morexGenes - Barley RNA-seq Database

Contig contig_161962

Source Contig contig_161962

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_161962 (1492 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_161962

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23239	1	1489 bp	MLOC_23239.1	Available	Available	LOC_Os08g44180.1, FRAME:+3, EVALUE:5e-28, 13108.m04790 protein expressed protein

CDS Structure of MLOC_23239

Contig Sequence (1492 bp)

>contig_161962 1492 assembly3_WGSMorex_rbca.fasta
CAACCCTAAACAAGATTATCTAACAAACCTTATGCCTGATACAGCTTTCTAGCATGCAAG
TTACTCTAGTTAGTTCATACAGAGTGTTTTCAAATTTGTAAATATTTGCTGGGACCACAA
TCCCAGACTCTTTCTCAATACATCAATATAGCACAAGTTGCTTTATGATCCAACAACCTG
GAAGTATTTTACTCAGGGTCATGGCTTTCTTGAGGTCAGCCCTAAGTTATGCTGTAAAAT
CATCGATGATCTGCGATGGGAGATATCTAATGTGAAATAAATTATGCTTTCCTTAATATT
TCGGTTTACAGTACACTAGGTAGCATTCTAGTTTGCAGCCTCCATCCCAACTTATTGTCA
AACAAATTTCCATCCCAACTAGAGATAACAAATGTATGTTTACTTTGTATGCTGTCCACA
AAGTACTGTGAAATACCTCCTGAGTATCAAAATTGAACTCGTACTACTTGTGGAAGTCCC
ACCAAGTATGGTAGATTACTTACAGGCTTCATGGTGTTTGTTTTACATTCTTTCTTATAG
GCAAATCATATCAATATATTCTTTTACATGAACACTTTGAATCATGTTTTATTTTGATTA
GATCTGCTGAGTGGCCACATCTGTAGTTTCATTTAGTTACTTTTGGTCATTTCAGTGCAG
AGTAAACACAATGACATAAACTATGAATTTTGGCATTCATGTGTCTGTGCTCCTAATATC
AACCAATAGTACATGGATTGTCGCCTTCCATTTTGTTCAACTTTGCAGGACCAGTTGACT
GCTCAGATGCCCAATTCAATGTGCAGCACTTGTTCCGCAAATTAGGAAATGAAGAATTCG
TTGGTCAGCGGATAATCCTTGCAGTTTCTCAAAAGATCTCAAATGTATCAGAAAGCTTGC
TTCTCATAGATCCGTTTGATGATTCCTTCCCTGATATGAATGACAATATGTTCATTATGT
AAGCTTAAGCTGATCTTCTTTTCATTCTAGTTTATATTACAGTAGAAGAATTTTAACTTA
CCCACTTAAGGCACTCATGATTCCCTGTTCTCCAGTGTACCTATTTTAATTCACTGGTTT
ATAAGAGACATTTTGACTTCTAGTATTGAAATCTGGATGAAAAACTATACCGGCAGTCTG
AACAAGGCAGCTATTCCTACATGTGCAGTAGTTCATATATTCATTTAGTCTTGAATTATT
GGATGGAAAATAGTTTGAAGAGGCTACCATTTCCACTTTAGCAGTGTAGTGAAAAATGCT
TTGAATAGCCGATCAGTTGCCCATTAATTTGGTGCTGGCCCAAAGCGTCGCAATTAGGAT
ACACAGAGGTTAGTTAATGGGTTTGAGCTTTCATTGGCTGTCAAATCTGGTTAATTGACA
ACCTACAACCCTTTTAGTTTTTTTGTTTTGCCGGATTGCTCATTTAGTTGGTGCCTGTAA
CTTTTGACATCCTGCATGTGCATCATCTATGTTATTCTTCATTGGTCCAAAT