morexGenes - Barley RNA-seq Database

Contig contig_1616200

Source Contig contig_1616200

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1616200 (2097 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1616200

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23039	1	780 bp	MLOC_23039.1	Available	Available	LOC_Os02g41860.4, FRAME:-2, EVALUE:3e-41, 13102.m04626 protein aquaporin protein, putative, expressed

CDS Structure of MLOC_23039

Contig Sequence (2097 bp)

>contig_1616200 2097 assembly3_WGSMorex_rbca.fasta
ATGCCGCCGAACGCCCAGGCGATGCCCAGGATTCCCACGCCGCTGCAGGCCGCGTCGGCG
GCGTTGGGGCCGGCGGGGTCCGCCTGGTGCTTGTACCCTATGACGGTGGCCACGGTGATG
TAGAGGAAGAGCAGCGTGGCCACGAACTCGGCGATCACCGCGCGGTACAGGGACCACTTG
GTCAGCTCCTCGGCGTCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTGGCCGCG
TACTCCCCGCCGGGTGGCGCCGCCTCGATGTCCTTGGCCATCGTCGCCCCTTTAACCGAT
CGACAAGGTCCGGCGTGCGGTGGTGCCCAAGGTGCGAGCTAGTGCGCTGAGGCTGCTCCG
TGTGGTGGTGTGAGGCGAGGAGCACACGGACGTGGTATTTATGGCGGCGAGGCGCGAGGG
CGGCTACTGGCTCACGGCGAAAGGCCGGCGTAGGGCGCTCGCTTTGCGATTAACTAGCTT
TGTTTAATGGCTGGGGGTTTATTAGTGGAGGATAAGGGCGCCCTCCCGTTAGCGTCTTGT
TTCTAGGTTATAAACTTTGCCGCCCACGGCCCTCATCATTGCATCACGTCTCGCTGGTGG
CTGCGCCTAATACGGTGGAGCTTATACCTTTTGATTTAAATTAGTGGCTCGGTATGCACA
CATACATACACAATAACACAATCGATGGTTTGAGGTGACGGCAGATTTTGGTTTGTGCGT
CACAGCGTGAGCTTAATTGCCTGCAGCTGAGTGTGTTGTGTCTTGTGTGGAGCACTGGCA
AGCACCTGCTGAGTTCGTTTGCTACGAGTATTTGGCGCCAAATTTTGTACTATTGTTGAC
ATTTGTCTGGGTTCTCCACTAATGAACAACTGCTCAATCAGCGGTCTGGTTGCTAATCAT
GCGCAGGCACGTCACAAAGGACCACCCTCTAATCAAAGTTTCAATCCGAAACTTTGATTA
ACCCTAAAATGTAGCATGATGCGCCAGCATCGGTTGTACCTGACCTGTACGTAGCGAGCT
GCATTATTTCCTGAATCCCCAACGAGAAGGCGTAGAGGTTACTCGAGAGTCTAGAGGAAC
AGCAACCGTCCTGATAGAACCGGAACAGAGCCCGTAGCGTCACCAGAGGTTAATCTGGAG
GGCCACTTTCCCTGGCCGGCTGCTCGAGCGAGAGGGAGCCCGGTCCGGATTCTGGAAGAT
GCGCGAGGGTTCGACCGGATCGCGACCCGATATCCCCTCACGGATTTGCATGTTGGCAGA
CTGGAATCGTCTCGTCTGCATGATAGGCATGCGTGCGTGCGTGGCGTTGTCACTTTCGTG
CACGAACGTGGCTTCCGGCTCAACCCGCTTTTCAACAGCACGGAACGGAACCGAAAGCGA
AGAGGCCTCATCGTCAGTGGTCTCGCCCGCCCCCGTCTTCTCTCCAGATTTTCCATTCAC
GGGGCTCGTTTTTTCCGGCCGGGAACGCGCGATCGGGGGGCTCATGGCGGTGGGTAGGGA
GTGCGCGCGCCCTGGCCATGGATCACCATGCGCGAGACAACGAGGAGGAGGGCCGACCAA
TCCAGCTGTGACACCGACGCATACACACAAATTTTTTGAAGGGGAATGGATGGGGTGAGC
CGGGCGGCTCGGGGTCTTATTCAGGCCGAATTATTTGCTGTGTTTCGAGTTTTCCAACAA
CTGCGCTAGCGTTGAAGGTTGATTTGTGTTGTAAAAGGAAAGGCGAATTCGCTTCCATGG
ACAAGCAAACAAACGGACCGAATGGACGGTCCATTATTCGATCAACCCGCGGCAATCAGG
CATGCAAATTTTTCTTTTTTGGGCGGCGCTAGGGGCCGGGGCCGCACCCCCACCGCACGA
TCTGATTTTTTTTTTTTGGAAAACGAGGTTAAACCTTAGGTCTCTGCATCAATCGATGCA
TGCAGCCATCTTTATTAATTATTTCACAAATGACTAACAAGAGTATACATCAATCCATCT
AAAGTCATCACTCACACCTACAAACTCGATAATGTGAAGTGCTCTCACTTCACATATCTA
AGACCGGTGTTGTCGTCAATCCATCCACATAACGTATCGGGAGCAACAGCCGGTGCA