morexGenes - Barley RNA-seq Database

Contig contig_1689119

Source Contig contig_1689119

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1689119 (1534 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1689119

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_25400	1	362 bp	MLOC_25400.1	Available	Available	LOC_Os01g68810.1, FRAME:+1, EVALUE:4e-43, 13101.m07501 protein expressed protein

CDS Structure of MLOC_25400

Contig Sequence (1534 bp)

>contig_1689119 1534 assembly3_WGSMorex_rbca.fasta
CAAATACCATGATAGTTTGAAAACAGTATCGTGTAAAGTGGTTTATGCAAATACCGTGAT
AGTTCTTGTTGGAACCACTACATGAAAAGAGGACTAATAACAAGTTGCCACATCAAAACT
GCAACTCGAGTCACAAACATATAAGAGTTGTATTTTTGATTGTCATCTTGTAGTTTTAGG
CTTTGAAGGGGTGTCGTATTTCCAGTACCTCTATGTAGAAGAACATCTCTTTCACCAGTA
GAGATACACTGATTGAGCTCTTCCACTGGTTGCAGTAACCATGTTTTTAGTTACTCGATG
CATTTCAAGTTATGCATGCAGATTTGGTCTTAGTTCATGAAATGCCTGCATTGATCTTCA
ATACACTTGAATAATTATTATGGACACATTAGAGATTCAACTTATGGAGTTTACTCATCT
CTTTCTTGATGCCAGGCTACTAAAATAGGCAAAATAAATCTTGCTGCTACTGGAAAGGAC
CTTATGGATGACGAGAAGCAAGAAATAACGATCGATTTATACACAACATTGGAGATGGAA
AATGGTATAATTGATGAGCGAGCCTCTGAGATAGAAAAGAACCAGAAGCTTGGACTTCTT
CTTTGTTTCCTCTGAGTCCATGATTGGTATTATCTCGAGTGCCATTGATTCGAGATGTAT
TATAATATTTTAAAGTTTCTGCCAATAACATTTTATTGTTATGCTTAGTATATTTCGAAT
CTGTAGTAAAACACATCTGTCTTTTTGATATGTTATTAAATGTCACTGACTGACTTCTGC
TGTTAGTTGTGAGGGACCATGCGTAGCTACTATTTCAACGTCTTGTGCAGCTAAATCCTG
TCGAGCACATTGAAATTTATGATGCTTTATTTAGGTTTGTCAACTTCCTCTGCATATTCT
GCTAGCAGCCTCCGCAGTTGTATACTATTGCCACTACTTCCGCAAAATATGGTTTTTATG
GCATGCCCGAGTATGTTTATCCTAATGGAATGGTTGAGCACCCCAATTTATCTTGTTCAA
TTCTACTTCCAATTGTACAGAATTATTGAGACGATTATTGAGGGACAATGCCAAGGATGC
AAAGGAGCAACCAGTAGTAAATCTATTCTGTAGTAATGCTTGCATGCAGTACAATTTAAT
TTGATCACTCGTATTTATTCAGTGTGCTATCTAGTGTATGCCAAGGAACTCAAATAGTGT
GTTGTATTTATATATTCCTGATGCTCATCTGATCTGAGCTTGCTAAGGGCAAGGATAAAG
CCACAAGGGAGCTTCAAACTTCCACTACTCATCTAATCAAGATTTAAAACATTAGGTACG
TATCTTTTACATCACCATCCCACTCACCATGATTTCCATAAATAAATTGTTCCTGCATTT
ACTCAAAAAATATTGGAAATGCATTACATCAATTTTAGACACCTGTGGGTGGGCATTATT
ACACATAAAACCATCTAGTATTCTAGCCTTATGCTTTTGTGCCCATGTTGATGCCTAGTG
AAGTTATTTTTGTGCCCCAAATAACTGTTTCTTG