morexGenes - Barley RNA-seq Database

Contig contig_174098
Source Contig contig_174098
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_174098 (4983 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_174098

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_26187	1	813 bp	AK249319.1	Available	Available	None
CDS Structure of MLOC_26187

Contig Sequence (4983 bp)

>contig_174098 4983 assembly3_WGSMorex_rbca.fasta
GTACAGAACGTGCAATGACCATACTACCCTTATACGTTTAGTGAGGGGGGGAGGGTTGCA
CCTAAGAAAACCTCTCATCATGATTGTGATCTACCTACCCTAGATGGATCGATTGCTTCG
CTCTGCAAATAGAAGGGGTCACCCTGCCAGGAAGATGATGTTTTTCATGGTTACGATCAA
TGGACGACCTTCCCGAGGTATAGTTGAACTGATGATTTAATTTGCAAGCAAATCATCATA
GTCTGTGCTAGAGGTGCACATGTCTACAATGAAAATGAAAAGCACTACAAATGAACTCTG
AATAGGTTGAAAGTTGTCATGGTATCATCATTTCACTCACATNNNNNGTGCTAAAAAGTT
AAGAGGGTTACGGTAAAAACTGGATGCNCTTCGTGTACAAAATGGACAATTTCTTTCGAA
GTATCAGGATTTCACACGAAAACTCACTTGCTACAAAGGGATTTCATTTTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGCGTTCAACATGCACCATTCAAAGTCACATCATCAATTT
CCAACCCTTTCTGATTTCATTTGTTATTTTGTTTCATGCATTTACTGATTATATTGAGCT
AAATGACCCTGAAATTGAAAAAGGGACAGAAGACTCACCTTTTATCCCTGTTCTAGATAC
GAAACGGGACTAAAGGCACTGCGCCAGGAGCAAGGACCATTGGTCCCGGTTCCTGTGTGG
AACCGAGACCAAAGGGGTTAGATGAACCGGGACTCTAGTCCGGCCGACGTCGTGGGCTCA
AGAACCGGGACTGATGCACCCATTGGTCCCGGTTCGTAACAGAACCGGAATTAAATCCCT
TCTCTCGTGTGGACCAAAGCCCTGTTTTCTACTAGTGTGTCAATGTGGAGATGATTTGTT
TTTAGATCTTGAGGTGACGGGAACGGATTGGATGCATGTTAGTCTGCTTGTGCTTGTTGT
CTACTCTCATCACATCATCATCATGACTCTGATGTACCTACCCTAGATGGATCGATTGCT
TCGCTCTGCAAACAGAAGGGTTCACCCTGCCAGGAAGATGATGTTTCTCATGGTGGCCAG
TAATATGATCAATGGACGACCTTCCTGAGGTATAATTGACCTGATGATTTAATTTGCAAG
CAAATCACCGTAGTCTGTGCTAGAGGTGCACAGATCTGGATTGTAGCCTTTTTTTTCTTG
CCGGATAAAACTCGAAGAATAGTTGGGGTTAGCAAGTTACACTGGTTTTGACAATTTGAG
CATTTGTGGAATGTTTGGCGACATTGCCAAAACCTTAGCAATTCAGCTGTAAGTGCGTAA
CCAGTTCTCCCCGAGAGAGAGAAAATGCATACAAGCTTCCATGAATGGCTTCCCATTATC
ATTGTCTTAGAACGTTCATATTGGATTAGAGTCATTGCTCTGTGCTTCATAGTTCCAGTT
GTAGTGGGAACTTGAATTACGTATGATGGAAGGCTGTTCTTTCTATCTGGCTTGTTAAAT
ATATTTTGTGTGGCCCTGAATGTTCAGATTTTCTATTCATACCCTGTCTAGAATGTACAT
CTTTATTTTCATTTTGTTGCTATACTGGCTCTTTTATTGTATCTGACTGTGTCACATTGT
CTGATATATCATCATCAAATGAGCATTTGAATGTTGACTGGAGCAAGTGCACAGAAATAA
GTCTTGTGGACTGCCATATACCCAATTTAAGTAGCATTGCAATTGTATATTGGTACTTGG
TAATCGGTATGAACTATGCATATCAGTGCGTGGTCTTCCTTTGTACTATGTCAATACAAC
AAGCTTTTGCAGTCAATTTATAAATTTCTTTTATAACCCCAAGAATATTATCCTGTGCTT
CTGTATCCAGGACATCTGTCGGCATATTCATGCCCTAATGCCACTGAGAGACGCTGCCCG
CATGGCTTGTGCATCGCACACATTTCTGAGATCATGGAGATGCTACCCCAACCTTGACTT
ATGTCCGAAAATACTTGGTCTGAGTGGAGCTGTTATTGGAAACGAGGAAATGACAAGAGA
TCTCATCAGCAAAGTTGACCATATTCTTAAACATCATTCGGGTGTTAGCATGAAGACACT
AAATCTTGGACTTAATGACTGTAACAGGGTTGATTCCTGTTATATTAATAGTTGGCTTCA
TATTGCTGTTACAGCAGGAATTGAAGAACTCGACATTTGGCTGCCTCATATTCCTAGGGA
ACCATACAATTTCCCATGCTCACTTTTATTTAATGGGGGGTGAAAACTCAATTCGGTATC
TTCACATAGCCATTTGTGCCTTTCGTCCCTCGGCCGAGCTTGGTCGTTGGAGAAGCTTGA
CAACGTTATTTCTGAGTAAGGTACGGATTGCTGATGGTGAGCTAGAGGGCCTTCTCTCCA
ATTGTACTGCATTGGAGCTTTTGGGACTCCTGAATTGCTGCGAGATAGTTTGCCTGAAGA
TACCTTCTGTGCTGCAGCGCCTTACATTCCTGAGAGTGCATCTATGCAGAGAACTGCAAG
TGATAGACAGTAATGCTCAAATATCTCCACCTTTCACTTCTTTGGTAGCTCAGAATTGAT
TTCACTTGGAAGTGCATTGCAACTAAAGAATGTGAAATGGAGTGTTTACAATCCAATCGG
TCCAACAGTGTCTTGCATGCTCGTACCAAGCTTCTGTCCTTTGCGCCAAATGTTGAAAGA
CTTGTCATATCCTTGGCTAATGAGGTATATTCTGAAATTTTAGATGGGTATAAACTAGCT
GTTTGCATATAGCAGTTGTCGTGCCTGGTCATCATATAACTAATCTTAGGTGTATTTATG
CAGATGATCAGCACACCATTGCGACCTAGCAAATTCTGCCGCCTCAAGTACTTGCATATT
TCTCTGATTGGAGATGAAGCTATTTCACCAGATTATGATTACCTTTCTCTGGTTTCATTT
CTTGAAGCTTCTCCTTGCCTGGAGACTTTCATCTTTGAAGTAAGTTACGTTTCATCTTGC
AATCATACCTAGTGTAGGTACAGCAGCCTGAGATGAAGCATGATTCAGTTATCGGGGATT
CCTCATGCCTGAGGCCTTGTTCGGTTAAACCTCTCTCGGAGAGGATTGAAGAGGTTTGGA
GGGCATCGAGGAGGAATTTAACTTGTAGGATTTAATCCTCTCCAATCTACTCCAATCCCC
TTCAAACCCCTTGCAACCGAACAAGCCCTGAAGCGGCTACCGCAACACCACCACAACAGC
CTAAGCAACAGCCTATAAGGAGCGTGACGATCGTCGGCTTCTGCTCCGCGAAGAGCTTTG
TTGAGCTAACATGCCACATTGTGGAGAACGCGCCATCGCTGGAGCGCCTCGCTTTGGACA
CCACTCATGTCTGTCACAGTTCTGGAGGATGTACTATACGGGGAGTGGTATCCGCACTTG
GGCCCCAGCTGACAGAGGCATCCCTATGGGGAGGGATATCTTCATGGAGGCTCCCAGGGC
GCTTTTGGCTATCAGAACACACGTCCAGGGGAAGGTTCCCTCCAGAGTCGTGGTAAAAGT
CGTGGAGCCCTGCAATCGGTGCCATCTGTTGAAGATTTAGACGCCTAATTAGCAACTGTG
CAATGCTGAATCATGCCAAAGTGTATTTTTTATGATGCGTTGTGTGAAATTTGACAGCCG
TAGTTAGTTTCTTAATTTACCACAACACAAGTGCCCAATGTTTTATGATGTAAAATTGTG
TTAATGTTTTATGTAGACAGATAAAGTGGGAAAAATATACAGGTGCTGGATGTTATGCAG
GATTTTGTTCATTCCATGTTGGAAAATGAACAGGAAATGAACAATATTAGAAGAGGCCAG
CGTGTTTTACCGATGGATGTTTTACCAATTGTTCTCGTACGATTGTGAGGTGGATTCCCT
AGCTGCTTATGGAAAAGATTAGGTCCCGGTAAGTTGGAGCATCATATTCGTTTGTGAACT
GTGAGCACTGCCGCCTCCACAGCTTTAGTGCCTCCATCTCTTTCATCTTCCTCCTCCAGG
CTAAACTAAATCAAATTTTAGCCAACCACCATCCCTACAAAACTCATATCATCTTGAACT
TGAAGTAACCAAAATTGTTGTACTCAGTTCTCAGAAGCTCATGTGCAAGCCTGCAAGGTA
AGCAACACAAGAACCGCGGAGCATTGTTCACATCGATATCTCAAGTACAAGAAGGATTTC
AAGCAACAATACCAATACCAGTCGTCAATCTCTCAAAACACATGTTCTGAAACAAACTAA
TACAGTAGAAACTGAACAAAGACATTTTCTGAAACAAACTAATACAGTACAAACAGAACA
AACACATGTTGTCATGCCCAACCATAACTGGTGTCAAAACAGAAACTAATTGGTTACATT
TCTTTTTGTTTTATTATAGCTTCGAGAATCCCAACATGTGAGTGACACAAACTTGCAGAG
GTTTAAAAAGCATTATCCGTGACAACGGAAACAAAATTCAACGAACAAAGTTCATTAACA
AAAAAAATCTGATGATGCAGCTTAAGGCTAAGGAGAATCTATGGCTCCCCTGCAAACAGC
GGTGCCCTACTTGTCTTGATTCTCCTCCGACGCTTCCTGCTCGTACCGGCGTTTGAACTT
GGCAATCTGGCCCAGGCTTTGGGCCATCTGGCGCTTCGCCCTCATGTGGTACACCTTACC
GGTGTGGTTCACCTTGGTCATCATGATGTTGATCAGCCGGCCGCTCTGCGTCACGTACGA
GATCCACTGCATCTGGGGATGAAGTCCCTTCCTCATCCTTCCAACCTGGAATCATTCGCA
AGGTTGTCAGACAACAGGGGTGAATAGCAATACATATCTATTACTATCAAGTTTCCAGAT
GTTAACGGCGGAAGAAACGTCCATTTCCTCAACAGACACGCATAAGTTACAAAATCATGA
GCAGCATTCACCTCTCAAAAATACTACTTACAAAATCACGATCAACATTCACCATGATTT
CCC