morexGenes - Barley RNA-seq Database

Contig contig_1625721

Source Contig contig_1625721

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1625721 (1380 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1625721

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23577	1	279 bp	None	Available	Available	None
MLOC_23576	2	1286 bp	MLOC_23576.1	Available	Available	LOC_Os01g72880.1, FRAME:+3, EVALUE:7e-14, 13101.m07948 protein DNA mismatch repair protein Mlh1, putative, expressed

CDS Structure of MLOC_23577

CDS Structure of MLOC_23576

Contig Sequence (1380 bp)

>contig_1625721 1380 assembly3_WGSMorex_rbca.fasta
AGCGGCCCTCGTCGGCGGTGAAGGAGCTCGTCGAGAACAACATCGACGCCGACTCCTCCA
CCATCTCCGTCACCGTCAAGGACGGCGGCCTGAAGCTCATCCAGGTCTCCGGCGGCGGCC
ACGGCATCCGAGTACGCTCGCCCGCCCGCTTCCTAAATAAACCCTAAACCCGGAACCCTT
AGTGCTGCCGCGGGAGCCTACCAGCGCAAAAATCCTTCAGATGCGAGTTGTTAGTCATGA
TTTCTGTTGATTGCGAGCTGCTAATCCTTAGTGCGTACATGATCCGTTGAGTTAAAGACC
AAACACACAGGACCTGGAGGAGTTGATCTACGAGACCAAAAGGTCCAGACCTTGTGTGTT
TGGTCTCCGTTCCCTTGAGTCAATCACCATGATTTTACATCAAGATGATGTTTCTTCTTT
AACAGGGGATGATGAACAACATGGTAACAAGGAGGAACTTTAACCAGCCTGTTATAGACT
AAGCACTGAAAGCATGTTTGCATTTACATTATCTCGGTCATTCTGTTACAGGGCAGTGCA
TTCGTTATTTGTATGATGCTTATTGTTTATTAAAACATCTGTTCCAAGGAATAGATTCTG
ATCTTTTTAGACTATGCTTTTTTTAATGAAAAGTGGAATTACTTGTAATGATAACCTTTA
TAAGGTGGACTTTTATGGACGTTGGAAGTTTTATAATAATGGTTGTTGTACATATGTTAT
CATCATACGAGAGATAATATATTCTTTTGATCCTCACAAACTGTTGTTGCAGATGGAGCT
CATTTTGGCTGAGTTTTCTACCGAGTTGCCACATTTGAGGGCATGCAATTGAAGAATACA
CCACTTTTTTCCAACGATACTAGAGTAATCATATCTAATGAAAGAGAGATGTATTTTATT
TTTGTTGGAGATATTCTGCATCTTAATTTTATGGACAGTAACATTTTAGACAATAATTTG
ATGTCCTAACCATCAAGATCAACTTCGGCATGTATGGTCTCTAGAAGTTACTATTGACCA
TCATTGGTGCATCTTGTAAGGTATAGTCGGTACTATGAGTAACTTACTAGACATGCATTG
ACTGTAGAAGTTGATATACAACTCTTGTGAATTCTAACCATGTTATTCATTTAGGATATA
CACCTAGAAGTGTGTGGGCGTGATTTACAACTCACTAACAGAGCTGCTCAGGCTCGCGAC
CGAGATGAACGTCCTCGGCGATGGTGGTGCCGCGTGTGAGATCCTCCTCCCTAACAAGGC
CGTTGCTGCATCATCTACTCTCTGCCATTGGATCCCCTCCTCTCCGACAAGGCCACCATC
GGATCCCCTCTTCTCCGACAAGGCCATGGTGAGCACCCCTCCGGCCCAGTCCGCCTCCCC