Contig Data
morexGenes
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Map Locations of contig_168552 (2508 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_168552

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_25346 1 1173 bp MLOC_25346.1 Available Available LOC_Os01g24600.1, FRAME:+1, EVALUE:6e-167, 13101.m02600 protein fruit bromelain precursor, putative, expressed





CDS Structure of MLOC_25346






Contig Sequence (2508 bp)

>contig_168552 2508 assembly3_WGSMorex_rbca.fasta
TCCGAGATGAGGGCCAGGTGGTCCAGGTGGATGACCAAGTACTCGAAGCGCTACTCTGGC
CCCGAGGAGAGGGAGAAACGGTTCCAGATCTTCAGCCAGAACGTCAACTCCATCGGCGCT
TTCGCCAGCCAGACAACGGTTAACGCTGTTGTCGGCGGATTCGGGCCCCAGACCATCACC
ACGGTCACCGTCGGCATGAACAGGTTCGGCGACCTCAACCCCAGCGAGGTCGTCGCGCAG
TTCACAGGTTCCAACAACACCGGCTTCATCCCGGAAGCTCCAACCTACCTCCCCAACGAT
GACTCACGGAAGCCATGCTGCGTCGACTGGCGCTCCCAGGGTGCCGTCACCGGCGTCAAG
TTTCAGGGCACTTGCTGTAAGTCATGCACGCTATATGTTCTTTGTACACAAATGTTGATC
ACTCCATTCTTTTAGCTGAGTATAATGGACACGTACATGTGGTACATGGTGGCAGTGTCT
TGCTGGGCGTTTGCGGCGGTGGCGGCCATCGAGGGCATGAACAAGATCAGGACCGGTGAG
CTGGTGTCGCTCTCGGAGCAGCAGCTCGTGGACTGCGACACCCGCAGCAGCGGGTGCAGC
GGTGGCCGGTCCGACACCGCGATGGGCCTCGTGGCCTCCCGCGGCGGCATCACGTCAGAG
GAGAGGTACCCCTACAGCGGCTATTCCGGCAGCTGCGAGGTGGACAAGCTGCTGTTCGAC
CACCAGGCGTCCGTCACAGGGTTCAAGTCCGTGCCGCCCAACGATGAGCGGCAGCTGGCA
CTGGCCGTGGCGCAGCAGCCTGTGACGGTGTACATCGACGCAAGCGCATGGGATTTTCAG
TTCTACTCCGGCGGCATCTACAGTGGCCCCTGCTCCGTCGAGGCCAATAGGGTGAACCAC
GCCGTCACCATCGTCGGCTACTGCGAGCAGTTCGGTCAAAAGTTTTGGATTGCCAAGAAC
TCGTGGAGCAACGACTGGGGCGTCCAGGGATACATCTACCTCGCCAAGGACGTCTACTGG
CCCACGGGCACCTGCGGCCTCGCCACCTCGCCCTTCTACCCAACAGCTTGATGTTCCACA
CCCACCGCCATGCCTACGCACGTAGGGCTTTTGCGCGCAATATTCGCTTATGTTAACTGC
ATCGTTCGGATGGACAGACGGTTAAGAGTGGTCGATGGATGTGTGTGTAGTAGTATATAT
TGTTTCCTTGTGGTTGTAATCATGCAAAAATAAATGTACTTGATCAATAGTATGATGGCT
TGAGTGTACTTGATAAAATATAAACTTGCTTCGACAAACCTATCACATTTCCACATGACA
TCATCTCATGTTAGAAACAATCAAACATGGTGCGAATACCTATATTTTTATGAACGGACT
GAATGTCAACTTCTTGATGAATTGAAAGCTTCAACGTACGTGTATACTCAAACTGAATGA
AATGCTATTAGATAGACAAAAGAAGGTAAGTGAATTTTCAACCGAATGACGATGGACTCC
TCCCCTACCGAGGTTTCTGTTGCGTCCACTCCTCCTCCCAAGGCGCTCCCCTCCTAATCA
TCCTCCTCCAGGGAGTTCCTCGTCCTCCATGACGGATGATGACCGAGGTGCGCGTGCTGT
AGATGGTACTCCGGGTATAGACCTTGAGTTGGAGACCTATTGCTACATGCACGGGTTCTT
TGCGGTGGAGCTGAAATCCACGCCACTGAGCTCCAATAGGCGTCGAGGCGGCAGAAAATG
AGGGCTCGCTCGAGTAGAGAATAGGTGGAGCATTGATCTGAGACGGCTCACTCGAGTAGG
CCATCTGAGATGGCTGAATGTCTACAAATATTTGGGCGGGCCACAAGGTAGACATACCAC
AACTTACATCTGCCTGATGTGTTGTGGCTAGTTCCCATATGTGGGGATTTTGTAGAGGTT
TTAGTAACATCATCAAATTATCCTTTCGTAGTTTGAATATCACTTCGAGAAATGTAATGC
CCATATTGTTGTAAATTTAGCACAATACTATCATGGGGACTTCTCCAAATATAACCAATT
ATCTAGCTCCATCTAAATGACAACCATGTTCGAATGATCTCGTATTGTTGTTAACCGAGA
GAAAATATAGGGAGACAAAGGGTGTGATGGCGTACATTTCGAGGCTCCCCTCCCTTCCCT
GTCGTTCCCGCGAGTGAAGCGGAGGGGAAACCCTAACTTCCGGCCTCCGAGCCCCTCCAC
CCACCTTCCCCCTCACTACCGCCAAGTCGCACGGAGAGCCGAAGCCCTGTCTGTGGCGGT
GGCGACAGAGTGTCTCTTCCCCTCCTCCGATGATGGCTGGCGCGGGACAGCTGATACTCG
TGATCTACGTTGGGTTTTTCGTGAAGAGGAACGGGTAATCGTAGCTGAAAGTAGGTAAGT
ATTTTCCTTAGTTATGAAACCAAGGTTTATAGAACCAACAGGAATATCAATCCACAACCG
TCTTCAGCGGCTGCACACAAAAGAACAAATAGCTTGCGCCCAACGCGG