morexGenes - Barley RNA-seq Database

Contig contig_165536

Source Contig contig_165536

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_165536 (1586 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_165536

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_24786	4	784 bp	MLOC_24786.4	Available	Available	LOC_Os02g15710.1, FRAME:+2, EVALUE:3e-42, 13102.m01752 protein plastocyanin-like domain containing protein, putative

CDS Structure of MLOC_24786

Contig Sequence (1586 bp)

>contig_165536 1586 assembly3_WGSMorex_rbca.fasta
CCTATATGTGAAGCTCGACCGTGTTAGTGGATTGGTGGGTCTAGTTTGTTAAAATCACTT
GACGACTAGGGCTTTAGGGCACTAGGCCTTAGGGTCATGTGCATGAAGATTTCTCGGATG
TAATCGACAAGGTCAAGCGTGCACCGCGGAGCGTCTCATTTTGGCGGTAGTAGTCGTTCG
ATCGTCCAAGAACCTCTAAGTAATTTTTAGTATGTTTGGGATGCGTTGTATTTTTGCTGA
AGTATTTAAAATGAGAGTCTGAATCCGATTGGCTGTGATAGACCTTCAGACACGTTTGAC
CTTAATGTTCAATGTATGGTTTGTTGAATGGCAAACACTTATTCCTACTCGTATATTTCC
AATAGCTAGTCCAAATAGCTGTTGGTTTCCATGACAATATGATGCAGACACAATCCATTT
CTTCTGTCACCAATTTTTCATGGGCTAGTACACCATAAAGATTTGATACGATTTAAAAAT
ACATAGACACACATATGGGCGAGATCTATTAAGCAGTGACCGCGATCTTCATGCCCTTCT
GGCAGTGGCCCGGAACGCTGCAGAGGAAGAATGCTTTGCCACCGTGGACAAGCTGGATGT
GGTCATTGCCGGAGGTGTACGTCCTAGACGGGCCAGAAACCGTACATGAGTTGTAGTCGC
CTTCTCCCACCTGCACCACGTTGTGCATACTCGGGTTGTACTTGAACACCATGTGCATCA
GTTAACACAAGAATACAGATCACAACATATATTCATTCATATATATACTTCAAGTATATC
TAATCATTTGATCTTTAGAGCTCTCACCAAGCACGTTGCCGGACTGGATGCGCTTGCCAT
TCTCCCAACCGGAGACGCCGAAGCTCCATCCCTTGTTGTCACCGACGGTCAACTCTTTGC
CATGCACAACGGAGGTTGCACAACAAACAGCCAGAAGCAACACTACAAGGGTGGGTACGA
TCGTTCCCCGTGCCATTGAACGAATTTCCCTTGACTTCTACCCACAACCGAAGATCACAA
GAACAACAAAAGGAAACAATAGTCGATTCCTCAAGTGATGATTTGTGTTCGATCTCCGTC
TTGTATGATATATATAGGCTTTTAAAGCGGCCAGCTAAGATCATTGTTTTAATGTGCTGA
AATAATGAGAATCGTCCTTCAAATGAGAAAATTCAACAATCATGTTCTGGAACATTAGTT
AGTATATGCTACCAAATCCTCCAAGTTATATCATGAGATCTAGTATTAATGGAAATGAAC
ATGGATGCATTTATTTCCCTACTTTCAAGATATACTTAATATTTCTTATTCCTGGATGCA
TTTGTTGTGCATCAGATATTTATATATACTAGTATTAGAAGATGTATTTGTAATAAGCTA
AATTTTGGAATACAAAATCATTTTTAATATGGAGTAGTCACTAAGGTGGACTTTTAACCA
TGGCTGCTAAAGGATGATCAAAGGCCATGATTTGCGATTGTCTAGTCAAATCATTTATAA
TTAACAACAAATTTTCAATAAGTGGAGTATTAGTGAATTTGGCATGACTTCAGAAATTTG
AATGCCTTTGGTTTGTATAATAATTT