morexGenes - Barley RNA-seq Database

Contig contig_164950

Source Contig contig_164950

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_164950 (2632 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_164950

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_24628	1	590 bp	None	Not available	Available	None
MLOC_24629	7	2306 bp	AK360194	Available	Available	None

CDS Structure of MLOC_24628

CDS Structure of MLOC_24629

Contig Sequence (2632 bp)

>contig_164950 2632 assembly3_WGSMorex_rbca.fasta
GGGCCACCCCATCCGTCCGTCTTCGTTGCTGGCGGCCTGTGGCCGCCGTCGTCCGCTCCT
CCCGATCTGCTCCGATCTACCACTACTCCACAGCTGTTAATCCTTGTAGTAAGTCAAAGC
GTACAGTAGATTACTATGCCTTCGGAAATATTTTGACGACGCGATCTGAATTGGTGGTGA
GGAAAAGGTTGTGTTTTGGAGACCATGTTCATGCCCAGAACAAATTTCAGATGGTAGGCT
CACCGATTGATTGATTGATTATATTTATTGTAGTCTGTCAAGGACGACTGGCGCGCATGT
TTGTAGAGTATCACTTATTCTGTTTGGGTACACTAGCTCTACAGTTTCCGTGTCGTTTTG
TAATGTATCCTGATGGATGCTTATTCTGATTGTGTACATTCCGGCTTTGAGACCGTGGCA
TATTCTGATTAAAGCGGATTATGACAATTTACTGGTTAATTTGTTGCACAGGGAAGCTGT
GCATTGAAGTTGGTCCGGCGTCAAAGGTTTCCTTCATCTCTGAGGAGTTGTGCATTGGCT
GTGGTATTTGTGTCAAGGTATATCTATATGTGCTTGCAACTTCAACACAGCTACTAAATT
GTATGGTCTTTGTATGTGCTCTACTGATTAGTCTTCTCATTGCTCTGCAATTAATCCTTG
GTGTAGAAATGCCCATTTGATGCCATCGAGATCATCAACCTCCCAAAAGATCTGGAAAAG
GATGCAGCAGTTCTTTCTCGGGATTGCACCTCAGAATTCTTCAATTCATTTCCAGTAAGT
CCAGATAAGCTCTTCAAAGGTATGATAGTTTTCTAGTGTCTCTGTCCCAGTAGGCTTATT
AGCAATATCCCCTATAGTTAGCCTTTTCTGCCACTTGGCCTCCAAACAGCTTATAGCAAT
TGTTGATCGTACCTCGCGAATTAATGCCTCATCATAGTTTTCTAGTGTCCCTGTAAGCTT
ATTAACTATATCCCATATAGTTGGCCTTTTCTGCCAATCGTCCTCCAAACAGCTTAGAGC
AATTATTGATCATACCTCGTCAATTAATGCCTCATGATAGTTTTCTAGTGTCTCTGTCCC
AGTAAGCTTATTAACAATATCCCCTATAGTTGGTCTTTCCTGCCGATCGGCCTCCAAACA
GCTTAGAGCAATTTCGATACATGTCTTTACTTGCTCAGAATACGACTCCAACAAATCCCC
TGACGCCGTTGATTGTAGCCTATCCCTCCAATTATCATGCACCTGCCAATTCAGAACACA
CCGAGTGATTAGTGTATTAGATAGAAGAAAACAGACAAGTACCAGTGACAATATACAAAA
GTGCTATCTTAATTAGTAGACGCAATTCTTACAGTCTTAGTGAATTGATCGGAGGTCGTT
TAAGCACTTCTGGAGTAGCCTGTACGTCCTGCAATTATCTGTATAACCACAACACCGAGG
CTGAATATGTCCAGTTTACTGGAGATTATTCCTTCATTTATAAACAGACTAGAAGATGAA
ACAGCACAGGTAAACAGTACAGGAAACAAGCGATGACCAGAGCAACAAGCAATGTTCAAT
CTGTCTTTATGTTGCTATTTAGTTGTCTGCAGGAGCAAATCTCCCACCACGTCTTCAGTT
CAGGATATATAATAAGTACTGTAATGCAATGTCTGTAAAACATAAGATGCATTCTCACGA
TGGGGTTTCTAGTTTGAAGGTAATAAAGCTTAACAGCTGGGCGATCTGCATGCATGCATG
GGCGATGGGCCGCGCCGGTCTAAATTCAATACGGGGGCTTGACGAGGATGCTCCTCAGCG
AGTTGGCGACTTGGCCGCCTCCAGCATGCTCCACAAACTGCGCCGGATTGAAGAAGCTAC
CATGGCACACACACTTGATCCTCACGTCGTCAACTTTGCTGTACTCGTACAGCCAGCCTA
CAGCCCTCCTGCCATTGGGGAGCCCGATGGTCCACACCAATGGCATCTCCTGCACCATCA
TCGCGGGCATGTCTGGAGCATGTTGCCGCTCTCCCCCAGAACCAAGGGCTGCCGCTACCA
CCGCTGATGCTGAAGAAGAAGCGGTTGCCACGACGCCGTTTGTACCCACTGGCCAGGACA
TAACAGCTGCTGATAGGCTCCGGCCTTCAGCGCCAGGAGTTCCTGTAAGATCAGACGCCA
ACAATACCGTAGGGGTCAGCAGAAGCAAATCTGATATATAGTAGAATAAGAACCAACCGC
CTCTGAACAACAGCATGTATAGAACAGTCCGAAACTATCAGTAGTTGTAAAACAACGAGG
ATTAGTAGCATATATAGTGAGTTATTGCTATCTCTGCAATTCCTGTTCAATTACACGTTC
AATAGGACAAACACTGTAACGGCATGGTTTTGATCCAAAGGGTAGGATGAATCCAAACAA
GCCACAGCTTAATTTGGTGAGTGTATATATATTGGTTGTTTTGGTAGTTCAGACGACAAA
ACCAAAGAGTACCTTAAAGATATCCAGATAACTTATACTAGCAAAAGGGCCCATGCGNNN
NAACGGGAGAAAGAAATACCACACGACACACGCTCTTAATTTATAAAAAANNNCTATAAT
TTGAGAATTTATAGTTACGATACAAATAAAGATGGTCTTATCCTACAAAAAT