morexGenes - Barley RNA-seq Database

Contig contig_1759338

Source Contig contig_1759338

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1759338 (583 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1759338

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_26485	2	437 bp	MLOC_26485.2	Available	Available	LOC_Os04g59000.1, FRAME:+1, EVALUE:1e-13, 13104.m06215 protein protein kinase family protein, putative, expressed
MLOC_26486	1	558 bp	MLOC_26486.1	Available	Available	None

CDS Structure of MLOC_26485

CDS Structure of MLOC_26486

Contig Sequence (583 bp)

>contig_1759338 583 assembly3_WGSMorex_rbca.fasta
ATTGCTCTTTGGCTGCAAACCTTTCTTTAAGACGTTCCTTAATCTATGAAGATAGTTCGA
GTGCCAATTGTTTTCTGTCTTCGATCAAGATGAGAACCAGCTGCATAATGTCAGTTGAGT
TCAATCAGGAACGCTGGTGAACAAGGCGGAGGACGTGCTGCTCCACCGCCGGATCCTCGC
CGAGTGCGCCGACCCCGACAACCGCCCCGTCTTCCACGCCCGATTCCTAAGGGTAAATTC
ATCCATCCATTAAACTCAGGAAATCTTCCCTGCACACTGCTGCTTACTGTATTATCATGC
TCCTCTACTTCCATGCGCAGTACCTTCAGCAGGACAAACCTCTGGCTCCAAATCAAAACG
GTAATTGTGGGGGATCCCTGTCTTCCATGCTCACATCGAGGTCGATGTAGTAGCTGCATC
CCCGGCGCGCGCGGACACAGACAGACAGACAGAGAGAGGGGTGTTTGTGAGGTGAAAACG
CGCGCGTGGATGGGGGGGTGGGCGGAAAGGACGGACCTTGGCAGGAGGCGTTAGTAGTGG
TCCTCGAGCACGCGGTCGAAGAAGGGGTCGGCGAGCGCCTCCT