Contig Data
morexGenes
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Map Locations of contig_171434 (3522 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_171434

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_25805 2 277 bp MLOC_25805.1 Available Available LOC_Os05g49200.2, FRAME:-3, EVALUE:1e-40, 13105.m05261 protein aspartic proteinase oryzasin-1 precursor, putative, expressed





CDS Structure of MLOC_25805






Contig Sequence (3522 bp)

>contig_171434 3522 assembly3_WGSMorex_rbca.fasta
GTAGCACATCACATGAATTACAAGACATCATCCATCGACTCCTCTACACATAAAGATTTC
AGGCCCAACAAGTGCACAACAAAATAGTTCTACAAGTGCACAACAAATTAGATGAGAAGC
ACAAGTTTTTATTAATCACACATAACATGAATGATACATGAAGCTTCTTGTTCCCTCCTC
CTGACCTGTCCTCTACTTCTTCTGGGTGCTTCAGATCATCCTAGTAATTCAAATAATCAA
ACATAAGAAAGCATACAAAATAATCAAATATTATAATGTACAAGTAACAAATAAATTAGA
ACTATTTCGCATGTTTGCAGGTACTAGAGGCTGGGGCGCGACCTGGTGGCGCCACCTAGG
TGGGCCTGTGCGCATTTATCTTATTTTCGCATATTCAGCTGTTACATCTAATAGCACCAA
TAACACATGATTGTTCCAGTATTTTTGCTCCTATCAGTTCTACTTTTGAAGACACATACA
CATGACTGATAGCTAACACTAGAGAATTTATCCTTGGGACTGAAGCGCAACACATGATAT
GATCATTTCCAAGAGAAGGATAGCACTTGTTCTATCAATACACAGCCCTTCATGACAGGC
AAGCATTTTGTTCTATTTGATGGCCATTCACAACTTAAAATCCCAGCATAATGAACCGGT
CAAAACTGAACATGGACACCATTACTAAGCCCTGTAGCATGCAATACAAAAGAGGGCAGC
CCTGTAGCCTATCACATAATACAGTAATATAAATGTAAAATAATATGTAGTACATGCTTC
CTAATTATATTAGGTGCTAAAGAAAGCCACCAAAAAAAGATGCAACTGCAAGAAGAACAG
CATGCGCATTAAGCGGACTAGTTTCCCAAATTCCTCATAATCATGCAATATATGAGCTGG
CCGGAGGCAGCACAAGTTTCCAAGAGACTTTAAAAGCTTCTACTTCACAAGGATTTAAGC
TTAGGGGACTTAAGGTACTTTCAAAGCTTCTTCTTCATCAGGGAAATATTTAGGATGCTG
ACAACCCAGCATGTATGCTATGGTCTGCACATATGAACTACTAAAAGCCAATGTCCTTGC
AGCTACCAATGAAAGAATTGTAATATCACTGCATGGCCGAAAGCACTGTATGCAAAATAA
CATCATTGTTCTTACATCAATTCAACTATGCGAAAGAGATGAATAAAGACAATCCTAATG
GCCAGATTGTCTTACCACACAGGTACTGCTTTGCCAACAGATATTTCCTTAAACCCAAGC
CCAAGGATACAATCGAACATTGCAACCAAGAAAGTAACACCTCGCTCCTTTGTAGCTTCA
ATGAACTCCTAATATGGTAACCAAACAAGGTATTAACAAGAAGAAAAATAACTAACGTGA
CGCACAAAATCAGAGATAATCAACAAATCAACTCAGAAATATGAAGAGACACAAACCTGA
TCTTTCACAACTAGATCACCCACTGTAACACTATCCTCGCTGAAATATCCAGCAATCGAA
CCAGTGTCGTACTGAATGGCAGCAGGCTTTCCTGTTGACATAACAGACAAAAACAACATT
GTCAGAAGATAACGGCTACCAAATAGAGAGATGAATTAATCGAAGGAAACAAAAAGGAAA
CCAATGAATATATGGAGAATCATCAATTAGTATATGACTCTGCCGAAACATAAAAAGGGT
ATAGAAAGGATTGCACATTATCATTTCCATCACTATGTCTGACAACACCAATAGGCACTA
CATCAACATCAGTTATTTTGCAGCATCCTTTTCAAGGATATTACACCTAACTTGAACTAC
AATTTCATTAGTACACATCTGACTTCCAGAGAAAATATTTTAGGAAGCTTATTTTGCAGC
ATCCTTTTCAAGGATATTACACCTAACTTGAACTACAATTTCATTAGTACACATCTGACT
TCCAGAGAAAATATTTTAGGAAGCAACCTCAGCACTTAACTCTACAAATTTGGATTAACA
GACAGGAATTTCTAAATAGTACTCAGAACTAGGCACTACCTGGATAAGCTAAGAGACTAC
CTAGAACTAACACATGGGATAAGCTATGACACATAGGAGAAACTAAGACACTACCTGGAA
CTATGCAGATTTCAAATCAAGTATGAGAATGACTGCAGTTGAAACAACTAGCATGTTATG
GTGGGAAAAAATGCATGTGAAGTGCACAAATTACAGAGGTGGGTGTGCAATACACACAAT
CTTTAACATCAAGTAAATAAAGAGGCAGGAATAGAGCATGTCAACTGTAAAGCACAACCA
CTAGTAGCATGCTGGTGAGAGAGGTTTCCACACGCTAACCATTCTTCTTGTAGGTGCTGG
ACGCCCTGGCCTTGTAGCGTGAGTGGAGGTAGCACGCAATCTGCACCAACAAAGCACCAC
ACACACACACACAAAGAAAGTCAAATCCCCCGCACCGCGGACAACCAAACCCTAATAATC
CTAATAATCCTGAAAACAAAAGTTCTTGAGGGACACGATGTCGCCCTCTTCCTCGGAGCC
GAGGGTGTTGATACCGGTGAGGAGGGGTTGCTCCTCGTTGCCAGCGTGAGACACCGGGTT
CCCATGGTCGCGATATGTGGCGAATCGGAGGGGTTAACCGAATCCAAGGCGCGGGGGCAC
GGAGCCGGGGTTGCCGGGGCTTGGGGCCTGCCACAATAAATGGGGGCATAGGGGATTGTG
TCTCGAAGGGATGGAGGCTGATAGGAGAGGTGGAGAGGGGAGCACAGGTGCCTTCCATGG
AGGAGCACCGGAGATCTGGTGAGGGGAAGGGAAGGATGGAGGCTCGCGGCGGGAGAGGCA
CGAGGGTCACGGGAGATAAGGGTGGACGGGGCTCGATCTAGGGTTAGGGTCTGGTTTGTG
GTTGAAGGGAATTTTTTACCCTGTTCGCTAAATGGGCTTGCTCAAGTCCGGGTAGATATT
AGATTTGGACAATATGGACCCATATTGTTGTCTCCAGCTATATTCTTTATTGCGAAAAAA
AGTTGTATATATTTTTTCCCTCAAAAGAAAGTTGTATTTTTATTGAATGTTGTGGGTGAT
AACACTTTTCATTTAGTTATGATATGATTTGGCATTACTAAAAAATTCACCCACATTGTT
TTCTATCACCACAAGTTGAATGGAATACATTATTGCCAATTAACGATAATAAGTAAAACC
AACACAAAGGGCTCATCATCGATGGTAGTTTTGCTTAACCAAGAAGAAACCATCATTGTA
CTCTTCGATCGGAGAACTTTTACACCTTCTCCACACTACTTATCTGAAATTTGACAAGAA
CTATGTTAAAAATGAGGCATGAGTTCATGTTTAAGTTTTTATTGTTTGAAACACCAAGTT
AAGGTACCATATAATACCTTCCATAAGAGCATGTGCTCATATATTTCATTGTTGTAATTA
TATTGTACTTTGTAAAATATTTAGGATATTAAAATGAATCATTATAATTTATTGGTATTT
ATCTAATATTATTTAGGCCATCCATATATGTAAAAACAAAGT