Contig Data
morexGenes
Links



Map Locations of contig_174379 (6192 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_174379

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_26248 1 3325 bp MLOC_26248.1 Available Available LOC_Os10g02930.2, FRAME:-3, EVALUE:5e-85, 13110.m00202 protein helicase SEN1, putative, expressed





CDS Structure of MLOC_26248






Contig Sequence (6192 bp)

>contig_174379 6192 assembly3_WGSMorex_rbca.fasta
AAATAAGGAAAGGGCCGCATCTTAGCGGTTACATGGGGCTTCACGCTCGGATCCGGTTGA
CGCGCGCTGCCGATGTGATGCGGTGGTGCTGGCCGTCCTAGGCTGTGCGGGTGGCATGGC
AGATGCGCGTGCGGGGTGGACGTCGTTTGTGGTCGTCGGAGTGTGGCTGGAGCTGCTGCT
CGGCTGGGTGGTCGGGCCGATTTCTGGCGAGGTCTGGTGGTGTGATCCGGCCAGCGTGGT
GCTGGGTGGGGCTCCGGTCGGTTCTGACCCCATCGGGGGGCTGCCGTGGCTGGGGGTCGT
GGCGGTTTGCGTCGGCCATGCTTTGGAGGTCTTGTGTTGTCGGGGCGGCGGCCCCGGATT
TGGTGGTGGTGGCTTCGGCCAAGGGGCGCGAGTCTGGTCATGATGGATCGTGGGATCCCG
TGGTCAGAATGAGGTAAGCCTCGGCAACTGGTGGTTGGTGGGCGGCGGTCGGTGGCGGCA
GGTGTTCGGCGCAGCTCCAGGAGAAATCTTTGCTCCGGTCTTCATTGGAGCCGGCGACGG
CGACGCTCGTGGACGTCGTTATCTTTTTTGGAAGCGTCGTCGTGGAGGTTTGTTGCTCCT
CCCTATGGCCTGAGCTCCGGAAGGAAACCTCAGATCTCGTGGATCGGGTGATGGAGATGT
CATTGCGTCTTTTTCCTTCTTGGGGGCATCGCCTCGAAACCGGCTACGACTGGGAGACTA
GCATATTGCGGCATCTTCACCGTGGTTGGCAGCATCTTCGCCACATGGTTTGCTAAGGTG
GGGCGCTGCTTACTGTTTGGCAATGATGATGGCGTTGCGAGGAGATCGGGTCGCGACATG
GACTTTGGTAGTCGGTTGTTTCCGACTTATCCAAAGTGGTCTTCCGTGGGTTGCTTGGTT
GCTTGAAGTCGGAGCTGCGGTGGAGCAAGTTCATGCGGTGACGATGACGGGCGCTCGGTG
GTCGTTTGTGAAGGACACGGTCGGCGTAAGTCCCGCATATTTCCCTTGTGATACTACTTG
TCAAGGTCGGAGTTGTCGGTTACTCGCGTGTGGTTATCCGGTGGCATGTGCTGTCGTGGT
TTCTTTTCAGCTGTTTACGAGATGGCTTTGATGTTGGAGCTCGATGGTGAAGTCGGAGTC
ACTCGTTCGAGGCAACCGGTGATGACGATGACGCTTGCGACTCCGAGACGGATGTCTTTC
TACTTTATAGCTTCAGGTCCCATGTCAGTGGCCATGTTGACCGATGATGCCCATGTCATA
TGGGTTGTGTATTATATCGGTTTTAACCCGGTTTTCCATCAATTAACCGAATAATTCTCT
TCTTCTTAATCAATGAAAGTGGCAAATCTTTTGTCTAGTTTCAAAAAAAAAGTTACTTAT
TCAACTTCGTCATCATCATCGTCAAAGTCAGAAAAGGATCAAAGGTTCTTTATTCAGCTT
CGCCATCACCGTCACTAGACAATGAACAACTGAAACACCTAAGCTACTATGGTCTAACCT
AAAGCTACACGATCCACATGCGTAGATCCGACGAACCAACTGACGGCGGCTAGGTACACA
TGTGATTATCCCAGCTGTTAAACACATTAGTACTACAGAGGGAGTACATAATATGCAATC
ACAGAAGCATCGACCGACGCAGTATCCAAGATTCAGCCATGCCAAACAGAATACCTGAAG
CAGATGGTGGGGTTGTTCTAGATGCGGATTTCTTTCTGTACACACAGACGGAATTATGCA
GGCATTTCTTTCTGTACACACAGACGGAATTATGCAGGCGGTCTACAACAGCAAACCAGT
CATACATGGCAATATGGCATATCTAGTCGCAAACCTTTAGCCCTAACCCACCATATGACC
GTTTCGAAATGACCTAGCCCAGATTTGCCTGCTATAGATCAGGTTTCAAAATGAAAATGC
CCGCTAGCGTACAATACCCAAATCTATAGAAAGTAGACTAAAGCAATGCCAGGCAACATC
TGTCCAGATGACAGCCTTGTTCAAATAACTTGGTCCTCCATGGTTCCACAACGCCGAGGG
CTTGAGGCAGCCATTTGTTCAGCAGCCAGACAAAATCAAGAGCCATAGCCCATGTCCCAA
TACGACAGCATCCTATTAGTAGCAACAGGCAACATCCTGCTTCATCACCATTCTTCCATG
CTGCACCACTACAAGCAAAAACCTGCAGACATCAATTTGTTCTCTTTAGGCTTGTCTCCT
CGGATCATTGGACGGATTCGGACCCCTGATCCTCCCAAACTGCAAATTATCTCTAGATCT
ATCACCAGGATGCCCCACGTCATTGGACAGATTCCGGTAACTACCATTTCTCGCAACAGG
GTTGGGATGGCCAACCTCACCGGCTGTCATGCCCATCCTGGGTGCCGGAAGCATGTCGAA
ATGCCTCGGTCTCGGTCCACTAGTCCTCATGTACCTTGTGTTGCTTGAAGAATTCAGGCC
CCGGGCGTTTGAAAAGTTGTTCATAGCTAGGAAGTCACTCGGGATGCTGCTCAAGTCCAT
GAAACACTTCCTCGCCTTTGCATCTGCTACCAGTGCCGCCCAATCCTCTGACTGCATGAG
GGCATTGGCATTACCAATAACCTAGAAAACAAAACAGATATATTAGTACGCCGGCACAAA
ACTAGCAGCAAAACAACATTAGTACATTGCTCTTGATGCATATTTTAGTTAGGAGGACGG
AGGGGATACCCATAGAGCTCTCCTAGCTCGAGTAAGAGCAACATTCATACGGCGTATATC
TGCAACAAAACCGACACCGTGGTTTGAGGCACGGACACATGACATAATAATCACATCACG
CTCCTGGCCTTGAAAAGCATCAACTGTGTTTATGTAGATATCTTTCCCTTCCTCGGTATT
CATAACTTCCGCAAATTCTCGCTGAAGACACTTCAACTGCAACTTATAAGGAGTGATTAT
ACCAACACATGCTCTCTTGCCACCATTAGCTCTCAGGAACTTCTGAAGATGCTCATACAA
ACACAACGCAAACTGTGCTTCATGGACATTCTGGTATGAAGATGACCCATCTCTATGGGA
CTCACGTCCATGCGAGATGTCATAGAAAATGTAAGGTGCCATTAATGCATCTCTATAGAA
TGCCTCATCGGGCAAGTTGGCGACACTTTCACTATCTGTAAGGTGGCCTTGGTAGAAGTA
TCTTGATGGAAATTCACGGATCTGGGGATGCATCCGATATTGCACTGACAGCAAAATGGT
AGGGCAACCAGCTTGCTGAAACCTCTCGAAAAGGCTCCTGCTGTAGAGTAAAGTTCCAGC
AGCTTTGCTAATAACAGTGGCAGGGAGCTGTTGTGGATCACCAACCAAGACACATCTAGC
TGCACCAAGTGTAAGTGGAGGGAGGACTCCTACTTCACTGGCCTGAGCAGCCTCATCAAT
AACAACCATATCAAAGCCATGACTAAGGGCAGAAAATAACTTGCGACCACTGCTTGATAC
TGTAGTAAAAACAATTTCTGCTTCACTGGCAAAACTAGCTTCCAGACTAGCTCTAGCATC
TTCCAGATTGAAGTTTCTGCCAATACGGAACCTGCTTTCTAATATCAACAGGCGTGACAT
CTCAACCAGTACTTTATCCCTGCTTTCCACAGAAGCAGCAAGTTTCTGAAGCAGTATATC
ACGGTTACGATCCCTTTGAGCAAGCATATCTGGATCTACTCCAAACGAACCCTGAGATAT
AGCAGCCTCTGCAACCATATTAAGTTCCCTCTGCAGAAGTGCTATCTCTTGTGATAGCTG
TTGTTCACGGACTTTTAGTTGATGCAGCCACCCAATTACTTCCTCACGTCCCTTCATTAA
AAGCTGGTCCGTCCGTCGCTCAACTGAAACAGCTTGTGCAGCACGGGACTGTGAATCAAC
TCCAACACGGGCAACATCAGGGCGGTAGACCCTCATCTCACCATCTATGAAACCACGATC
TAGAACACGAGCAAGCAGCTCATCTGTTGCAGCATTTGATGGGGCACAAACAAGCATCCG
CGGTTTGGGGCAAAGCTTGGGAAGAGTGCGGAACAGGTTCTGATTCATGCTCTGCAAAAC
TTCATCCATTGAGCCTGCGGCAACAGCTTCTGAGGCGCTGCTACCACTACCAGCAACTTG
CTCGTAACTTTCAGGAGCAAGCTTTTTTAGCAGAGCAGCATAGTAATGTTGATACTGAAC
AAGATGAATAACATTTAACATTCCCCAAACAGTATGAGTTTTCCCTGTCCCTGGAGGACC
TTGTACCAATGTGAAAGGCCATGGTTCTTGTTTCTTCACTACTCCATTGCCTGTGCCAGC
AGCTGTATGCATTGCAGCCCAATGAATTGCTGATAGCTGAGGCCCATTGAATGTATGATG
GAGATGACAAGAAAAATTTGGAGTGAAGCAATCAGGCATCGCAGGTGGCTGCTCTTGGTA
CTTTGGGAAGTGTTCTGGACTCGGCTGAAGAATTGCATTTTGCATCTAATGGAAAGATTT
CGATCAAAACCAACTGAAAAAATATTAACCAAGAAATCCAGATAGCATTTAACTAAGTAC
AGACTGTATATCACCTGCACATTAAGACAGCGGAATGCGTGCAACGCAATATACTCCCTC
TGTGTTGTTGCAAGAGAACCGAGACCAGTTAGATACCAGGTGCTTTGAGGTTGAAGTTTC
CCTAGAACATTAGTCCCACTGTCGCAAATACAACACAAAAAGAATAATAAGACGACTGAT
ACAGAATTCGGTTAACAAATGTATAAACAATAGATAAACAGTCAAGTTATAATGTTCCTA
ACATCAAGCAAAGTTAGCAAAGAATATGACTTGAACCTATCAACCTACCAGCTAAAACCC
AAAAATAAATATGCCGATGAACCTTATGACAGAGCAAGTTCGGATGAGTGACGTTTAGCT
GCGGTGTAGCTTAAATCCATCCAATAGGGCAATATGCTGCTATGGTTGTAAGCATCAGGT
ATGATCTAGGAAGCAACAATGAGTTGCAGAGCAGATGTTGCATGCATGTCCAAGAGTTCA
ATTTACCAGTGAGTAGAAAAAACTGCATTGTTGACAAGTAAACGTAGATACAGAAAAAAC
TATGCCTAAAACAATAAATTTATCTTACAGAAAATCTCATTTATTGTGGATACTATATGC
ATGTATGATGAGAGCAGAGTGAAGTCTTAATGAGCAAACACCATCCGAGATAGTATTAAC
TTTCAGAGTGGCAGATTGTTAAAGAATGAGCATTCACAATGATAAATACATTTGCAAAGA
ACTCAGCAAGGCTCCAACAAAACCAAGTTCAACAAGCACTAGTTCAAATGCATCCAATAT
GTGGTTAGCAAGCTAAGAAACAAATAACAGTGATATCGGAAACATCAGATTACCAGCTAG
AATCAGACGGGTTTCCAGCATAAAAGCGGACAATTGCTCCAATGGGATCACGTGTATCAG
TAGGCATATGGCGCCGGACTCTACCAACAAGCCGTCCACACTCTGACTCGGCATCTTTAT
ATGAACCAGCAGTCTTCCTATTAGAATTACTTGACTGTGGAGCTAAAAAACAATGAAATG
GGTAAATAAGCGGAGTTGTTAAAACACTTTCTCGAGAGTAAAATATCTGCTCGCTTAATA
AACTACTAAAAGAAGAGTAAAGTAGAGCCACCTGAATCAGGCCGAGGGAATGACAAAACT
GCAACTTCTCCTTCTTTAAAAGTCCATTTATATTCATGTGCTGGTAGAACAAGAACATCA
TACCACCCTGGACACATTAATCATGATTCAGTCAGGTGATGATTGCATCAAGAAACGAGA
GTGCATACTACAGAACATGCCATGAATAAAAAAGTGGAAGATATACCTCTTTCACGCCTA
TCCACGGTTCTAACGCGCACCATTACATGTGCATCCCTTGATACAACCTCAAGAGATTCC
TCATAAGAACTGTGTAGCTGAGCTCTGCATTCCTCAAAAAGCAAAGGCTCAAAGACTCTA
ATGTACTCCTCAGCAGATTCAAAGCTTCCAGGAACAGATTGAAGTTCCGACTCCTCTGCT
TAGATAAAATGTGCTTTGTTAAATTACAGGCACACGCGCAAAAATAGTCTTTTCATCAAT
GATGAAATACTCCCTCCATCACAGTTTATAAGGCGTACACGTGTATCTAGGTCATCAATT
TGACTTATATAA