morexGenes - Barley RNA-seq Database

Contig contig_1652580

Source Contig contig_1652580

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1652580 (296 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_1652580

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_24732	1	160 bp	MLOC_24732.1	Available	Available	LOC_Os08g08990.1, FRAME:-3, EVALUE:1e-18, 13108.m00942 protein Cupin domain containing protein, expressed

CDS Structure of MLOC_24732

Contig Sequence (296 bp)

>contig_1652580 296 assembly3_WGSMorex_rbca.fasta
TTAACTTCCATCGGGTTCTTGCAAACGAACCCATTGACACGCACTGGGTGCATAAAGGAG
ATGTAACATGTGAGATTAGAAGTTACAAAGTCATTCCAACTTGCATATAATTTTCAGAAT
CTAATAGCAACATATGTATCTGGCGATAACATGACATGAAACCATGGAGTACGTTGTACC
TGGTGAATGCATGTCGGCGACACAAAAGTCCTGGAGTGGGTCAGGATCGGACGCAATGGC
CTGCCATGAGACCAAGGCAAGAAGGGCAGCAAGGAGAAGGATGGAAGAGGAGGTTG