Map Locations of contig_170631 (7843 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_170631

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_25676 4 2269 bp AK375835 Available Available None





CDS Structure of MLOC_25676






Contig Sequence (7843 bp)

>contig_170631 7843 assembly3_WGSMorex_rbca.fasta
GGGGCCGCCCCGCGGCGCGGTCCCCCCCGCCCAGACGCGGAGCCCGGGGGCCCCGGCCGC
GCCGGGCCCCTGCCCCCCCTGCTCCTCCCCCTCCCATCCCGCCATCAGATCTGGGCGGGC
GCGCCGCCACCAGCCCCACAACCGAGAAACCACCACCCCACGCACCCATGAAGGCGCGAG
GGACCTCCAGGAGTAGCAGGGGGAGCCACCGGCGACCACCAGGGCAGCCGCCGACTGGAT
CCGTGCCCATCGGATCCAAATTGGACCACCACCACCGCGACGGGCGGCACTACCTACAGC
CCACCGCGTCGGGCCACGCGTCCGCAACATCGCTGCCAGACGCCAGCCACCATGTCGGCG
CCCCTGCACCGGTGCGCCACCGTCACCAAACACCCCCACCCGCGCCGTCGTCTTCGAGGG
GGGAGTGAGGAGCCCCGCCGCTGCTGACGCCGACCAGGCTTAGCCCGGCGGCGCGCACCA
ACGGCGGCAAAGGGAGGGGGAGAAGAGGGAGAGCCCGACCCAGCAGCGCTAGGAGCAACG
CGGAACGGGAGGGGGGAAGAGCAACCTCCATTTCCCCGAACCCCGGTGGCTTCGCCGTGC
AGGAGTACCTCGTCAACACCTATGGCCTCACCCGCCCCCAAGTCCTCAAGGCCTCCAAGA
AGCTCTCCCACCTCAAGTCCCCCGTCAAGCCACACGCTGTCCTCGCCTTCCTCTCCGGCC
TCGGCCTCTCCGACGTCGACGTTGTCGCTGTCGTCGCCAAAGACCCGCAGTTCCTCTCGA
CCGTCGTGGGCAAAACCCTAGCCCCCGTCGTCGCCGGGCTCACCGGCCTAGGTCTCTCGC
GTCATGAGATCACTCGCCTCGTCTCGCTTGCTCGCTGCGACTGCCGGGTGACTGAACTCT
GCCCTATCCACATGTGACGCTCGCTTGTTTGCTTCCCTGCCTCGCTCACTGCTACCTATT
TTCCTCTGGTTTCGCGTGGGTGCACACACGCTTGCACATGATATGTTTCTTGCGTAGGAA
GTGATTATTTATTCCTCCTTTATTCATGCTTTCGCTAGCTTTTCTACATAAAAAAAAATC
ATGTTTGCAAATGTCCTTATTCCTTCTTTATATATCCGTAAACAACAAACTCCTCCCTTC
GGTGCCACGTTTTTTCTTCATTTTCGGTCCTGGCATTTTCAAACTACACGTCTTGGGATG
TCTATTTTTTTCTTTATTCACGGACCAGTGGGCCCTGCTTGGCAGAGGTAGGAAATGGAG
GCCCAATGGATTTATTTTATTTTATTTATTAGCCGTGCGTCTGGTGTCCAACCAACACTT
CAAATTTGACGTCTCACATTCTTTGCAAACTTTTATTATTTTTCTTTATAACCGTTGAAA
TTTTCTATTCCTACTGTATACTATTGCGGGAAGTAATTGCTATAATTTTTTAACGGTTAT
ATTTTTAATGGCTATATTTTTTGACGGCTATGTTTTAAACTGACATATTTTCGACCGTCA
TTCATTTTTGCAATGGATGTTTTTTTAATTAAGGACCATATATAATACCACAAAATTACT
TGCTAATAACTACACTTGGGTCAATCATCATAGAATTAATCCATGTCAATTAGTGTAGCT
TTATCAAATAAAAAAGAAAAAACAACAACAATTCTTCTTAAATTGAATTTTGAAAAGGCC
TTTGATAGGTTTGAGCATGGAATGGTTTTGGCAATCATGAGGAAAAGGGGTTTTGGACCC
AGGTGGTACTCCTGGATTCAAAATATATATTTTTCGTTTGCTACCTCTATTGTTTTTTTT
ATAAATCATGTCTCAGGAGCCAATTACAAATACATAAGATGGGTTAGGTAAGAGGACCCT
CTCTCTTCTTTATTGTTTGTGTTGGCTACCCACAGTGGTAAATCTACTCGCGGGCTTTAA
CAGGCTCAAGCCTCCCTCCAGCCCTACAATTTTTTTACTACTAGTTTCAAGGACCAGTTG
ACCCACTTGTGAGCCTGGCCCAACACATATTTGCACAACCCAGACAATCTAGCCCTCTAT
TTTTCTCTAGATTCGCCAGTGGCTGCAGACTTCTTCCTACAAACTATCCTCAATGATGTT
ATTCACAAGGGCTAGTTTGTACCTTCCATCAAGTTTAACTCATGTCCCAACTTTCCAGTT
GTTCAATATGCAAATGACACTCAAATTGTCATGCAAGCTTGTGCCTCGCAACTGAATGAT
CTTAGAACACTTATTGATTGGTTATCTCAAGCTTCAGGCTTAAAAGTCAATTACCACAAA
TTCAATCTGATCCCTATCAATGTGTGTGATCAAGAAACCCATATGTTATCTGATATTTTG
GCTGCCAGATTGGTGACTTTCCTTCCACCTACTAAGGGGTTGCCCTAGAGATAACTGTGC
CAAAATTGAAATTACTTACATACATAATTGAGAGGAGTCAAAAGAGATTGAGTGCATGCT
CACAAATGTTAAGCTAAGATGGTAGGCTTCTCTTGGTCAATGCAGTATTGTCATCCCTAC
CAACTTTTATCATGAGCTGCTTACAATTATATAAAGAAATTATTTTTGCAAGCAGACATG
CCTCCGAATAGGCAAGGGTCTTGACAACAACAACAAAAAACATTGGTTGCCTGGGAGCTG
ATATGCAGGCCTAAGAATCAAGGTGGTCTGGGTATTTTGAATCTCCAAATACAAGATATA
CCAGTCTGATGCTTGAAATGGTTCACAAATTCCTCAATCATGATGATCTACCTACCTTGG
GTTCACCTTATATGGAAAGCTTACTATAAGCAAGGGTTATCACATGGCCAGTTGACCAAC
TACTCCTTCTGGTGGAGAGACTGCCTTAAGCTTCTGATTATTTGCAAATATTTGGCAGTT
TGCACCATCCAAAATGGTTACGGGATTCAGTTCTGGTCAGATAAAGTGGAATGGGCAACT
AAAATCTCAACTCTGGCCACATCGATCTCTTCTCTTTTGCTAAATAGCACAATATCTCTA
TATCCACAGTCTTGACAACAACAACAAAAAACAACTAACATGCAACATAGCTCCGGTGTT
AAGTCTATTCTGAAGGATTTTCTTTTGGCTCCTCCTTCAGAATAGACTTAACACCGGAGC
TATGTTGCATGTTTTCATGCGTGTGGCTAAAATTACTCATGTTTCATGCGTGCATTTGAG
ACCAGAGATCGCCTACTCTTTACCTGCCCATTTGCTAAGGTATGTTAGTCTCATCTTTGT
CATATCTGCTCTCAAGGTATGCAGGCAGAAATCATTTTAGCTGCATAGGCAATTTGGACC
ACACACAATGATCACATTTTTAGAGGGGTTACTCCAAATTTTATACCATTGCCAAAAGCA
GTTCAAAGAGGAGTTAAAATGGATTATATTCAGAGCCAAAAGAAAGAAATACTCTGCATT
TGAAGGCTCGGTCCAAGACATCAGATAGTTAGTTGCTGCTTGCTCCATTATTCCCTTGTA
ATTATTTCTGTACAGTTTGTTTTCCTTTCTTTTTCTTCCATTCTTTTATTTATTGAACAC
TACTTTCTATTATTTATTTGAAAATCCATAAAAATGCACAGCAGAGTCCTACAGTTTCCC
TAAGAAAAAAAAAGTTTAGGTGCATATTGTTGTTGTCACAGAAAAAGCGAAAATCTGTTG
GTCCTCAGCAGAAATTTTCCTTCGAAATTGCGTGCAAAGTACAACATATAAAAAAGATCC
ATACGATTTCCAATTTTGCAAACCAGAAAGGTAAACAGATCCTCCTTTGAAATACCATCG
ACTTATAGAGAAGAAAAAACTTGAATTGTAATGCCACCTCTTACCAGTGAGCCGTACAAA
ATTCAAAGGATGAATGATTCCTGAGAAAGCACGATTGTAGGACGGTGTTCTTCTCCATCC
AAAGTATGAATTTCATTTCAACTCAGCACAATTATTAGGAGGATGTTATGCAATGCATCA
CGATTGTAGGACGCTGTTCTTCTCCATCCAAAGTATGAATTTGATTCCAACTCAGCACAA
TTATTAGGAGGATGTTATGCAACGCATCAATGTTTTGAGAGGGCTGAGCAATCTCATCAG
GTCAACTTTGTTTGCGAGAAGAAAAGAAACCCATGAATAAATCAGTGAAGACCACCCAAG
AAACACATATACTTACACTAGATCAGAGGAGGGGGGGAACCGACACATTGGTGAGACCAA
GGATTATGTATACACACACACACACCAACCAACCAACCAGCCAGCCAACCAATGTGTCAA
AAAAAGAATTTGAACAATCATCATCATCACATCATAGTCCGGGTTATATATGTTGTCATG
CTGCAAGAGAAGGCTTTCATCTTCTGTCTTCCTTTCCTCGTATATTCTACCATCTAGTTA
CATGATGAAGTAAGCTCGGATCACCTCAATAATGGGTGCGCGGCACAGCGGACACTTCCC
TCCGCTTCGAACCAACTCGTTCGCGCATTTCGAGCACGTGCACATGTGCCCACATCTGCG
CCACCCACGAAAAATCATGCTCAGCACTACTGAACAATTAGCAATCATATGTTTCAACAC
AACAGCTTTCATCCAAATAATAATGGATAGAAAACCAACCTGTACAGAAGAGAGTCGATC
GGAGTATCACAGCATACACAGCAAGTGCCTTTCCTCACATTCATCCACTTCGACCCATCG
TCAATAGTTTCTTTGGTTTCCCCTGAGACAACAAATACATCATTCGATGTACAATCATCT
TACAAGTACGAGAAAATGTACAGGGCAAAGAACCAACCAACATCATGACTTAAATGCTAC
ACCAAGGTTAAATTTAGCAATAAAAGGTGTTATTAATGGATAACTACGAGCATTTCTTGA
AGGTGAGAAGAGCAGACCCAGCATGCCCAGGCTATGTCTTCCTTTCTAAATTAGAGGAAC
CACCACAGAGTTAATGTGAGAAACAGTAGCTACTGACCTCGCTCGCCGATGAAGCGATTC
AAGGCTGCGGAAACTTCCTGCCTAACAGAACGCTGTAACTCAAGCTGCATATCCATGCAG
GCTTCCAACATCCTTTGCATATGACCCATACCTTGCTGAAGTCTTGCCATATCAGCCCTT
AAATCATTAATAGCTTCCCATTCCTGGAGAAGCAAACCAGAAGAAACAAGAGCTTTATAG
CAAACAAAAAGACATGGAAAATTACCCCATTAAAACTTACAAAGAAGGGAAGTTATTGTA
AATCCAATTATCTAGAACAAAATAGTCCAAATTAATGCAAACAAGAACCTAGCAGTGCCC
GGTTGGCTAGAGCACATGCCTGTGTGCTTGCCCACCCACGTTCGAGGCGCAGCCTCCGAA
TGTGCTTCATTTTTTACCTAAACATCTATTCATCCATTTCGACCCATCGTCAACAGTTAA
GGTAGGGAACTTCCCCCTTTAACCATTTTTTTAAGCCAACAAATTAAGAAGTCCAAATTA
ATACAATCAAGAACCGAGCAGAGCCAGGTTGGCTAGAGTGCAGGCTTGTGAGCTCGCCCA
CCCACGTACGAGGTACAACCTCCACAGGTGCCTTACTTCTACCAAATACGTTTAACCTTG
CCGAGGGAACATCACCCTTTAACCACGTTTTTTATATGGAAACAAATTAAGAAGTGCATA
AAGCTGTGTGCAGTAATAAGAATGTCAAAGAGAATAGCTCACAATATCCGAACGGTTTAT
GTTCTGTCTCATCCAGTTGTTATGATGCAACTCCGAATGCCAAAGTGGTTGACGAGGAGG
CAAAGGTGGAGGTGGAATCACTAAACGAGGCCTAACATTAGCATCACGAAGAAGTTCCTG
TTCCTCGTCATCTTCTCTATGCTGCTCTTCTTGAGCTTGCTCCTGCGGTTCAGGGGCAGC
TGCTGCCGCAGGTGTTCCTTCCAGATTCAAAGAGAGAGGACCACGACCTTGCCGTTCAAC
GTATGACCGGATAAGTCGGTCTAGGTTTTCACGGAAAGCGCTGTCGAGGAGATTAGAAAC
GCTCCTCCTGCAGAATTATTGAACAATGTATATATCAGCATTATTTAGAGTATACACATG
CTGAATCCTAAATGGCTTTTGGTGCTAATCATGTTTCTCTTAATTAGTGCAAGAAAGAAA
GAAGGAAAGAAAAACCTGCTTAGAAGCTCCCTTAGTTCTGTGCTGTACACATTATCATCA
TCACCAGGGGTAAATGTATTAGCTCGTCTGATGAGCGTAGACTCCTGGTCAACCGGTTGC
TCTGAATGATCGTCATGCCAGTTATGCGCACTCCCATTGGACTCATCGTCGTCGTGCCAC
ACTTCATTTATTTCTGGAAAATGATCGTCACTGTGCCACTCATCACGCACTTCTGTGGGG
TCATTACCCTCCCCGTTCCACTCTCCACGCGCTTCTTGGAGATGATTATTGTCTTGAAGC
GCTTCGGGGAGATGGTTACTGTCAAGCTGCTCTTCATGTGCTTCAGGAAGATTATTATCA
CTAATTGTTGACTCGTCGCTTGTTTCCAGAAGATACGACACCTCTTGATGATCTCCAGCC
TCCATTGTCCTCTCATCAGACGATGATGAACTGCTGTCTGCATTTTCAAGCCAATTTCTT
TCGGATCCCTCTCCAGTAGTAGTAATAGCATGGGAAAACTGATCCCAGTCTCTTCTTCTA
TCCACCACTTCCAGATCTTCCTGCCAACCCTCCTCCTGACTATGAGGTTCGGACAATCCT
TCAGCAATACTAGGAGCATTGCTTCCATAATCTGATGCCGTTGCTGTATCTCCAATCCGG
TGAAGATCAACATTATCGTTTGCCTGTTGTTGACGTGTGCCCTGAGCGTCTTCGGAAGCA
GTATGGCTTGATTCAGAATGGTCATTGGTGGAGAGGTCAACAGTTTGAGCTGAAGATGAA
TCCGACCGGCTAGCTGCTTGACCTCGCATGAGATTCTCCAATCTGAAGTGAAACCCGTCT
CACACATAAGATTAGTACATTACAGCCTTTCACTTGATCAGATAAAGAAAAATAATACTT
ATTACACACTATATTCAGATTGCATCTTCAGGTAACCATTCATTTCAGCATGAAGCAGGA
CAAAAATAATTTTTGTGCGTTTAGCGAGTAAATGCCTGCTTAACATCATCGATTGCTCCG
TTATTGAAAGCTTATCATTCATTTGGATTTGGGCATCATATAAGCATCATTACTCGAGCC
ATCATATGTTGATTGAGACAAATATCAGCAAAATGGGGTGCAAAGGATCAAACTGTAGCG
ATATCAGCATCAGTACAACTAACCACTAAGAATCATGCATGGCATGGGCACTCCATACAC
AAGATGGACCTCCTCCAACCAAAGCAACAGAATGTTCCGACAATGACCCATTACTCCAAT
AATTTCGCTTGCATAAATCCATTCCAGGAAAAATAAATGGAATGCTATTATCCACCAAGC
ATTAGCAGCAGCAGCAGCAGCAGCAGGAATGGATAAAGAAGCGAGCTTGCTGCGTGCGTA
CACACCTCAGGCCCGAGACTGGGTGGCGCTGCCGCAGCTGCCCGAGCTCCCTGGCGGCCA
CCGACGGCTGCCTCCTCTCCTCCTCCGGCAATCCGCCGTTCCGCAGAAACCTTCCCCGGA
GCAGCGCCTATGGTTAGAAGAAAAAAAAAAAGAAATGAGCAATCGTGCTACAGCTAATGG
AACAGTGGCCGGCGGCTTGCCGGTGGCGCGGCGACGCACGTGGATTCGGTTGCGGTGGGG
GAAGCCGGAGACGGCCCGGCGGAGGGAGAGGCGCTGGAGCTCGGCGTGGCGGTCGGCGGC
GAGGCGCATGACGAGCTCCAGCCTCGCCTGGCGGCCACGGATC