morexGenes - Barley RNA-seq Database

Contig contig_162749

Source Contig contig_162749

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_162749 (6206 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_162749

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23674	1	306 bp	MLOC_23674.1	Available	Available	None
MLOC_23676	3	3681 bp	MLOC_23676.3	Available	Available	LOC_Os09g36920.1, FRAME:-3, EVALUE:1e-35, 13109.m03649 protein la domain containing protein, putative, expressed
MLOC_23675	1	184 bp	None	Available	Available	None

CDS Structure of MLOC_23674

CDS Structure of MLOC_23676

CDS Structure of MLOC_23675

Contig Sequence (6206 bp)

>contig_162749 6206 assembly3_WGSMorex_rbca.fasta
AAGAAGGGAAAGTTCTACACTTGGGGCATTACAACCCACCTGATCAAAAATCGACGTGGT
GAAAGACCCCCTAGCCAGGACACCATGAGTAGCCTCTAAACCGATCTTCAAGTCTAGATG
TACTTTGATTTTTTTTTCAAGCTGATATTCGCTTCATGCGCAGGTCTTGAAAACTAGTTC
AATGAATTTGTCTTTCGTACCCTAGTCTTTGATCCTCGGATTATATCCAAAGATTTTCAG
GATCATTATGGTTTTCTACAAGTGTATGTGCGTTTGTACGCCGAACTCCTTGTTGGAAAT
ATTTTCGCGCAGTCAGTCCTTAGGGACGAAGTTTACCCGCACTCTGGTCATGGCGATGAT
CCGGTCTAGTTCTGACAACATGGGCCTATCTTGTCCACAGGCCCGTCTGACCACATGAAG
TTCCTGACCCAATGATCAATTTAAAGTGTGAACATGGATCGACGACCCATCATTGTTGTC
TCCCACACAAAAATGGATTGTGCGCCTCTATGTGCACGATGGGCAACTGCCATCCCCTCG
ACCACTCCTACGGTAGAGCAAGCATCGGTGCAACGATTGGATGCTCTGGTTACCATAAGT
GCATGATTTCATTCAAGATGTTTTCACGTTGTAGACTTGTTGGTCGAGTATCTTCGGATG
TTCGAAAGCACATGTCTCAAAATCATGGTCAGGATTGCTACTTTGATGGTCAAGGTGTTT
GGACCGAATTACTTGAAAGACCAAACTCCCAAATACAAGTGTAAATAATAAAAACCATGC
CTCAAATGCAAGAGAGTGACCAGGTATGCTCGGACCCCTAAATTGCATGCAACGTAAGTG
GAATAACTGCTCATATGCTCAACAAGGGGAATATTATCCACCATCATTGTTGAACATGCA
ACATCACAATACTTAAAACATTCAAAACGTTCATTGCAAATTCAAAAAATACTAACAAAG
TTTAATTTTATGCTAGTGTAAATAATAAAATGTTGATACATTAAAAAATGATATACAATG
TAGAAAGATGTTCGTGTAATTCAAAAAAGTGTTCAAAAATGTCTGCTACATTTTAAAAAG
TATTCGTGCGCTGTGAAAATATCTTTGTGTCATTTAGAAACATACAATGTAAAAGTTATT
TGCATAGTTTAAAAGATGTTTTATTTAAAAAGTGTTAAATATGTTAACTATGTATAAACT
GATGATTCATTTAAAAAGTTAATGGTTTATTTAAAAAATGTTAAATATGTATAAACAAAA
ATGTGCAACATGCAAAAAAATAAATATGTGCTAAAATAAACCGGAGTATATAAAAGTGAA
GGATACTGGTGAAACAAAGAAATAAACAATAAAAGCCAAAGAAAAAAAACTGCAAACAGT
AAAATAATCATGCAGGACAAAACTGCGCCGCTTCTACAGTAATTGGGCAGCCCAGTAGCG
CATTCGCCACAGATAAGTGCGAGACAGAGGTCACAAGTTGTGGATAATTTGCTTTTTAAC
ATAAAAAACACTGCAGTTTCCTGTATTCGGGTTCTTTTTCTATGATTTTTTGGTTGGCTT
TCTTATGTTTTTTTATCCTTTTCTCTTTCTCTGTCTTTGTTTCCTTTTTAAAAAAATTGT
GAATTTTTCTTAAATTCAATAACTTTTCAAGTTCGTAAACTTTTCGAACCTCATGATTTT
TTTCCAAATATATGATTCCTTTTCAAGTTAGATGAATTTTTTTCAAAGTCTCTGAACTTT
TTTTTTATTTTTGAAATTTTTACAAAACTGATGAACTTTTCATAACTTGGTGTTTTAAAA
AAAGATCGATGAACTTTTTCCAGAATTGAAGAATCGTTTGAAATTCTATGAAGTTTTTCA
AAATAAATGATTTTGTTTTAAAATGGGGTTCTATTAAATCATCCAACTATTTTCAATTTT
TTGTGATCTTCTTTCCAAATTTGATGAACCTTTATTAAAATTCGTGACCTTTTTGAATTC
ATGAATTTTTACATTTTTTTTAGAAAAAACATGTTTTTTGTTTGAAAATATATCAACGTA
AAACGAGCCTTGACCCGCCAGCCGTAAAACGAGCGAACCAGGAGCACCGAGCAAACGAAG
GAAGCGCGCGAGCGCCCAGCTCGATTTATTGGGCCGGCCGGAGTGAGGCTGCTGCGTGAG
CGCCAGTTCCTCGATCCAGCGCCTGAAGCGCGGGATCCCGTGTTATATCACTCTATTCAT
ACCGTTGATCGGAGATTGGATCAACTTGATCCCCACACAAATCAACAACAAACGGCATTC
ACATTTCATGTTTCCGTATGCACGCTGGAGATGAAAATGAATCGAAAGAACATAATACAT
AATCCTTCTCAACACTACAGAACAAGGACAATCTCCCGGATGCTTGCATCAAAACCCTAA
CTGTAAGCCAAAGAATACAAAAGAAAAGACTTGGTGTATGCACCAAAATTCAATAGGGAA
ATCCTGTGAGATAAACCCCATATATCATACACAACAATCAACAGGACGTCATCATCCATG
GCAACAAGGGAACGATAATTTCTTTTTCAGACAAAACTATACAGCCAAAAGAAAAAAGAA
TTTGCACTTCTGGGATTTATTTCCTATTTATTGCTGTGTTTGCCCCCTTACTGTTTTTTC
TTTAATGCGCTTTTCAAGTGCAGCCATCATGTCCGACCTAGACAAACAAAATCGTCCGAC
TCTGAAAATGTAACCCCGCTGTACATACATGGTCCATTTATCACGGGATACTGCCCATGA
TCAAATAGACAATCACTTCTACGCTTCTCCCGCAATAACAAGCAGCCTTGTTTCGTCATA
TGATTCTTCACTGTACCTGATCAAGATACTGTGTTAGTACCTAAAGTACAGTGCATTCAG
GCAGCCAAAAGCTCGACGAAGTGAGGCTAATGTGTGGAGGAATCGGAAATTTGGAACCAA
CCTAATTTGAAGGTGGTGGGCCTCTGTGGAGTAACCATGCTTCCCAATTATTGCGTCTTC
GGACATTATTTCCCTGCGGGCACACCAGTGGTAAACCATGCAGGCACAAGACATGTCAGA
TGTGCCAGATCACCATCATCAGAACAGTCACTAGAATGGACAGATATAATGAAAGCCAGT
GTCCCAGGTGTGTATAGCGACAAACCTGCACTTCTAACAACTCAGAGCCGCGGATAGAAT
CTAGTATATAGTTGGTGTCTATTCCCAACATTGTGAACCTGGTCAACTGCAAAAAAACAA
ACCCAGATCATTACATATACTAATATACATAATCTAAACTGGCGGTGTCAAGGTAAAATG
AGGTCACCAATATAAGACTTCAATGACAGTTAATGATACGCGAAGGTAATCCTCCATTGT
GAAGTGTTCGTTCTAAGAATAATGGAGGATTACATTTACATACTAGTGCCATAGGAATGG
CTACATGCTAAGCGAAAAATATGGTAACCTGGGAGGCTCAAGTGTTCATTTCTCAGAATA
ATAGAGGATTAAATACTAGTGCCACAAAAATTACCAGCTGTTTAGATGCAATATGGCAAC
CTGGGCGGACCTAAGTGCTAAATGCCTGAATATACTCTTAAGTAATCCCATAATATCCTA
ACATAAATGCATCTTACAAATGAAAGAACAGAGTTTTCTCAAAGAAATGAAAGAGAAAAT
TAAAGAGTTGTGAAATACTAAGAGAGCAATGCAAAGTTACTCCAGGGGTACAGCCATATA
TTATCAGGGATTGCCTCTCAACAGCAAAAACCTTCCTCCAAAGCACCAGCTTCAGTTCCT
TACTCACATCACTTTCTTGGTTTATATCTCAAGAATAATTTTGGCAAGTTGTATTTTAGT
GAACTCTTAACCCAAGAGGTCAACATTGCAGTACTAATGGATTGCAATATTTGAATTATG
ATACCGATTTAGTTATATCACCTGTTAACTATAAAGAAATTGCTAGTCAAATGCAAATGT
AGCTAGCAATAATATTTTGCAAAATGACTCTAAATCTAGAATTGGAAAAAAGGTAACCAG
CAAGAAGGTTAGAAAAGATACAAAGTTGCCATGCAAGAAATACTAATTAAACTCACATTT
GTAGAGTCTGCAATTTTTCACAACTACTGTTGCAATGTTACCATACTAGAACCAAACAAT
ATTCCATCGAGAAGAGAACAACTCAGCTGGAGTAATGTAGCAAATCTACAACACTCTACC
GGAGAAGCACTACGAAGCAAGTTAGTATACTTTCAAATAAATTTCCCAAAATATGAAAAT
GTTAAACAAATAATATTTGTGTGATGCACACGAGATTAAGAACTGTAATTTAGTACTTAC
AAGTATCTTCTAGACTTCTATTGTCTTGCCCGACAAAATCAAGTGATCCTCATTTTATAA
TTGTCACATTTCTAGTGACACAAAGAACCATATGTAGTAAACATGTCTTGAATTATTCAA
AAATGAACTCCACCCCCCTCTCCCCTCGCCACGCACAAAAAGAGCACAAAAATTACATAG
ACAAGTAAATGTAGATACAATCTTGCCGTTTACGAAACAAACTCACGAACTCATAGTCAT
TCGTAGAATAGTGTACCAAGTAAATTTCCAAGTTCCGATCTTGCAACATAAGTTATCTAA
TATGTGAAAGTACAATCAGCAGAGGTATCACACTAGCGTTAAACCTGTCAGGAGAGATTT
AGAACAACAGAAAGGCTACATCCTGAACTGACATGAAAAAAGGAACCAAATGAGAATTAA
AAGACAGACCATAGGGAATCCAGCGATTAAGTCAATAGGTACCCATCCTTGATCATCCAT
ACGTTCTCTCAAGTATGTGTCGTGGCAAAGATTATTAGTGCTAACAAAAAAAAAGCAAAA
CAAACAATTAGCATAAAAACAACAATAACTTCTCAAGAATTATGAAGTAGATTCACTACC
TAAAATAGTGCTCAATCTGCAGCTGGATATCATTTTGGAGTTTTATTTGATCTTGCTGAA
GCGCCAAAGGCTGCATTGGCGGTCGGATAAGATGCATGTTCTGAAACTGCTGCTCAACTT
GTGTGACATAGTAAGGATAGGAGACCTGTAAATCAGCTGCATATTTACACACTAACCACG
TTACAAAAGAGATAAGAATTGATAGTAAAGGTCTAAAGGATGACACAGGATGAATTAACT
TACAGGGGTACGCAATGGGTTGCACATATGACACGAAAGGTGGCATCATAAAATGGGCAG
CAGCAGGTGATTGCGGCGGCGGCCGTTGAAATGGTCCAGGCTGGTAATAGCCCTGCTGCT
GCGGCATTGGCAATGCTCGGGAATAGTTCCTTGGCGAGAAATTACTCCCTCTTTCGTGGT
CACGACGATTCCGACCGCCACGACCACCAAAGCCGTTGTTGTTACCACTACCATGTCGGG
CATTATTGTTCCAGTGGCCGCTGCCACTACCGCCGTTATATCTGTATCCCCCATCACCAC
TCCCGGTGGCATTGTTATAGCTACCACCACCACCACCACCACCACCACGACCGTTGCCAT
TCCAATTGTTACCGCCAAACACCCTCCTATTATGGTCAACACCACTGCCACCAATGGCGC
CGCTATGAACACCAGAGTTCAAGTTGCTGCCACCACTAAGACCCCCATCGTTCCAGTTAC
CATCACCACCACTACTGCTGTTTCCATCACTGCTATAATTACCGGTGCTCTGGCTATGAG
TACTCACATTGCCACCGCCGCCCCCTCCACTGTTACCACCGTTACCGCCACCATGCCGAA
CTAAAATTGGCTGGCTAGTGCTGCCGTTCCGCGGCGACGAGGCCGTGGTGGTGGTGGCAC
TGGGAGTATGAGAGGTTGAGGCAGGGCCTGGGCTTGTGCTTGGGGCAGTAGAGATCGGAG
TAGAAACCCGCTGTGGCTGCTGCGGCGGCGGCACAATCGAATCCTCCTGATTACATCCAC
AGATTCATTCATCAGACACCAAAAAATTCATCAGGCAGTGCTGGGAAGAAAAAAACTGAA
CACGAGAAGCGGTTTCCCAGATGCATCAGCACAGTACACGTGTGAAACTTGATGGGGGGA
TTCAGTTACCGGGGCGGAGGGGGCGGAGCCATCGGAGAGGGAGTCCGAGGAGGCGGACTT
GGGCCAGGCCCGCGCAGCCGAGTCCGCGAGCGCCGGCCAGGACTCGTCGCCGCCCATGAT
GCCGCCGGCGGCGGGGGGCGGCGGCG