morexGenes - Barley RNA-seq Database

Contig contig_171296

Source Contig contig_171296

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_171296 (2648 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_171296

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_25780	6	2308 bp	AK375235	Available	Available	None

CDS Structure of MLOC_25780

Contig Sequence (2648 bp)

>contig_171296 2648 assembly3_WGSMorex_rbca.fasta
CGAAGCGGGGGTAAGTCGCATCTCGACGTCCACGGACCAATCCCTCCATTATCTGGACAT
CCCGCTGCTGTGCGCTTGCTATGCTGCCCACGTGCCCTTACGCGCGCCTCTTCTCCCGAT
CCCCAAATCATCCAATCCTCTTTTTCCAGCAGGAGGCGTCGCGTCTGAGCAGCCGACGGC
CAGCGGAGGAGGAGGGGGTCCATAAGGCGGCGGCGCGGTAACTGGTCCGGCGAGCGGCGA
ACGGACGAAGGCGGCCGGAAGAGGGTGAGGCGGCGGAGCGATGTCGAAGCGGCTGATGGA
GCGGATGCTGGGGATGTTCCGGTCCCGGACGCAGGTGGGCGTCGACAGGGCCGGCAACCA
CTACTTCTCCCGCGTCGAGGAGGTCGACGGCGCCAGTACGTGCCCCCGCGTCCGTCTCTC
CCCGCGCACTCCTGTCGCCCATGCGTTCCCCTTCTCCCCCCCTGCAACAAGAACCTGTGC
TCTCCTCTATGAGAATGGTCCTGACATAACCGTGTTTGTGCTTCGTGATGCATTACGCAG
TGAAGGAGAAGCGGTGGGTGGAGTTCAAGGGCGACCGGGACCCGACCACTGTTCCAGGTT
ACGCCTCCTATCGCTTGTTAGGCCTGTGAGAATCTCTAGTTCTCCCATTTGGCTGGTACC
AACAAATGTTTTTGCAGGCATGTATGGTTTATGGCCTTCATTCTGAGCCAGTATATTCGG
ATTTGTCAGTGAGTAGACGTCATCTGATAGTTGCGTCGTGCTTGTAGTTGAGTGGATTTG
CTGGTTGAATGGACAAAGGAAGAAAGCTCCAACACCAGAGGTAAGGAGTTACACCATGCC
AATCCACATGGTTTTCTGAAAATTATTCATTGATGAAGCAGCGTGTTCATTGAATCTGAT
ACTGATGTTATGTATTACTACACTGACACAGGAATTAGCTGAACTGGAGGCGAGGCGTGT
ACGTGTGAAGCAAAATGTTGAGCGTATGTATCTGCTGATTCCAACTTCTAACCTCTCTTT
TGCTTTTGTTCTTGAACTTGCTACACACTATGTGTATTGCTCATTAAAAATGTTACTGCA
TAAGTTAGAGCAATAGATCTCAACATGTTTTTCTAAGCGTGTCATGGAGCAGCGCACATG
TCTATTACTTTTGATTTTTATACTCTGCATCAATTGTTCATTTATCTAATGTCAGCGTTG
CAATATGTGGATATGCTGCAAAAAAGCACAGCAAATGTGTGTGTTAGAGTGAATTGAAGA
TGTTTGATGATTGCGTGAAATGCTAGGGTATTTGAGTATGCGGTATGCCTCTCATGAGTA
ATGCCTATTGTTTGTTCTTTGTTGGGGTCACACTCATAGGAATGGATTGTTGTTGTAGTC
TGCCTTGTGGTTATTACTATATATGTTTTATGGTAATCCCATTACTCAGTAGATAGTAAA
ATGGTAGAATGATGGTCATGATCAGAGATGCGTATTATATCCTCTTTGATGGTAACCTTT
TTCCTCTTGTGGTTGTTAAATGGAAACTGTATAACATTTTTGGGGCCAAGAGTCTATTAC
AACTGAGGAAATGAGGGATGAAGCAAAATCACTTGATTTTTTTGTATCGCCACAAGCACT
CCACCAGTTAGCTGGAATGCCAATGCAACATTTCAGTTTCGTCGATGTTGCATTGACTGC
AAACAGGAATAATATGCACGTGAAACCTAGTTTATTATTGTTATGGACCAACTTCAGTTA
GGCCAGCTTCATTTTGTTATGTCCTTGATATTTGCATAAAGACTACCTCCTCACGAATAC
ACGATAGTGCGAACACCTGTAGAAATTGGGGATCAGGGGAAAATAGCAGAAACGAAGATG
GAGATTGGGGATAAACCATACGACCAGTTTTATTCTATAAGTTTCCCGTTATTCATATTA
ACGACACTCCTACCACACAACCAGCCCCCCTTCAGTACCTTGAGAGACTCACTCCAGGTC
CCCAACCCAAGTATACATTCATGGCCCCTGATCCTGATGGCTTCTTCCTTATCCCCACCT
TATCTTTCTTGCTTTTTTTACACGCTGTCAGTTGGGTGTATGTCACTCCAGGTGTGAAAC
ATATCTGTAGATTCATCCAGTTATATAGAAAACATGTTGGAGTGATGATCAACTGGTATG
TAATCTGACTTCCTGTTTGTGTTTTTAAAAACTGTTTACAAATGTATGCTTACGTACCAT
TTTCTGCCCATTGAAGCTTTTATCTAGTTGCACTGCAATAGAAGATCTTATTCATAGGTT
TTGTCTCATCAAGGTTCTCTTATATATTGTATAATTCTACATGTGTGTCGCTTCACTGAT
ACATTTAATCTATGTTCAATCAAGTTCTTAAAAAGAAAGAAGAAGAGGAAAGAAGGGCTG
GTGTCCGACCAGTCAAGACAATCGGTATGTTCTTTATGTTACTCTGTTGTTTCCATTATT
TTCTATTGGCAGTTGTATATCACTTTGGAGTTCCTTCTATTGACTGTTTAGTATGCGACA
GTTCTGATTACTATACCTCCTGTTCCACCAAAACCATTCAGACTTACGCTGTGGTTATTT
GCACTGCCTACTTTCCAGCCGTGTCTCTCAAAAACTACTCCCTCCATTCACAAGTATAAG
ATGTTGTA