morexGenes - Barley RNA-seq Database

Contig contig_171322

Source Contig contig_171322

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_171322 (2223 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_171322

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_25784	1	771 bp	AK360770	Available	Available	None

CDS Structure of MLOC_25784

Contig Sequence (2223 bp)

>contig_171322 2223 assembly3_WGSMorex_rbca.fasta
GTTATTACGGTACTTGTAACGATATCCATTCTTACGACACGACGAGATGCACTTCTATCC
CTGACGAGGCTCTCGTGNNNAATTGAGGATAGGGTCGCATCTTGAACGTGACACCCTAAT
ACCACTATCAGGGCCGGGCCGACCAAATTAGGGGCCCTGTGTTAAACTCTAAAATAGGCC
GACCAGAGGAAGAACATCTAACGAAGAGACGCACTACAGCACATGACCAAGCGTCTCCAA
ATAACGTGGTTGTCAATCAAAGGTGTTTTTTTGGTAGCATGCAAAAAAACACATCAATGT
TGTATTTGAAATATTTTTCAAAAACGCTTCAAATGATCTTTTTTATGATGATTTCATCAA
AATACCTAAAAAACTGCAATATTAGAGCAATCAGAAAAAAATATTTTTTATACTTAGGAT
TTTTTCATTATGCCGCAAATAATTAGAAAATAGCTCGAACAGAATGCCTGATATGAAGTT
AAACATCTCCAAACACCAGCAAAACGTGACGTCTTTATATACTCGTGATAGTATTTATAT
GGCTATTCCGTCAGGTGTTTGATAGTGCTGATTATTGAGATGGTTGCTATTCCTTTTCAC
TAGCACGAGGTCGGACCATCAGCCGGGCGCACGTGTAATCAGTGTTGCCGTAATACGTGG
TTGATCCTTCTTTAGCCCTGAACAGTCAGGCCAGTTGCACTGAACTAGCCTATGTGTCGT
GCACTCAACTGATAAACTGCTATAAAAAATTTGAGGCCCTAAAAATAAGAGGTCCTGTGC
GGCCGGCACTATTGCACATGTGGTTGGTCCAGCCCACTATTGAGCCATTATAAAGAGAAA
TAATAATTTTCATAATTTTTTGAATAACTATACTGGTAGTTTAGTACCACACATAGGTCA
GATCAACGTATGCATGTGGCATGGTAGTTGTGTGAGTACAACAATTGCTCCTGATTTCCT
GCCTGCGAGGCTCCGAAGTGCTTTTGATTAGCTCGGGCAAGAAACAAAAACCGATCGAAT
CCATAGTGATAAGCTTGTTGTCGATGCTTTCCTACTTTTCTGTTTGGCGTTTCATGCAAG
AAGCCCTCCACGTCCGCCTACTCGCTGCGTTGCTCCACGTAGAGGCTAATTCATTTCACG
GCCGGGAGCCGCTCGCGACGTGGGCACCGTCGCGGCCACCGCGGCCACCTCGTCAGGGGT
TGGCTTTCGCGGAGCACGGCCTATAAATTGTGCACACGCGCTCTGAGTAATACACCAGTA
AACACTCGGCGACACACAATACAACAAACAGCAAGTAGCAATCATCTAGTTGCAGCATCT
GTAGCTTCCTTTTCTTCTTCGTCTACCTTCCGCGGCTAGCTGATTAATAGCAACCATGAT
GACCACGAGCTCCTTCGCCGGTGCCGCCGTCCTGCCGCGTGGCTCGGCCGGTCACTTCGG
TGTCCAGTCTATGCCTGCGCTGGCCCGTCGCGCCCTCGTCGTCAGGGCACAAACCGAAGG
CCCGAGCTCACCACAGCCAAGCAAACCCAAGGCGAGCACCTCGATCTGGGACGCGCTGGC
GTTCGCCGGCCCAGCGCCGGAGCGCATCAACGGGCGCCTTGCCATGGTAGGCTTCGTGAC
GGCGCTGGCGGTGGAGGCAGGGCGCGGCGACGGGCTCCTCTCGCAGCTCGGCAGCGGCAC
CGGGCAGGCGTGGTTCGCCTACACCGTGGCGGTGCTGTCCATGGCGTCGCTGGTGCCGCT
GCTCCAGGGCGAGAGCGCCGAGGGCAGCGCCGGCACCATCATGAACGCCAACGCGGCGCT
CTGGAACGGCCGCTTCGCCATGCTCGGTCTCGTCGCGCTCGCCGCCACCGAGATCATCAC
CGGCGCGCCATTCATCAACGTGTAAAACTAGCTCTGTCGTCGACCGGATAACACAACGTG
TACTTAGCTAGTAGGACATGTAAATGATGCAGAGGAACACCAAGATATTTAATAGGAAAG
TTATCAAGTTTACAATAGAAAATCTGTGCAAACTCCTTAGTTGGATCTTGTTCCACGTTA
ATGGTCATAAAATTACTCTTGTGAAAATTGATCTTTAGCTCCGAAAGGTTTTCAAAACAA
GACAACACCATTTAAAATGTCTAGCCTTTTTAACAGAATTCTCTAAAAAGAGAATGGTAT
CATCAACATACTGCAAGCTGATTATGTTAGATTAATGTCTCACCGCGTGGGCCCAACGGC
CCA