTTTTAA
AATTATTTTAGAATTTTTGAATAAACACGACGGTGATTTTCTAAATCTCAAGATCATATG
TCGGTTTAGTCTCTCGGAGATACTCATAAAAATAGGATGTGTATGTGTTTATAGAAATGA
GTGTATACGTATTTATGTGAACATTTGTGTTTGTACTGTGCTGTATTAAGAAAAGATCGT
TACCCAAAAAAGACTCGAGAAGCTTTGGGGCCTCTTCCCTTTAATAAAAAGGGGACCTCG
ATGTATTTACTCTTCACAAAAATTAACAAGATCACTAATTGAATTACCTAAATGATAAGT
GCTGCATGTATGGCATGAAGCACTCTGGCCTGGAGTTTTTTACAATTAAAGTTACGATCA
TAAAAAAATAGACAGAAAAACCTGAACTTGCCATGTAATAAGAAAGTTAACATGCTTAAT
AATTAAAGTTGTCATTTTTGCGTCACTAAATTTATCATAAAAAATGTTCCAAGTTGCCAT
ATCTTCGTACCACACGTGTTGATATTAGGATCCAAATCAAGGTGCCTAAAATGATAATTA
ATTATGGTATTAAAAATAATTAAATTAAAAGGTACTAGTCCTCATTTTATTTTGGGTCAA
AGTTGAACCATATATTTGACAAGCAAAATGTTAATGCATGTCACAAAAAATATAATGTTG
AATTCATATTTGAAAGTAATTTCCAATGATATTATTTTTACTACGTATAACTTATACTTT
ATTGATGACCTCCAAGACACATATGGTGGTGTAGCACTTTTGCGAAAATATCCTAAATAG
TTAACGTCGAAAATAAGAGCAGAGGAAAGTAATTACATATTAGTGGAATCAGATAATTTG
CCATCAATTTATTTTTTACCTTTTTCCAGCTGACGGCAAAGAAGTTCATTGTCGTAAGCT
TCCACAAACCAAACGACAAAGAACGAACTCATGGCAAATATACTATTTGTCATCAATACA
TTCTTTGTCGTGTGTTGGCGGACGGCAAAGCGTCTAAAGGCAGACGACAAAGAGCCCGGT
TGGGCCCCACTGGACCGTGGAGCTCAGTAGGTGAAATTGACTGACTGGATGTAATGTGCT
AGCTCGTTGTCGTCTGCATTAATACTACTAGACGACAAAGAGGATGCCCATGTAACGTTG
GTTCTCCCACCCCCTCTCACTCCCCCCTCCCCCTCCCCCCACCTTCTTCCACACCTGTAA
CCGTCGGTGTCACCCCTCCCCCAACCACCTTTGGCCACCACCGTACCCACCCACGACCGC
ACACCTCCCTCCC