morexGenes - Barley RNA-seq Database

Contig contig_161140

Source Contig contig_161140

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_161140 (1615 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_161140

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22747	5	1142 bp	MLOC_22747.5	Available	Available	LOC_Os01g72880.1, FRAME:+2, EVALUE:1e-18, 13101.m07948 protein DNA mismatch repair protein Mlh1, putative, expressed
MLOC_22748	1	159 bp	AK367944	Not available	Available	None

CDS Structure of MLOC_22747

CDS Structure of MLOC_22748

Contig Sequence (1615 bp)

>contig_161140 1615 assembly3_WGSMorex_rbca.fasta
TTAGGAACGGAGGGAGTAGCATATATCATATGCCTATTTCAAGCTAAAATGTTTCTTAAA
TACACTATACTGCCACATCACATTACTTAACTGTGTATTATTGAGCTATCTAGTAAAGGG
CGTGTGAAATCACCACCATCCAGTGAATAATCTTTAGTCTAATTATATCATACTGTAGGA
GAAAAATCTCAAAAGATTCCTGTGAGCCAAATTGTCAGAACAGATCCTCGCGATCCATCT
GGAAGGTTGCACACCTATTGGCAAGGTCAAACTTCAAATCTTGAAAAGAAGTCTGACCTT
GTTGCCGTAAGGTATGATCTTCATTAGCAAGTTGACACTTGTCACCACTTTGTGTATTTT
TTATGCTCTCTTATTTGGTCATCTGTTTGTGCTCCCTGATTTTTTTTTCTGCATGCGCAT
CAAATTGTGCACTAAGTACCTGTTGTTTGCCTTTCCTCATCTGAGGGTTTAACGATTCAT
GCTGTTTACATGCTACAAGTCTAACTCTGGTTAATTTGCGAGTGCTCGACCTTTTTCTAC
ATTGGTTGCCAATTCATAAATTCGATTTGAAGAAGGGAGTAAAGTGATTCGCTATTTTTT
ACTGTGGCTGATTTTTTTCTTCTGTCTGTATATGGTTTCCAAGAAATATTGTAAGATCAA
GAAGGAATCCAAAAGATGCTGGTGATTTGTCCAGTCGCCATGAGCTTGTTACAGAAATAG
ATTCTAACTTACATCCTGGTGAGCTCATCTTAACCTGTGATGTCCAAATCTGTCTCCACT
TTTGTAGACTGATGATTTATGTTTTTCTGCTAGGCCTTTTCGATATTGTTAAGAATTGCA
CATATGTTGGAGTTGCGGATGAAGTTTTCGCTTTGATACAACACAATACCCTCTTATACC
TTGTCAATGTGGTAAATGTTAGGTAAACTCTATACAGTACATTGATGACTAGTCATACTC
TTCTATGCTTTGTATCTCTTATTTAAGCTAGATTTTTTCTTCTAACATCTGACATAGTTA
TTTGAAGGTAACCGATACCCCAGTTACCTGTACATATTTGCAAATGCACGCGCACACAAA
CAATATTGCTTGCACACACCACCATCAAACTGCTATCCATTCACATCGCATCCAGTTGAA
CGCCTGCAACTGCTAAATAATAAGCACCTCTTCCAAATATTGCATTGTTTTCTTTTCTGT
ACCACTCCCTCTGTTTCTAAATATAAGTNNNNNNNNNNNTTTCACTAGGGGACTACATAC
AGAGCAAAATGAGTGAATCTATACTCTAATATATGTATATATACATCCGTATGTAGTTTT
CTAGTGGAAATTCTAAAAAGACTTATATTTAGGAACGAAGGGAGTATATGATATTGATGA
TTCAGCTTGTGATGCAGCAAAGAACTCATGTACCAACAAGCCTTGTGCCGTTTTGGGAAC
TTCAATGCTATAAAACTCAGTGAACCAGCTCCACTTCTGGAGTTGCTGAGAATGGCACTG
AAAGATGACGAGTCAATGAGTGATGTAAATGAGAAGGAGAAACTAGAAATTGCAGAAGTA
AGTTATTTTCTTAATTCCTCGAGTCTTGATTGATCTTATAGGTGATAGAACAGAT