morexGenes - Barley RNA-seq Database

Contig contig_161563

Source Contig contig_161563

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_161563 (2851 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_161563

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_23011	1	951 bp	MLOC_23011.1	Available	Available	LOC_Os02g36530.1, FRAME:-2, EVALUE:7e-12, 13102.m03986 protein hypothetical protein

CDS Structure of MLOC_23011

Contig Sequence (2851 bp)

>contig_161563 2851 assembly3_WGSMorex_rbca.fasta
TGATTTCTTATAACAAGACTTCTCTCATGTCCTCGGAAACAAAAGTAACTACTCACAAAT
CGTCACCATGTTCAAGATCATAGGTATGATAATTACGAATAAGCATTTGAAAATATTATG
TTTCACCAAATAAACCACTATAAGATGTAATCAACGCTACTAGTAACTCACAGGTATCAA
TCTGAGATTTTGAGACAAAGATTTCTTACAAGAGATAAACTAGAGCTTGAGATGAGATGG
TGCTAATGAAGATTGGTCCTCCCACGAAGGAGGAGACATTGGAGATGATGATAGCTTCTA
TTTTCCCTCCTGAAGGGAAGTTTCCCCAACATAATCTCTCTAATGGAGAGCAAAAGGGCC
TCGGCCTAGTTTTGTGCTCGAGACGGCGATGCTTTATCCCAAAAGTATCTTCTTATTTTA
TTCTAGATCACAATTCTGGAAAATAACTCATACGTGAACCCCGTTAGTGGCGAGCGTTGC
ATGTCACCCGCCATTGCTAATTTTGAAAGCAAGGTGTGGCGAATGCTAAAACAGCCCCAC
CGGAGCTACGCAAGTAGATGTGGTGGGCGCCAAGATGACCCGCCATAGCTATGTGTTTTC
CAATTCGAGCCCGGCTAGCAAGCTACCATGGTAGGTGCAGAATATTGCGCAGACAGGTAA
AAAACGGAGATCAACTCAAATAATGCAGGATTATTCTTGACATAATTTCTGTCAAGTTTG
TTTGACCAATCAACAAAAGAACTTGCTTTACACCCTCCTTGGATTCGGAAGAACAAACTA
ACACACACACACGCTCCTAGCTAGAAGAAAGTTGCGGCTTACAACTTCGTGGCATGGCAA
ATACAGTACTGTAATACAATCAAGAGGAAGTAGCCGCCACCGCCGCCGCTTTGGGTTTGG
GGTGCACCTTCTTCTTCATAAGGCCAAAGAATCCTCCCCTGCCGCTCGCGCCACCACCAG
CAGCCTTCTTCTTGTCTCCAACGGCGCCGGCGGCATGCTTGTCGTCCTTGCCGCTCTTGG
CGTCGTCGAGCGCCGCCGCTTCGGCTTGGTCCATGCGCCTCATCTTCTCCTTGTAGGCGT
TCTTGAGCACGTAGGCCTCCACGAAGTCTCCTCCCATCATCGACGCCATGTCCTATCACC
TCCTCCTCCTCTCTTCTTGCTGCTGCGCCGCCGCTAGCTGCTGCCTCGCTTTGAGGTAAG
AGGGTGTGGGAGCCTAGGTAAGAGAGAGTAGGGTGGATGGATGGATGATGCTTCCAAATG
CTTTGGCACTTGTGGGAGGGTTGAGGCGCGTGCCCGATCGTTATATATAGAGTAGGACGT
GATGGACGGCCAGGAAGATTAGACTTGACTTGGCATGCAAGCTGCTGAAGCAACCGCGGA
AAAGTTAAAAGCAAGAGAAGAGAAGGATCGAGGCAACTTGGGGAGCACGGGGAGAAGTCA
TGTCACGGGTGACGTACAAGTCCAAGGCTATCTGCTCCACAACGGCGGCAAGCAATTTAA
CCACGCACGCACCGTAGGATTTTGCCGCCGCGAGGAAACGCGCCGGAAGGAGCAGAGCAG
GTCAAGCAAGTGCGAAGTACGCATGCACGCACGCACGTGGGGAGATTGGCACGTACTCCC
TCCGTTCCTAAATATAAGTCTTTCCAAAGGTTTTATCAGTGGACTATATACGGATGTATA
TAGACTTAATATAAGTCTTTCCAAAGGTTTTATCAGTGGACACTATATACGGATGTATAT
AGACTTATTTAAGAGTGTATATTCATTCATTTTGTTCCGTATGTAAACCCCTAGTGAAAT
TTTTTAAAAGACTTATATTTAGAAACGGGGGAGTACTTGTCCTCCTCTTATTGACCATCG
ATCTCACCGACCGCCTCGCGTGTGCTCCGCGTGCCGCGCGATGCAAGACACGACGACCAC
TGTCTTCGCTTCCTTCCCGTTTCTCTTTTTTTTTCATCGTAATATGTGTCTTATTTTTAT
ATCACAAGGATTATAGGACAACCTGACAAAACCAAAAACAGAACACTAGCTTATACACAA
AGAAATATCAACCAAAAAACAAAAAAATAGAGTCATAACTTAAGAATCCTTTGAACTTGG
CGCCAACGCCCGTCACCTATGCACTATAGCAGTCATCAAAGAAGAAAATAACGAATCACC
TTTTCATCCGAACTCGACGAGGCTTCATCGCTGGTATGCCGCTTTGCTGACCTACAAAGT
GACTCATCAAAAATGAAACCATTACTATTGAACAAAACAGACCGACGCAACATTCCAAAC
ACGGAAGACTAATAATGTTTAGTTCCCAACTTCCACATAGATACGTGTACGAATCAGTTG
ATAAGAGTATCCCTGTCACTCTGACGACCCCATCAAAAGGACCAGTGAAAGACAAACTGG
TCCCAGCAATCAGTGTGTACGGCTAGGATATACCGGGCGTCCCTCCATGTCGTTGTACGT
ACGTGTGACTGAGTGGGTAGCCTGATTGGTTGAGCCTGCATGCTCTGTAATTCTTATTAA
TTAGGGCATATACTAACGATTTTGCTAAAACTCATTCGCATGAGAAATCTTTTGGTCTCA
TTCACTTTTTTCAATCGTCGGATTCAATCACGCTGTGATCCGTGTTTTGTCTTTTGTTTA
GACGAGGTGGAAAGCTTCACAGTGACAAAGGCCGTGTCCCACTGCTCGGCTCGCGGGCCG
TTTTTTTTTTGCCGCACCTTTTTTTATCTCACACTCAGAAGAGAGGACCCGTCATGGGTT
TTCGTTTTTCTCTCCGTGACCTAGGCTGCATGGATGCACGGGAGATAAATAAAGGTATAG
GTGTCTTTTTTTTGCACTTTGTTTTTCTTTG