Contig Data
morexGenes
Links



Map Locations of contig_166666 (4207 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_166666

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_25024 1 250 bp AK369875 Not available Available None
MLOC_25021 1 911 bp AK250051.1 Not available Available None
MLOC_25022 1 380 bp AK369875 Not available Available None
MLOC_25023 1 563 bp MLOC_25023.1 Available Available LOC_Os02g27120.1, FRAME:-3, EVALUE:2e-52, 13102.m02948 protein retrotransposon protein, putative, LINE subclass





CDS Structure of MLOC_25024






CDS Structure of MLOC_25021






CDS Structure of MLOC_25022






CDS Structure of MLOC_25023






Contig Sequence (4207 bp)

>contig_166666 4207 assembly3_WGSMorex_rbca.fasta
GGATGTATATATATAGACGCATTTTATTGTGCTTGTTCGCTACTTAGTGGTTACTTTTTA
AATATTTACAAGCTTTCGTTGATTAGTGTTAAGCAATTAGCATGCATGAGGTGGTTTGAG
TCGATCCAGATTTCTTCCTATATAAGACATCATATAGTTCATATTAATGTAGACGTCAGA
TACCAATTCAATTTTGAAGTTGAGGCGGTGCACGTGTGTAGAGACCCAAGATGGGGACGC
TGCTACGAAAGCTACAGCGAAGACCCAAAGGTTGTTCAGTCAATGACCACACTCATCTCT
GGTGTGCAAGGTGACGTTCCGGCTGGTTCTGAGGGAAGGCCATACGTTGGTGGAAGGTAA
TATACATTCAACACGGAACTTGTGTTCTGTGATTTAGTCTGAAGAGACTGAGCTAACTTC
GTTGTCACAATTGGTACACTGCAGGAAGAAGGTTGCTGCATGCGCAAAGCACTATGTTGG
TGATGGTGGTACGTTTATGGGGATCAACGAGAACGATACAATCATTGACGCCCATGGGCT
GATGACTATCCATATGCCTGCTTATTACAATTCTATCATCAGAGGTGTCTCCACTGTTAT
GACCTCGTACTCTAGCTGGAACGGCAAGAAGATGCACGCCAACCATTTCCTTGTCACTGA
TTTTCTGAAGAACAAGCTCAAATTTCGGGTCAGTTGCTCATTAGAAAGCCAGGAGAATTT
CTCTCTCTTGTTTTCTTCAGACATATTCAAAAGATACTGATATAATCAATTTCTTGGGAT
TTCATGCAAACAGGGTTTCGTGATTTCAGACTGGCAAGGCATTGATCGGATTACTAGCCC
TCCAGGCGTGAACTATTCTTATTCAGTTGAGGCTGGAGTTGGTGCCGGTATTGACATGGT
AAGATTATGCAAAATTACATACTTCAGTTTTTTCTGTGCAAAGCATACTTATCTGATACT
CGCAAGGCACGATAATCCCTTGCTCGTAAATTCAACTTCAACTTTTTCAGACAAAACTTG
AGTAAATTGCTTGCTCGTAAGGCACGATAAGGATTTCTTATCTGATACACCGTTGACAGT
TGTTATCTCGTCTAGAACTAATACAAATATATCATTTTCTTCCTTTCTGATCATGCTCTT
GTACACATTATTTTGCAGATCATGGTTCCTTTTGCCTACATAGAACTCATTGATGATCTG
ACATACCAAGTTAAGAACAACATCATCCCCATGAGCAGAATCAACAATGCTGTCTACAGG
ATTCTGAGGGTGAAGTTCACCATGGGTCTATTTGAGAACCCCTATGCTGACCCAAGCCTC
GTTCGTGAACTCGGGAAGCAGGTTAGTTCTCAACACCACATTTTCTTTCTATCACACTCC
ATTTGTCAAGATCCATGAATTCTTACTATAAATTCCTTCCCATTGTTAGGAACACCATGA
TCTTGCTCGTGAGGCTGTCAGGAAGTCATTGGTATTGCTGAAAAATGGAAAATCTGCCTC
CACTCCATTGTTGCCTCTCCCAAAGAAGGCCGGTAAGATCCTCGTCGCTGGAAGCCACGC
CAACGACTTGGGCAACCAGTGCTGAGGATGGACCAGCACATGGCAAGGACAGACCGGCAA
TGACAAAACTGTCGGTAAATATTCATTGCTTGTAGTACTAATCTGTAGCAACATCGTCGA
TAAGTGGAACAAAAGTTGATGGAATCATCTGATGAAACGCAGGGACGATGATCCTTTCGG
CGATCAAGTCCATAGTTGACCCCAGCACGGAGGTGGTCTTCTCAGAGAACCCTGACAGCA
CACAAGACGATACCTTCATTTCATGGGTATACAATGGGACTGAAGCTTGAGCAGTTCATA
TTCGATGCATTCAATTACTCCCCATCCACGAAACTTTTTGAGGTTCGATTTCCATTCTGC
TCCCTCTTCTTCTTTCCCCCAGCTTCTCTGGGCTTGAAAGCTTGAGATACTCACCGGTGC
ATATCCGAAAATCTACGTGCTATGTGAAGAGGAATTTGCTACAGTGAAGAACGTGAATGG
CTTAGCCTACGACACCCTAGATTCGGCCAAACTGATGCTGCTCCGACTCCACAGCAGATG
GGTAGTCACTGCTGGCTGCTTCCTGACCCATTCTATGCCCTTGTACATGACATGTAATTC
CTCACGTTTTCTTGTACCCTGAAACTTGCAAAGCTAAACCACAACTCAGGCATTTTTTGA
GAAAACGCAAAAGACTTTTGCATTTCATAGTATTGAAAAGATAGGGTCTTAGGTTACAAT
CCTCCTAGGAGGTGGTTACAGGGCCAGGAAAAGAAAATTAGTGAACATCCCAAGTCTGCG
GGATCGCGGCTTTGAGGCCTAGCGCGCTGGCCCTGGCCCAAAGCGTCGCTTCCTCCTTGA
TCTTCGCAATCAAGCTCGTGGTCGAGGGTCGTTCGTTGTCAAACACGTAGCCATTTCTGT
GTTTCCATGTCATCCAAGGTACGAGCAGTGTCATGGATGCGAGGCCTTTGTGCATAAGCG
TCGACGTGGCTCGTCTCGCGGTGGACCACCAAGCATTGAGCGATTCCTCGCCATCAGGTG
GGCGACAGGGGATCCTTAGCCAGGCCAGGGTCTCATGCCATACTTGTCGAGAGAATGGGT
AGGCGAGAAGGAGGTGGTGCATAGTTTCCGTTTCCTGGTCGCTGAGGAGGCATCGTGGGT
GGTGCTGCGGCCCTCTCTTGGCTAGCCTGTCTGCCATCCAGCAACGATCGAGTCGGGCGA
TCCAGTGGAAGAAGCGGACCCGCGGCGGTGCCCAACACTTCCAGGTGAGCTTCCAGGCAC
CGCATGGGATGGAGCCGTGGAAGGTAGCCTTGTAGGCCGATTGCGCGGTGTAAGTGCCGC
TAGTGGTCCACTTCCAGATCAGGCGATCAGGCTCAGCAGAAGGTATTGTGCCAGAGCTGA
AGGTATTGCCCAACCTCTTGGATCCCAAGCACACCATGGATATCACGTGCCCACTTATGA
GCCTGCAGCCCATCAGCCACAGTTTGTAGCTTGCGGCGGTGTTTGGGGATGCATGCATAC
AGCTGGGGCACGATTTCTCGGATGGCATGCCCATCCAGCCATCTCTCCTCCCAGAAAAGG
GCCTCCTGGCCGTTGCCGAGCTGCATGGTGGTGGAGGCAAAGAAGAAGTCGCGCTCCTCC
GTCGAGAATTGCAGGTCGAGGCCGCTCCAGGCTCTGGTGCTGTTAGTGCGACTAAACCAG
AGCCAGCGTAAGCGCAATGCTAGGCCGGAGCGCTCCAAGTCCCGGACACTGAGGCCACCC
AAGGAAATTGCCCGCGCGACGCGTTGCCAATTGACATGGCAGTTACCGCTCTGGGCATTG
GCACGCCCCGCCCACAGGAACCCTTGCTGGATTTTCACCAGCGCTTTGATTGTCTACTTC
GGTGGAGCTAGCACGAGGAGCTGGTGGATAGGGATCGCGCTCAGGACGGCTTTGACGAAT
GCGAGGCGACCCACCTTGTTCATGAGGTGTGCCTTCCAGCACGGGAGCATACCGACGGTC
CTGTCGACGACGGGCTGTAGCTGGGCAGCAGTTGGGCGCCATAGTTTCAGTGGGATGCCC
AAGTAGGTGATGGGAAGGACCACGATGGGGCATCCCAGCAAGTCGACAATAGGTTTGGCT
GTGGCGGGGTCGTAGCGGATCAGCGTGGCTGTGCTCTTCAGGAAGTTAACCTGGAGTCCA
GAGGAGCGCTCGAAGAGTTGCAGGATGCTCTTTATCGCCTCGATGTCGCTGTGCGTGGGG
TGACAGAAGAGGATCACGTCGTCGGTGTAGAGTGAGACGACGGGGAGTGAGCGGCGGGGG
TGAAGTATCCGTAGGATGCCGAGCTCGGTGGCGTGGTGTAGCAGGCGCCTAGGGTGTCGA
CCATGAGGACAAAGAGCTGGGGCGACAGTGGGTCGCCTTGTCTCAGGCCGCGGCGGTGCC
AGATTGCGGGGCCAGGCGCACCATTCAGGAGCACCTTGGTGCTCGCTGTTGAGAGGAGGA
TCGCCAACCAGTCCAGGAAGCGATTGCCGAACCCGTATTGGCGCAAGACCTCGAAGAGGA
ACGCCCAGCTAATCGAGTCGAAGGCGCGTGCCAAGTCCAGTTTCAGGAGCACGTGCGGGG
CTCCGAGTTGGTGTAGCAGGCGCAGACTACCGGATGAGGACGAAGTTTGTTGGAAATATG
CCCTAGA