morexGenes - Barley RNA-seq Database

Contig contig_161588

Source Contig contig_161588

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_161588 (2156 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_161588

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23021	4	1150 bp	AK363761	Available	Available	None

CDS Structure of MLOC_23021

Contig Sequence (2156 bp)

>contig_161588 2156 assembly3_WGSMorex_rbca.fasta
TTTTCAGAATTTTTTGAACCATAAAAATTTGAATTTAAATTTTTCAAAAATAAAGGCCTC
CATGAAGCTCGGCCTCCAAAACGCCATTCGCCTCCCTCCCTTCCTAAATAATTGTAGTTC
TCCAAGCCTGCCAAATCTGACCGGACAAAGAAACATGGCCATTCCAACAACATAATCAAG
TCAACACGGAGAGTAAGTACCACAGATCTTCCAGTCATCTTAACTAAGGCTAATAGCAGC
AAGAAAACAGAAGTTTATGACAAGGAACAAGAAACCAGGAACATGGAAACGAAACCTCTG
ATCTCGTTTCAGTACAACCGTTGCATCCGTAGCTTCAAAGTCTCATTTAGCACCAGGGAG
AGAAAAAAATTACCCATGGGAAGACTGGACGACACACAAACCACTCTGACTGACGTACCT
CACCACACAGACCCTGAGTCTACAGTTCTTTACACAGACAGTTTCATCCGTTGCATACTA
GAGCCCAACTTGATAATAGGATTGGGCTGCAAGCTGCATTTTCTCTACAACTCTAGCGGT
GCAAGCGCCACCACCACTACAACTACGATCTCATCTCCGAGATCTTGCCGGTCACCACCT
TCTCCTGCTGAAAGCCCTTGGGGTACACGAGCACCGAGTCGACACACAGGCCACCTTTCG
TGTGCGTGCAGTCGATCTGCGCCATGGAGAACTTCAGCTTAAGTGATTGGCCTGGCTTCG
AGGAAACAAAATCGCCTGCATGGTACAGAACCCAACTCCCGGGCTCGTCCAGGTAGCATT
GAGATAATGCATTCTGGCCGTCCGAGGTGGAGAGCTGGAAGCGCACCGGCTTCTTGTTCC
AACCATGGACGTGCTCAGTGCTACAAACACGGCGTCCAAACCGCTTGCTGAACTTCCCGA
GATGAACCCTGAAGTACAAACTGTAGGTTCCCACAGGGAAGCAGAAATCAAGCTCTCCAA
CCACTTCAAACCACCAGATTTGCTGAAGGTATGCCACGGACTGGAACCTGCATGAGCATA
ATGGGTACACATAGGTCAGATAACCGTTCTAGGAACAAGATATCATGCATCTTTGCTGTG
TTAGAATATAATTACATTGAAAGATATTGCACAGATGAATATAATTACATCTGTGTGAGG
AGTCAATATCTTCCACTGGCAGAGTAGGCACATACTTCTCGTGCCATCAGTTGGAAGGAC
TACATCTAAGTTACGTTTTGATAGCACTGGTAAGATAAAGGCAGACATCACTCGTCTATG
TTGAATTTATGTGTCTATCAGAGCAACAGGCAAAGTGAGTGTATTTTAAACAAGAAATGA
GAACAGCGTACTCCCTCAAATCCATATTAATTGTAGCTGATTCGGTACAGAGTTGGACTA
AACCAGCGACAATTAAATGTACAGGGGCATAATTTTCAAAAGCCTTGTGTGCTCCGAGGA
AGAAAAATGCAGAAGTAGACGTGCAAGTTGGACTAAAATGCAGAAGTAGACGTGCAAGTC
CAACTCTGTCCCATCTTCTACAACAAAAGACGAACAGCTCAATCTCGCCATTAAGTATGT
AGTTACGTCATTCAATTGCAAGTTGCAACCCAAACATCACATCTTTCTGGCACAAACTGT
AAGCGCGAGATCGAGTTTTTACCTTGATTCTGTGGTCGGCATGTGCGTCCAATATCTCCT
GTCATCGATGCCAGTTATGACCAGAGCTTTGGAGGATAGCGCCATACAAACCCTACCTTT
GCTCTTCTCTAGCCAAAATTCCTGCAATTACAAAGCACACAAAATATAAACCATTTAGCA
CTAAAAATAGTTCTAGCTCCTATAGATAAAAAGGGAACCAAGATAGTTTTCGGTGCTGAA
ATTGTTTCAAAATAGTTTTAGATGAGTTCTTCCCCTTGACACTAATTAACTCTGAAACGA
TTCAGATGTCAATATTTGGCTAGTACTAAACAGATACGTGGATTAAGACATCAGACTCGG
TAAATAATAACAATGATTCAAGCACAAAACTGATTGGCCAAAATCATATAGACAAGCTCA
TGAGGGGTCTTGTTTGCGTTGCAAAAAAGAAAAAAAAAATCATAGACAAGCACATGGAAA
GGGACCTATATTCATGTAGAAGAATATCTAACCTTGGTGCCGTCGTCGAAAGAGAC