Contig Data
morexGenes
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Map Locations of contig_171451 (1920 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_171451

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_25808 1 1576 bp MLOC_25808.1 Available Available LOC_Os01g52190.1, FRAME:+2, EVALUE:4e-28, 13101.m05459 protein aspartic proteinase nepenthesin precursor, putative





CDS Structure of MLOC_25808






Contig Sequence (1920 bp)

>contig_171451 1920 assembly3_WGSMorex_rbca.fasta
ATGCATATCCATACTCCAGAGATGGACTAATTAATATGAAGTAATAAATGCATTAATGGC
TGAAGTACACAATTCAGATTCACATCAGATACTCGCCAGTGCAATTAAGCCATGTATGTA
TGTCTTCTTACACTAATTAGAGACTATTTAAGACACGGCCTCCAAACGAAGGAGGCATTC
GAAATCTGTCTTTCTCGTCCTGGTTGCTCATCGATCATAGCAACCATGTCTATTTTATAT
GCCTATAAGCTTATCTTCCTCTTTGCTCTGCTGATTTCGGCCAGCCATGGCATCGTCGGC
AATATAGCACCACCGAGCGCCGGATTCAGTCTGCCCATCGTGTCCAACCACGACACAGCC
GGCGGGCTTGGCGCGAACCTGACGAGCATAGGTCCGCACATAGCACCCGTGGGGTGGCCC
TTGTACGGCGTCCTCGTCGGTGTGGGCTCCGGCCAAACCCGGCATTTCTACAAGCTCGGG
CTGGACCTCGTCGGCAATCTGACGTGGATACAGTGCCAGCCCTGCGTGCCCGAGGTTCGG
CAGGAGGGCGCCGTCTTCAAGTCTGCCGTGTCCCCTCGCTACAAGGACACGAAGGCCACG
GACCCCAAGTGTACGCCCCCCTACACCCCCTCCGTCGGGAACCGATGCAGCTTCTACACC
ACCTCCTGGAACGTCGCCGCGCACGGCTACCTCGGCAGCGACATGTTCGGCTTCGCCGGC
AGCCCCGGCACAGGAGGACACGGCACGGATGTCGACAAACTCACCTTCGGCTGCGCACAC
ACGACGGACGGGTTCGAGCGCCTCAACCACGGCGTTCTCGCCGGGGCCCTGAGCTTGAGC
AGGCACCCGACGTCGTTCTTGAGCCAGCTCACCGCGCGCAGGCTGGCCGACTCGCGGTTC
TCATACTGTCTTTTCCCCGGACAAAGCCACCCAAACGCCAGGCACGGGTTCCTCCGCTTC
GGCCGCGACATCCCGAGGCACGACCACGCGCACAGCACGTCGCTGCTCTTCACGGGACGG
GGCTCCGGCAGCATGTACTACATCGGCGTCACCAGCATCAGCTTGAACGGGAAAAGAATT
ATAGGGTTACAGCCGGCGTTCTTCAGACGGAACCCACAAACCCGTCGAGGGGGGTCCGTC
GTCGATCCGGGGACTCCGCTGACAAGGCTGGTTCGCGAGGCCTACAACATCGTCGAGGCC
GAGCTCGTGGCCTACATGCAGACGCAGGGGTCGCGCCGCGCGCCGGCGCCGGTGCAGGGG
CACCGCCTCTGCTTTGTCTCGTGGGGCCACGCGCACCTCCCGAGCATGACCATCAACATG
AACGAAGACAGGGCCAAGCTTTTCATCAAGCCGGAACTGCTGTTCCTGAAGGTGACCCAC
GAGCACCTGTGCTTCGCCGTCGTGCCGGACGAGGAGATGACGGTGCTCGGTGCGGCGCAG
CAGGTGGACACGCGGTTCACGTTTGACCTCCATGCCAATCGTCTCTACTTTGCCCAGGAG
CATTGTACTGCTGACACCCGCGCAACTGTCTAGATCCTAGAGTATATGTTTCTGCGCCGA
ATGCATTCATCATTGGTTGGTGCATGAATTGTGCGGGAACAGTTTAAGAATAACGAATAA
TTAATGGATCCTAGAATACTATAATGCTGAATTTAATTAGTATTAAGATCGGTGCATTCA
TACCCCCCTTAACCCTCTTTGGAAGCATTTCGTGGGATATTCAAGTACTCCATGAAATAT
CCGCTGTCTTTTTTCCTTTTACTACTACTAGCTAGTAGTATGGTTTATTTTTATGTAGTA
CTATTATTTCTTTCGTCAATGAATTCTTTGTTCAAGAATAATCTTCATTTTTTGGTCTGG
TTGAATTTAAGTGGATGCAATGAAAAATTGGATCGGACTACTTTTTTTATTGTTTGTTTG