morexGenes - Barley RNA-seq Database

Contig contig_1674661

Source Contig contig_1674661

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1674661 (2723 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1674661

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_25162	3	1388 bp	AK252538.1	Available	Available	None

CDS Structure of MLOC_25162

Contig Sequence (2723 bp)

>contig_1674661 2723 assembly3_WGSMorex_rbca.fasta
TAACTGGGCCTCTGGTCATAACACGTTCATATATTTGCAGCTCGAGTACACTTCAGTTTA
TCCGTTTATACCTATATAATGTATTTTAATCTGATTGGAGCAGCTGCAATGGAGGACAGT
ACTATTGATTTTGGTGACTTCTTCAAGGGTCCTCTACCTGGGAAGTTTTTGAAGCTCCTT
GGGTTTTTGGCATTGTCTCGACTTGGTGTGTATATACCTTTGGGTGGAGTGAACCAGGCA
GCTTTTGCTGGTAATCTTGACCAGAACAGTCTGCTGGGCACTTTAGATTCTTTTTCTGGT
GGAGGTATTGGCCGGCTTGGAATATGCTCCCTCGGCATTGTTCCGTTCATCAATGCACAG
ATTGTGTTTCAGCTCCTTACTCAGCTTTACCCGAAATTGCAAGAGCTTCAGAAAAAAGAA
GGGGAGGCAGGTAGAAAAAAGATTCTTCAGTACACAAGATATGCATCTGTTGGTTTTGCA
ATTGCCCAGGTAGGTTAGAGTCTTGGAAATATTTGAGCATCTCTTGGATATCTTCTTTTT
GTCAAGATAATGACTAGTTAAAACTACAAGAGCAGCTGTTGGAATTTTTTGATGTCAATA
ATTGGTTCTGAAGCGTCGTACCTCAAGGTTTCCATGGTACCGAAGGGGATACCTTGTGTG
TATGACTTACTTTTGTCGGGACAGATGAAAAGCTTTGTAATGTTGTGCGATCAGTGATCA
CATGCTATATTAACTGACTATCTACTTAACAGCATACCATGTTAAACAGTTAGAATTATG
TCAAACATGCCACACAATTTGACCACATAACTTGCAATATCAAGGTAATATGACACTTCC
TTTTTTGTAACTTATACCTTCTATGTACACCGATGACTTACCTTTGGCATGGAAAAGAAA
CTCAAAATACAACAAACTTATTCCTGATGCCAAATCATGTGCTTTGCGGTCATGAACAAT
GAAAAACAATCCTAGTATTACTCATTTGAGTCCGTCCGACGCTTCTGTTGTCAGATTTTT
TTTGGAGAATGATATACTGCTGTGTGTACATTTCATTCTAGTACGAGGTTGCACAATATT
AGTTATGAAGGTATTATTTTATTTTTAATGTAAGTTCTGATTGCTCTATTTATCTTCCCA
TCTGCTTCAAATTTGATTTTTGTACCTTTTGCTAGGCTATCGGGCAAGTTCTTTTTCTTC
GTCCTTATGTTAATGACTTCAGCACAGAATGGGTACTAACATCTGTGACTCTATTGACAC
TTGGATCGGTGTTCACAACTTTCCTTGGTGAAACAATATCTGAGTTGAAACTCGGGAATG
GAACATCTCTTCTTATATTTACAAGTATAATATCGTATTTGCCTGCATCATTTGGAAGGA
CAGTTGCAGAGGGATTTCAAGCAGGCAATTATGTTGGACTTCTCACAATCATATTGTCAT
TCTTTTTCTTAGTTCTTGGGATTGTCTATGTCCAGGTGAGAAAATATACTTTGCTTTTCA
AGATAAATATAAATTTTGTCCGAGTATGATTTGCTTAATTCAGATCATTTTTATGGTTTC
AGGAAGCTGAGAGAAAAATACCACTCAACTATGCTTCTCGATACGGCAGTCGAACTGGAG
GACCCCAACGTTCTGCATATCTACCTTTTAAGGTTCGTAATGTTTCCATATGGTTTCATT
TAATTTCTGCCTCTCCACATGTTGGACATGGATAGATTTTAGGTTTCGAGATCCGTTAAC
GCATACAGAACACAAATAAGCCGGGGTAGTAGTTATAGTTAGAGAGTAGCCAATTGTTTC
AAGTCTTATTTTGATTAAAGTGAAAATAACTCAATCTCTTCATACTATCTTGAGACGTGC
ATGGTTTTTTGGAGTGCAAACAAGCGTTTGCACATCTTTTCATGAAGGGGAGAAGCAACA
CCGTAATTAAAGAGTTAAGAAATCTAGTACATTCACCCATATGCAGAAAACAACATTTTT
CAGCACAAGGACACTTAAGTTGAGGACGGCAGCGGACGAAGAATTCCCTGCGCGGGAGCA
CGCGCGGCGCTGTAGATACTAGTTGAGTCCCCGGCAAGGCCAGCAAGCATGTTCCCCGAC
TCAGCAGCAGCGCCAACCACCACCGGCGCCACCAAACGTGAAGATGATGACATGGAGTGA
TGGACTTGGCGTCGGAGTGCTTTGGCGGGAGAATGCTGGGGTGGGAGACTCGGGTGGCGT
CTGCTCCATGCGGGACCGGGCGAGGAGGGAGCGCAAGCGGCATTTTTTGTTGAGGGGGAA
GGGGAGATGGCTAGGTCCGATTTCTCTGTAATTCCACCGACGGATAGGGACAATCATATT
TACTCTTTCGTTTTTTGGCTCAGAATCTCGGGAAGTTGGGGTTGCCTCACTTCTGTCCAT
ACACATGAATTGAGAGCAGCTGGCTGGGGAATCGATGGGCCAAAGCCCAGTTTTTTTTCT
TCTGAATATGCCTACCCCAACTTGTTTGGGACTGAAGGCTTTGTTGTTGTTGTTGTTGTT
GCATTAAGAAAGGAGAAGAAGGGGAGCCTTGGCGCAGCGGTAAAGCTGTTGCTTTGTGAC
CATGAGGTCATGGGTTTGAGTCCTTGAAACAGCCTCTTTCAGAAATGCAGGGAAAGGCTG
CGTACAAAAGACCCAAAGTGGTCGGACCCTTCCCCGGACCCTGCGCAAGCGGGAGCTACG
TGCACCGGGCTGCCCCTTTTTTT