morexGenes - Barley RNA-seq Database

Contig contig_166265

Source Contig contig_166265

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_166265 (2625 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_166265

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_24944	1	519 bp	MLOC_24944.1	Available	Available	None
MLOC_24943	1	782 bp	MLOC_24943.1	Available	Available	LOC_Os05g49440.2, FRAME:+2, EVALUE:4e-92, 13105.m05291 protein DUF1264 domain containing protein, putative, expressed
MLOC_24945	1	126 bp	None	Available	Available	None

CDS Structure of MLOC_24944

CDS Structure of MLOC_24943

CDS Structure of MLOC_24945

Contig Sequence (2625 bp)

>contig_166265 2625 assembly3_WGSMorex_rbca.fasta
CCCTCTCCCCTCCCCACCGCTTGCCCGACCTGCCTCCGTGTCCTCCTTCTTGGCTACCAA
CCAGATCCACCACTTCTGCGCGCACCTCAACCAGGACCTGCCTCCCCACCCCTCCACGGC
TATCCACCAGATCCACCAGCACCTGTGCACATTCCACTTCTACGGGGACGACATGACGCG
ACATGTGGAGACGCACCACTTCTGCGCGCACCTCAACGAGGACGTTCGGCAGTGCCTCAT
CTTCGACGGGCCCGACGCCGACGCGCGCCTCATCGGCCTCGAGTACATCATCGTCGAGGA
GTTGTTCCTCACACTGCCCGACGAGGAGAAGCCGTTGTGGCACACCCACGAGTTCGAGGT
CAGGGGCGGCGTGCTCTTCATGCGCGTCGTGCCCGACGTCGTCGAGCACCGCGACCTCGA
TAAGGTGGCCAGGACCTATGGCAAGACCGTCCACTTCTGGCAGGTTGACCGCGGCGGCGC
CCTCCCGCTTGGCGTGCCCCAGATCATGAAGGCCCTCACCCGGGAGGGCCAGCTCCGGCA
GGACCTCGCCGACTGTAAGCATGGCTTTGTTTTCTGGTTCTTGGTTCATTCGCTGAGTGT
CGTGTCGGATTACTGATGATCGTTACGTGGTTGCAGGTGTGGAGAGGAAGTTCGGCATGT
CGTTCCAGAAGGATACATCCTTGAGATGGAGGAGGCTGAGGCCATGGCACGCGATCCAAG
CTCGTGCGCGATCTGTCCTCCTTCGGCTACCGGCGACTACTCCCGTTCCTCAACCAGATG
GGCAGCAAGGGTAATGCCAGTGTCCCTCTTCCCTGATTTCCCTCCCCCTGTGTTCACGAT
GCTTGTACTCGCAGTTCATTCCTCATTTCCCCAATGTGCTTTCCAGGTTCAGACATCTCA
AGCGTCAAGGAACTTCCCTCAGAAAACAAGGTCTCTATCCCAAACAAGGAGCTTGGCAGA
TCTTTTGCAGAATGGACACAATTGCAGCACAGTTTGCACAACTGAATTTGTTTGTTTAGA
GTACTGTTGCTGCCCCCAAGAAGGCCACTTCCAAGGAGGTAGAGGAGGAAGATGAGGAGG
AATCCGACAAGTCCAAGTCAGAGATCAATGACGACGATGACGATGAGGGTAGTGATGAGG
TATAACGCACCACATCCTGTGTACTATGTACTATCTCTTGTATCGAACTTGCTAGGCATG
CTTTTTTGCTTCACCAGAACAACATGGTTCACACCTGAGAATAATATCCATCCACCCCTC
CTGCACTCATAAGAGCTCAATTTAGGAAGTTATTTCTCACCAATAGCATCTTGCCAGGTA
GTTTCCGGTGGCGCTGAACTTGCCATGTTGTTTCTCTCCGATAGTGTGTTATTTAACCTT
TACATATAACATTCCTTAAGCTAGTATTGTTGTAGCACCGTACAATGTGTTCATGCTATT
ATTGGTGTGAACAGTCTTGGCACCTAGTATCAATGGTTCAGTTGCGGAATGCAGAGCTGT
TTGTGCTAACATGATACATATTAATGTTTTATCGAAGCCATGTTTGCTTTTGTTTAAGCG
GGCACTGTGTAGTCTGTTGGAAGGTTGACTTCCATTTTGCTGCTGAAATACCACCATTTC
TGTCTTACAACTGCTCTGTTCGATAATCCTTCACCTGTTGTTTTATGAAGATGGCCTTCA
GCTTCTCTCCGTTGCCAAAACAAAGTTGTACCATCAGTTTCGGATCAGCCTGGCTTGGTC
ACTTGTTTCACCGTGATGTTGGTTTCTGTTATTTTTATCTAAACCATTTCTGCAACTCAA
ATTATTCCCACCTGAACAAGCACCATTTGTGTGTACATGCCTTTGCACAACCATATGTGA
TCTGTTTTGTGCTATCAAACCATTTCTGATGGTTGTATGATATAGTAGTCGGCTGCTTTA
CTTAAAGTGATGATAATTTTTCTGTGTTTAGTTCTGCTGCATGATTAAGGCCCTGCGCAC
TACTAGCATTTAATTGTCTGCCTTTTAGATGTAACATTGCAATTCAGATAATAAGTGATG
TACAGTTCTGTACTGTTATGTGTCTTTGGCATTTTCTTAGAACATTTTTGTAGCTTCAAC
TATGAACATTTCTGTCACATACCGTATCTTTAAATTTGAATCTTGATTGCTTCTATTTAC
TCTGAGTCTAAGATGTGTAGTACTAGCATTTTTATTCTTATATGTTCATTCTTATTCATA
TATGTTCATTCTTATTTTTTGCATAGGTGAAGTGTGAATCCAATACCGAAGCTGTGAAGC
ATATCAGCAAAGAGTAGCATATTATGTATTGCAATTGTAGGCAATAGTAGGCTTATTTGG
GTTGTAGTATAATGTAACGATTGTAATAGACTAATGTAGTGTTGTTTTGGACGAATTCCA
TTTTCTCTTTGGATTGTTCAAAATAATGAATGTGTATGTGATTTGAATACCCTCGAAATG
GTAACCTGGCAAAGGGGTTCAAGTTATAATGGTTGTTTCACATAATTTGAAATTTCTGTT
GTGTGGGACCGATTTCGAGATCAGGATGACATGTGGGACCAATCTGACTAGTGGGACTAG
TACAAAAATAAAATGGCTAAAAAAGAAAATCAATAGAAAGTAAAA