morexGenes - Barley RNA-seq Database

Contig contig_163889
Source Contig contig_163889
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_163889 (7260 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_163889

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_24178	1	2995 bp	None	Not available	Available	None
MLOC_24179	1	4758 bp	None	Available	Available	LOC_Os08g37490.1, FRAME:-1, EVALUE:9e-23, 13108.m03952 protein 14-3-3 protein, putative, expressed
CDS Structure of MLOC_24178

CDS Structure of MLOC_24179

Contig Sequence (7260 bp)

>contig_163889 7260 assembly3_WGSMorex_rbca.fasta
GCGACATCCACGTCCTTTCACATGCGCTTTTGTGTGGGTGGGCATACGACTAATTGTCCA
TCGAGCAATCGACTGCCCCGCAAATCATCAATTTTGTGCAAGTCGGCGTGCCATGGGCAT
TTTTTTAGAAAAGGAGGTTAAACCCCGGGCCTCTGCATCAATCGATGCATACAACCATCT
TTATTAATTATTTCACGAAGGTCTAACAAAAACATACATCAAGCCACCCGAAGCTACCAC
TCACACATACAACCTTTATAATGTGGAGTGATCTCACTCCCCATATCTAAAATCGATGTC
GTTCCTAATCCATCCATATAACGTATCGGACCACGGTGAGCAACCTAAAGGTATACCACA
TGCACATGTTTTAGAAATCGCCATCATCATCGAGACGTTGTCCCATCTTTAGGCGAAAGA
TCCGCATCATCCTTGCCAGTCCGTCCATCTGTTGATGCCACCACGACGCCTAACGGCTCC
ACCGCCCTGCACTCGTCCATTTCGACGCGAAGACTCTAGAAGATCTATTGTGCGTAGCGC
CTGCCGAACACGCATGACACAGCATAGCACCTGTCAGCCAGGCATGACTTGACATCTCCA
CCGAAGCTCCATTCAAGATGAAGTTGCTCCACCTCCTGCCTCTATCTTTCAGCGCTGCTC
TACAAACGATGCTCTCAAGAGAGAATCGACACCATAGAGTCGCCATCGCTCGATCTGGCA
CTATCATCCGATCTGGAATACCAGATCCTAGGGTTTCCTCCGGAGCAGCACGAGCAGGTC
AAAAGTAGTTACACGACGATGCCTTCATCAAGGTAACGACGCAGAACACCGTCATCGACT
ATCGTCGGCTCGGTTTTCATCGACAACTATATCTCCCCAACTCACACCGGGACTAGATGA
TCGATCTCGAGATCCGACCATCCAGCGTGAGGACAACCACCTCCGAATGAGGAGATGACC
ACCACCACTGGCTGCACCAGCCAGAATAGATTTGACCAGAGGTGTCGTCGAGCCGTCCAC
CAGACCCTCCATGCCGCCGCCGATCCGAAACCAGATGGCCCGCCGCCGCTGCCGACCGCA
TCGCGTCGCTGCCCGAACCAGGCCAACCACCGCACGCCGCCGCCCATGACTGGGATGCCC
GACACTCCTGCAGCCGCCATCGCCCGAGGTAGGGCCGACCACCGCCGTCGTCGCCATAGC
CATCCACGTCACTCCGCCAGATTGGTCGCGCCTCCACGTGTGTAGGGGCCCCGCACCACC
CCTGAGACGGAGGAGAGATGGAGTCCCCCGCAATCGCCATTGGCCCCCGGGCGTAGCCCG
ACAACTTCCTCCAACATCGGCAAAGGGATGGGATGAGGGAGTGCGCGCCCCCGGCAGCTA
CGGTTTGGGCGGCGCCCGAGTCGCCCTAGCAGGGATGATGCGGGGGCAGTGGATCTCTGA
TCAGGAAGAAAGGAAAATTTGCTTAACTATCACTTGTACATATCACTTTAGTCTTTCTCC
TTCGTTTATATTGAACCAATAAGAAAGCCCCGACAATGGGCAAAGGACCCTTGGATAGTA
TAAATAGGTGGCGACCAAGCGGAGAGGACAACTTTTACCACCCACGAAGACATCTTGTAG
CTCTACACACAGCAATATCAAAACACAAGCAAAAATAGGATATTACACCACCACGATGGT
CTGGACGTGGATATCTCCGGTGTGTTCTTGCATTCTCCCTTTGTGTGTGATGACGTTCAG
TCCCTAGCCAAACTCTCAAAAGGTTCTTAGACACCGACATAGCCCTTCTCCTATAACAAG
TAGAAGGGACTCATGCCTCCTCCTCTTTGCTCTACTTCTCTCAGGCATATGGCCTATGGT
CATCCTGATGCATAGATGCTCACTCCTATCATCAAGACCACATCGACGACGAGAATTCAT
TCAGACAAATAAGAGCTCAAATTTCACCCTTCAATCTATACAAACCATCATAAGCATACA
TCATGCTTGGTGAGAGATTTTTCAATTAGCACATCCATCTACTCATCTACCTCCTAAACA
TTGTCCCATCATCATATTATTGTTGGCGGGGGCGCGCAACATGCCATCCCCGGACATGAA
CAAAGATATCAGCCGATCTAAGGTATCATTGTCGTGCTCTGTAATACTCTATGGAGAATG
CTCACGGTGGATAAATATTATGTGCTGGCAAATTATACAATCTTGATTCATGGACTGTTT
GCTCTGTAGCGAAGTATGTACCCATTGAATCAGGCAAATAGTCTTCTTTTTTTAATGCCG
CCAAGGGCTAGTTCTGGGTGGCCTCTTTTCTCACGATGAATTTAATTGCACAGCCAATTC
AAACCACGGAGTAGTATAACCTAGCCAGAAAGAAATTTTGTTAAACGCCGAACATGCATA
GTCGTTTGATTATAGGAGGCAAGAGTTGACAACCCTGTGGTTGAATTCTTAAGGAAGCCG
TGCATACAGGCGCAGGATTCAAGTTGGAAGGTAAAATCATGCACGTGGCCGGCGATGTAT
AAAACAATATAACCAAAGAAAGGGTAGGTAAAAGATCCAGCGACAAAGGACAAACGAAAA
TGGTCCTTGTACAAGCATCATAACTACCCGAAGGTTAAGAGAGAAAGAGCGCAGTAGCTA
GGACCCTTCACTACTGCTCATCCTCAGGCTTGCTTGAATCCCTCGTTTCATCGCCAGCGT
CATCCTGCTGACATAAATTGCTGAGCACTATTCAAGAAAAATGTCTAGTGCTATGTACAC
ATTTTTCCTTGTTACTGGTCAGTACACTCTACCTGCATATCAGAGGTCCACAAGGTGAGA
TTGTCACGGAGAAGTTGCATGATCAGGGTGCTGTCCTTGTAGGAATCTTCCCCGAGGGAA
TCCAGCTCAGCAATGGCTTCATCGAAAGCCTATAAACATAAGGGAGTGTGATCACATACA
AAAAAGGAAACATAGGGGAGTTGATTTCCAAAAATATTTATGTTCTGATAAGTATTGTTT
GAATTCTCTATGTGCATATATTGCGTGGGTGGCTGATTTTGTTCTGTTCATCCTGTCCTG
GATCACTAAATCATCAACAAACATGTCTACTCGGTATGTACATGACACAAATATGATTAC
CCTTGTTGGCCGAATTTTTGTTTGTATGATTTGTTTTTCAAATACCCATGCTTAAAAAGA
ACACTACTTATGTACCGAAGCACTATTTTCATGCTCCCTGTCCATTGTGCTTCTAAGTAC
ATTGTGATCACTAGAGGATACCCCAATCAGAGATTTGGTTTCTCTGATATTGTAAACACC
ACACCGATCATAGATTCACCATTAAGATTTAAACTATGCTACTCCCTCCGATCCATATTG
ATTGACGCAGCTTTAGTACAACTTTGTACTAAAATGTACTAAAGCTACGTCAATTAATAT
GAATCAGAGGGAGTATGTAGAAACAAAAGGCAAAAGAATAAAATTGAACATGTCATGAAT
GAGATGTGGTGGTATTAAAAATCAACGATGCATGCATGGTAGAGACTCTTATGTACAAAT
CAAACGGATGTTAGTTGACCAACCTAGCAAATCGAATGGCTAAAACAATTTTGATGGTGT
GGAAGCATGCGTGTGCTCAAAAATAGCAATTAATGACTCGTAGTGGAGTTTGTCTATATA
AGATATATGGATAGAGATATGCGTCTTCAGTCTATACAGTATGCATCAATTGGTGAATAG
CAACCAGTTGAATAGCACCAAATTAGTGCTTCTTGTTAATCATGCTTCCTTGATTTCTAC
TATATGCTTGGAATGTAGACATGTAGCATCGCAACACAACGATGTTTCGTGAACATTAAA
TTTGTGCAATAAAATCTTGCCTACCAAGCGTGTAGATTTCTCAAATCAAATTCCATACTT
TTACTGTGTGATAGCATCAAATCATTTGTTTGTGTTGGCCCCTTTTGATCTCTCACATAC
ACCTCAATGTTGACGAGGGGGCCACTAGAGGATCAAGGTTGGATGTGTCTACTTCAAAGA
CGACAAGTCAAGTTCATACAAAGATCCACATGCGGGCTATCCAGGTATACAACCTCAAGG
TTGGCAAAGTGAAGATCAAAGTGCTCAGGCAAGATCAATGTGAAGATTGCCGCCATGGAT
AATGTGGATAATGACTTCCAGCACATGATGGATCACATTTGAATTAGTGAAATTTAACGC
ATGGAACTAACTTGACTTTGCCTTGAAGCATACTCTCCTTTCGACTGGAAATATTGTTTT
CCTTTAGTGTAAGCAATATAATATTTGGTTGGAAGCAATTCTCTAGTTAATGAAAACAAG
ACTAAGATGCTTCTCAAACATGCGGAATAATTTTCTTTTTAATGGAAGGAAGTTGAAATC
AATTCTCATATGGAAGCAAGATAGTGATGCTACTCAAACAAAATTTCACGTTACAAAGGA
AATAAAAATCCAAATAAATCAAAGCAGATTTTGTGTACCAGAAAAGTGAATTCTACTATT
AAAAAAGCATAAGTTAATTTGTTCAAAAGGAAGCTAACTGATTCACAGCATTACAAGCTA
GGGTGGACGAGCGTATTAGTTGTGTCTGCCTTTTAAGAGGACGTGACGCCATCCGTATCT
CATGAAATAAATGCACTAGTAGCTTATACACGAGCTTAGCCTTCGTTATGCCAAGTCATG
TATGCTCATTCATTTGGTTGCACAAGCCACATTATCTTTGCATGTGTGTTCCTATTGTCC
TTCCTTTACATTTGAGATCAATTTGCATTACTTTGAGTTCATTTGGATCTTGCCCAATCA
CTGATTTCGTCTGCTAACCTTATCGAGGCCTTGTAGGGAGCATGTATGTGTGCGTTGGGA
ACACGTATCAACGCAATAGTTGGTACACATTGGACGATCTCCGATCCTTCTCATCGAAGG
AGTAGAGAAGGTAGCTTGATATTATTCATTCCTTTAGCCACTTACTATTTGACCTAGTGC
CATGATGTATAGGGAGAGTGAAGCAAACATGGATGGACATGTGGCGAAGCCTCAAAAACT
TCATCACCACCACTCTAGGAGAGTACACACAAGCAATAAGGATGATGGTGCCATGGCGAC
TCCGCCAACAAGCACAAGTACCTCTGCATCAAGAAGGTGCAAAGACAAGAGCCACCACCG
AACTCATATACAAGGGAACATCGACAAGCCACTCACGATTATGGACAAGAGAAGCTTCCC
AAGCTCAAGTCCACCACTTCCACAAGCTACTCCGACTTCGACAATGACATTGAGATACCA
TTCTATGCGGCTCATGACCCCGAAGAGTACCTCGAGTGGGAGCGAAGAATGGACAGCTAC
ACGTCAATCAAGTGATGCGCCACAAGACATCTCCACGGCTATGTGTCGACATGGTGGCTT
CCCATACCTTTGAAGAGCTTCCAAATGAGATCGTCCAAGATGAAGAAGCGTGTGCGGAGA
GAGTTTGTGCCTTTCACATACTCGAAATATCGTCGCCAATTAGGGAACACCACAAAAGGA
CCCAAGCCCCTCAACGAGTTCTTCTTGGCGACGAAGTCAGGCTTGCGATGAGGCGATGTG
GATGACCCCATTTGGATGAAGTACAACTTCACTACAGGATTGAAGTATAACATCGCCAAG
AATACCTTCCTCAACAACTACAAGTCTCTCAACAACCTCCACAATGGTGCTCTCAAGGCT
GAAGGAGAAATCAAGAAGAACAAGGCTGAAGGAGAAATCAAGAACCTCCAACAACCTCCA
CAATGGTGCAATCAAAAAGAACAAGGGTACTTGACCCCATGCGCACTTCCAAGACGGTGA
GCGTGAGGATAGTTCCACCAAGATGTCCAAGCCTGACGAGACGATACTCCGAGGTAACGC
TCCAAAGTTCGACTTCACTGCCATCCCTCTTTGTCATGGCATTGATGATGCCGAGTCAAG
CATGATTCTTTTTTAAGACGACACGACGACGGAGTCATTCAAGGACCATGCTTTGGAGGC
AAGCGACTTGGTGGTGAGTAAGGAACAAGCTTCCACCTCTGGGGGCGATAGTGAGATGGT
CGAGCATGGGCTATATTGACATTGGTCATGCAAGCAAGTGATAATGTGCCACACTCCTTC
ATCTATGGTGACAATAATGAGATGGTTGAGCATGGGATTTCCCTTCAACCATGGCGGTGT
ATGGTGATGAATGAGAGACATGTGCGCCCCTATTGAGTGAGAGATTTCACCACTAGCCCC
ACATATGATAGGAATGCCCCGGTTCTTATGTGAGGAGAGTTACCACCACTTGATTGACTC
CACTACATGTGAGTTTGAGAGCATCCACCTTGTGGGAATGAACCACCACAAGAGTTGAGA
GGTAATTGATAGGTCATGGGAGGCCATTTGCACTTCTAACTTAACATCTTCCTCTATTGT
GTGTTCTCATGTGGTGCTAGGTCTCATGGATGATGATGATCCGCTGATCCTTGGTAACTT
CGTCCCTCTTTTGGACAAGACAATGGTCACGGTGGAAGAAGATGCACCCCCACATAGTTC
CATCAAGATGATGACGTTGGCCACAAGTTGGTCCTTTCCATCACACCTTCAGATGAGCGG
GAGAACAAAGGTAATTATATAGGTGATGGTGATGTGCCTGGACATGGATTGCTTGCATGA
TATTGATGCTCCTATTGCTATCTCGCATGCTATTTTGCCCTCTACATGCTTTTATTTGCC
AACCATCTATGATGATTGTGATGTAAGTGATGTCGAGTAGTTGATTGTCGATGATAGGCT
CATTTATTTGTCCGGTCAGGGGCACTTCAGAAATCTCCGCACATGACACAAGGGTGTTTT
ACCCAGACAGGCCACGGAGATGGTGTAATAACCTACATCATGTTCTTAGTGTTTCTTCCT
CTGTTCATACATCACTCATTACAAGATAAACTACCCTTTCCTTTGTTTCTCACTCACTAC
AAGATGAACTGCTCATTTTCCTTTTTTTTCTCTATGTGGTGGGAAGCTAGCCTATTAACT
CTCGCCATCCTCTCGGGCCCGGTCCTCCCCTTATATAGTGACGAGGGAGCACCGCTACAT
CCCATCATCCCTCTTGCCATAGATGATCCTAGCCAAGCTTACCTGCACGACCCACACGGG
TATGTTAGAAGATAGGGCCGCCCCCAAATGGGTTTTGACAATTCTCTCCCTGTTTGCCAA
TTGTAGCCCCCCCCCCCCCCCCACCCACACCAGCGGGGGGGCGCAAACGCAGCCGCTACG