morexGenes - Barley RNA-seq Database

Contig contig_164025

Source Contig contig_164025

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_164025 (3221 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_164025

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_24233	1	472 bp	MLOC_24233.1	Available	Available	None
MLOC_24232	1	921 bp	None	Available	Available	None

CDS Structure of MLOC_24233

CDS Structure of MLOC_24232

Contig Sequence (3221 bp)

>contig_164025 3221 assembly3_WGSMorex_rbca.fasta
CGGCCACGGCCCAGCCAAGCGCCAAGACGCCCCCGAGGCCCAAGGCAGCCGCCAAGCCCA
AGGCCAAGGCCCCTGCCAAGACCAAGGCCGCAGCCAAGCCGAAGGGCCGCCCCGCCAAGG
CGGCCAAGACCTCCGCCAAGGACGCGCCAGGGAAGAAGGCGCCGGCCGCCGCCGCCGCCC
CCAAGAAGCCGGCAGCCAGGAAGCCGCCCACCAAGAGATCCGCACCGGTGAAGAAGTCCG
CGCCCGCCAAGAAGGCGGCGCCGGCGAAGAAGGCCCCCGCCAAGAAGGCCAAGAAGTAGG
CTCCCGCGTGAGAGATCCTAGGGCTTGCCGGCTTGGCGATAGATTTCCAGTAGCTGCTTC
TCCTGTTCTGTGCTGTTAGTCGAGATGTCCGGGCTGTGTCGTTGTTGCTAGGCTGTAAAT
TTGAAATCTGGGTTGGGGCGCGCTGGTGATCCGGTGCACCCCTTGGTGTGTGTGTCTCTG
TAGCGGTGACGACGATCGCGTTGTACTAGTAAGATTATGTATTTGTGTAACTGATTTTGG
GTAGTTGAATCTTCATTTGAGAACCATCCATTTCAAATCTGTCAAATCTACATGGATCTA
CCACTCTGTTTTCCAAGTTGGTTCGCGTACGTACTGCAATTCTTGGCACTGTCTGTCTGA
GATATACGAGTAGGTATGATGTCGAAATTGAGATCTGAAATAGATGGAGTTCGTCTGGTT
CTGGCTTTGTATTTGATGGGAAATGCCAAGCAAAATCTCTGACTGATGTTGATTCAGTCC
AACGTCTAGTAGGTGGCTTTATGAGCTGTAAATAAGAAGAAAAGGCTGTTGCGTAGGTTA
CCAATAAATTGAGATATGTTGATTTTAGACGTAGTGCGTTGTTGATTCTGCAGCAACTGC
ATCTGCGTTAATGGCCGCCCTGATTTTCCCCGCAGAGGGAGGTTAGGAAAGGACGGAGGC
GGGCTTGAAAAGCTGGAGATCGACGATGTTTTCAGCTATGGCGGGAGCGTTTGCGGAAGG
CGGCCTCTGCCTTTGTATAATGGTCCAGAAGTACAGAAGATTCGCAAATAACCGTTGGCT
CAGAAGTACAGAAGGAGTAATAAGTAACTTGGCAGGTTGGCAGGGCGTTCTGGGTGATGC
CTGCAGACTGCACTGTTTCCGTTTTCGAGCTTCAACTCACCAACTGATACGGCCCTGGAT
TCACTAGCACGATCTATTGGATGCAAATCGCTACATTACATGGATTTAGTAGCTAGGTTC
TTTGGCAGCGAGAAGGGGTAAGGGGATCGAGAGCCGAGGGATGGGAGAGGAGGATACATG
CCTGATTGGATGGATAAATGGACAGTGATATTTCTAGATCCTAGTCTATTATGATTCAAG
GGTGATTTCTGCTTCTGCAGATGACCTCAGTGTTAGGGATGATGAGAAGGATTTGAGGAA
TATTCCTCGGGAGTTTAATAAAGATATTAGTCAGAAATATTTTGATTTGAATATGGACGG
TGCTCGTGTACCGAAGAAGGACAGTGTGACTGGTGAACCTGCTTCTGCGGGAACAGTATA
CAGAGATGCAGATAAGGTGTGGCCCTCTTTGGGTCGTCAGGTTGCTGGTAAGCCGTTGAT
ATGTGGACCAGCGATGAAAAGGAAAACAGAAAAGAGAAAGACGCTTTCGTGCCCATATAA
CAGAAATGAAGAGGAGGTGGATAACTTTTATGGTCAGCTGTGGGTTATCCCCTCCACCAG
CCGCCACCGGACAGATCGTGGCCATCCCCCTCCCTCTCCTCCCCCAAAACCTAGATCGGC
TTTGGGCACCCATCTGTTCTGGGTCAGGAAGGACTTATTCCAATCTCGGTGCTTCTCAGT
AGAAGATTGCTTCCCCATACTTCGCCGTGGAAGATTCGATCCTATTCCTACCAAGTTCAA
GATCTGATGTGAGGGAAGTGGTGATGGTGGCGAATCCTTTGCGGCTGTGGTGAAGAAACC
CATGGATCCCCGAGCTCAACAACGCCCTAAGAGGCAGCCGACTAAGAAAGGAGGTCAGGG
CGCTCCTCCACCACCCCATGCTGGCCATGTGGCTGTGGTAGCACCAGCAGCACCTAAGGC
CAATGCACGCAATGCTGCTAAGGGAGTCCCGACCAACAATATCCAAGCTGCAGTGCCTGT
ACCTCCTCCAGCCCCTGTTGTGCAACCTTTAGACCCAAGGTACAAAGACATGATCTGTTT
TAATTGCAGTTGGCCTCGCCACTATGTGGGGAATTGTGTGGAAGCCAAAAAGTGTTTCAT
ATGTTCTTGTAATCATAATGTGAACAATTGTGTAGCTTGGGCAAGACTGCAACCTACTGC
TGAATACTTTGGAAGTACTACAGTAGGCCTGGGTTTCTACAACATTGACATACTTGTATC
TTCTGAATCCAATTGGCTAAATTTCAGAAATTGTGCAATTCTCAAAGTCTTGAAGGGAGA
AGTTTCTGCTTCTGATTTGATTATTCAGCTTAATGGCATTTTCTGCAAAGGTAAAGAGTG
GCCATGGCAGATTAGGGAGTTGGAAGAGAAGAAGTTTGTGCTCAGATCCCCTTCATGGAA
AAAAGTAGAAGATCTGATTGAGTTTCCAGCTTTTGACCTACCAACTGATGGAGTTTCTGT
GAAGATTTGTGAGTGGGCTGGAATGCTTGAACCTTATGGAGAACTAACTGAAGCTTGGAT
CCAAGTAGAAGGTATCCATCCTAAGTGGTGTGCCTGGAAGGTGTTTGCCCAAGTTGCTTC
TTGTTTTGGAATATTAGAGGTAGATTGGAATGGAAACTTCAAGAGTTTCTATGAGAAAAA
TCAGAATTAAAGTAGCCTGTAGGGATCCTACCAAAATTCCCTTTGAGAGACTCGCTGAAA
TGAAAAAAAAGATGTACATCCTGGTGTTCACAGTGGAAGGCTTTGACTAGGTTGGTGACG
GCTTTGATGAGGATGATGATGATCCAGATCTTGATGTTGAAGATGAGGACAAGCTGGAAG
ATGAATCTGATATAGCTAAGGATTTTATGGATGGGGAGAATGATGAACCTATTGATGATT
TGGATAGAGCTAATTTCTCTAAGAACAAAAGCCCTAGTTCTGGAAGTAAGGGAAATGGGA
CTTGTGTCTGTGCAGTTAAGTTTCATCCCATGTTAATGGTTGATGAGATGCATGAACAGT
GTATTGAAGAGTTTTGAGCTAAAACCCCACCTATCCAAGTG