morexGenes - Barley RNA-seq Database

Contig contig_162064

Source Contig contig_162064

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_162064 (2520 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_162064

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23312	1	982 bp	MLOC_23312.1	Available	Available	LOC_Os02g53860.1, FRAME:-1, EVALUE:7e-91, 13102.m06162 protein OsSub22 - Putative Subtilisin homologue, expressed

CDS Structure of MLOC_23312

Contig Sequence (2520 bp)

>contig_162064 2520 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGAGGTGCATAGCCCCCTTAGCTATATACATAGCTCCGCCATTG
CAGAACGTCCCATGAACCTGTGCATAAACTTTGCAAATACGCTCATTTACATGCTAATTG
GGCCGGCCAATCCTACCGCTCGCCTACTACGAAACAGAACTATAGCTCCCGGGTTAGCTA
TCACCTTCTTGTACTTTTGTTTGCGGTTTTTTGTCCTTTTTCCTTATAGTAATTGTACTT
CTTTTGCTAGCAGCAAACAATTTAAGAAAGAAGATGGCTAGAAGGGTCTCTAGTGTAATT
TTATCTTTTACTGGTTGTGTTGTGTCAAATTTTTCTTCTTTTATACACGCACTACATTAT
ATACTTCGTTTGTGATGCTCTCTTGGGTGTCTTTCTAAATCAAACTGCGAGAATTGTACA
TTTTTGGTGAAGTCTAGATGGATGAAGTCATCACATGATATTAATCATGTTCAAGACAGA
CAAGAACACCCCTAAAAAACAAGACTACAAACAGACCAAATGACATTATAACTGTATTCT
ATATCGATGTCACTTCTGCTCCACATCAACAAAGTCAAAGAGTCATTATAACTGTATTCG
GAAGTCACGGGACATGGGAAGGAGATGCCAACGATGACCCAAAGCACAAACCATCGACCC
AAAGAAGAACGCTCGAACAAGGAGACCTAATCCCATGTATACACCGACAACACCGTTCGA
GGATCCTATGGACGAGACCATCAACAACGAGAACTGAGGCGGCGCCATTGAGGTTATGAC
TATCTGCCTCAACCTGATGGACTGGATATAGGGAAACCAATCCCCACGCGTCCAATGGTT
ACACTGGAACCAACACCACTATTGACGTGTGCTTCTTCATAGTGCTCCCATCGCCCCTGT
CTCCGAGTCGGAAAATATTTATTGCATTGCGCGCCCACCTTCACCGTCTGGATGGAAGTT
CTCGTTGTTGGGCTAATGAACTAAACCAAGTCTCCTCACGAGCATGAAGATCCATGGTCT
TGATCGCCTCTTGCCGCTATAAACGCTCGCCAAAGGCGAGGGGCACGGATTATCTGGCGA
GGAATTGAGGCTGTGTGGAGGATAGGATTTTTTTTCCCAGCGAAAAGACCCTTTTTATGA
GACAACATTTAATAGTGTGGTAGATGTATTGGCTTGACAAGTGCGGAGGCTCATCTGTAT
CCGTTTAGCAAAAAAAATCAATAAAAATACTAAAGTTTTTTTTTTAAATTCCACATTTTT
AGGGTGATAGATAATTTGGTGCCTGAGGTCCACTCTAATTTTTGTATTGTTTGAACATCT
GAGCAACTTTGGGCAACAAAGACAAAATGGGTCAAAACGATGCATGTACAATAAACCTTT
TTAAAGACCCCGAATTTATTTATTTTACCGAGAGATGTTTAAATTATACGGAATTTGGAG
TGAACCACACATTTAAAATTATCTATCACCTATTTATTTTAGAATTATTTGATTTTTTTT
ATTATTTATTTTGATTTTTTTACTTAGCAAGGGTGTAGATAAGTCTGGGCTTAGAAATGG
ATTTTCGTGTACATCAGTCTTTCTTTGAACGAAATCAAATAAAGCAAGGCCTTTTATCCA
ACCAAGGGAACTGAAATTTACAACAAATGAGGTAAACTCTCGCACGTACTATTAGGTACT
ACTTCGCAAAAAAAATAAAAAAAATATACTACCAGGACCCACCCACACCGATCACATTCA
CATGTCCGCAACCTTGCTCTCTGGCCAGGTGATGGCGATGGGGCTCGTCACCGTGTGCTT
GCGGTCGCTCCACTCGATCGACCCAAACGTGTGATTCCCCTTGACGCTCCCAAAGATTCG
CTGTGCAAAGGTGACCACGTACTCTCGCGTCTTCTGCGTCGCGGTGAACCTCAGCGTCCG
GGGGCTCACGGTGACGAGCACGCCGTCCGGGGCAGTGACCTTGGCCCTGTACGTAGCCCT
GGCGTCGCCGCCGACGTTGCGCACAACGCGGCGCTGCTGGACGACCGCCAGTTTGTTTGA
GGTGAACACCACCGAGAAGGCCGGGTAGTTGTGGTCGCCCACGGCGGAGCCCGCACGCGT
CGAGCAGTTGGCGGAGGAGCCGAACACGGCGACCTGCTCGGCCGTGTAGCCCAGCGCGCA
CAGGAAGGTGATGTAGTCCTCCGTGCCGGCGTCGTACACGAGCCCCGGGTCGGCGGCGCT
GTTGGGGTCGATGTGTCCGGCCCCGCGCGCGAACGGCGTGGACGCGTCGCCGGTGGACAT
GTCACCGATGACGCTGCCGGCGTTGTCCACGTTGTACGCGGTTGTCATCAGGGCGGACTT
GATCATGGCGGGGCTCCACTCCGGCCTCCTCTGTCGGAGCAGCGCGGCGATGCCGCTCAC
GTGCGGGCACGACATGGACGTGCCCGATATGATGTTGTACTGCACTCGCCTCGTGTCGCT
GGGGAGCTCCGTGGGTGAGTTGGCGCCTGTCCAAGCGGCGAGGATGTCCACGCCGGGCGC