morexGenes - Barley RNA-seq Database

Contig contig_160879
Source Contig contig_160879
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_160879 (5984 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_160879

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22579	1	1547 bp	MLOC_22579.1	Available	Available	LOC_Os05g39950.1, FRAME:+2, EVALUE:8e-62, 13105.m04212 protein DUF623 domain containing protein, expressed
CDS Structure of MLOC_22579

Contig Sequence (5984 bp)

>contig_160879 5984 assembly3_WGSMorex_rbca.fasta
GATAGTTCTTCGTGCGCGTAGGAAAACTTTTNNTTCCCATGCGACGTTCCCAAACAGTTA
GCGCAACCATAACTGGGTGACCCATTTCATTCGCGTGTGTCCAGTTGGGTCAGCGTGGAC
ACAAAGCTCGGCTCAACGTGGCGACCCAAACGGACGTGCGCTTGTTTTTTGTCCGCACGC
GACCCACTCCGGAACCAAATTTGGGCCGCATTTGTGTCTGTGCGGACACAAGACGGACTC
ACGTGAAGCCCACCCTTCTCCTCCCCTGGCCCGCTAGTGGGTGGTATGCGGGCGAGTATC
ATCTTCCTCCCTTCGCCTTCGACTCATGTGGCCGCCCCACCTCCCGTCGCCGCCGTCATG
TTCCGCCGATGTCGCCATCCATCCATCCATAGATAGGTCAACCTCCCGATATCCTCATCT
CCCTAATAATGTTGAGATCAATGGCCAGAACTACAACAAAGGATACTATCTAGCTAACGG
TATCTATCCACATTGGACTATTCTTGTCAAGACAATCCTCAAACCCTAGAAGAGAAAGGA
AGAGACTTGCCCAAGGGCAAGACAGTGCTAGGAAGGATGTGGAGCGTGCCTTTCATGTTC
TGCAATCTTGATGGGCTATTGTTCGGTATCCTACAAGAACTTGGAGCACCGAGAAGCTTT
TGGAGGTGATGAATGCATGTGTGGTCATATACAACATGACGAGAGGATGAGCGCCCATAA
CATCTCTACAATCAAGAGTTTCAGTTTCACGGTGATAATGTTGTGCCTGAGTATGGAGTA
GCGGCAACGTTACACATTTCACCGAGTTTCGTCATCAGATGCGTGATTGGAAAACTCACA
TTCAGTTGTAAGATAATTTGGTTGAATATATGTGGGCTCATTGACAACCACTAGATGTAT
CAGCCACCTTTTCTATCAAATATATTTAAGATAATTTAATGTTTATTCGTCTTGTAAACT
GTGAGATATTTATGTGATTCTAGAACAATGCAATATTTGTATTTTTATTGAACTATGTTA
ATTTAGGATCAAATTATATACATATGTGACAAATGGCTGCAAGCTGGCGGACAAAAAATG
GGTGACATGTCCGAAAAACAGGGCGGACATGTCGAGCCAAACGGATAAAACGTGGACAAA
CCGTGCCGCGCGTCCGTTTGGATCTCCTCGTTGGAGTTACTAGACCATGCCCCGCGCGTT
GCGACGGTAACCTTGTTAAAAATGTATGGATAAATGATAGAAGACTAAAATTAATGAAAA
ACAAATATAAATGTTTCTTACATTACTTAATTCTTTAGAAAAAATTAATGCATGACTTAA
TTCCGTACGCAATGTCGTTTTCCTCTGAACCAAGTTTACGACAAGCTCGATTATTGTGTT
GCTGTCGGAGCATCTGTTTCGGCTTCGAGCGCAAAAAACGGTTTTTTCCCACGCATGACT
AAGATAGCGTGTGTTGGAGATGCTCTTAGAGCATCTACAATAAAACGCCTTAAATGACTT
CTCATACGTTCGTGGACATCCCCTGTCAATGACCGGACACAAGAGAGAAGGGAAAAAGTG
ACTCAACCGAAACTCTCATATCAAGCATATACGTGCGACCTCTCCGCGGATCCTCGTATC
CATCTCAAATATAAGGAGGACACGAGGGCTTGCAGAGGCGCCCGGACACGCCCGATCAGT
CTATCACGTAGGACGCTACCCGACACGAGTCCACATTTTTCTTTTCTTTATTAATTTTTT
TCTCTCTTCCTTTTCATCAATCATGTATCAGTGACTGGACATATGAGAACGCAAATGAGA
AGTATGTCTACGCGGACCGATAAATAAGGGATACATTTAGTAGTTAACCTGACACGTTCA
TAGATGTTTAAAGGATTATATTTGCAATGTTCGGATATAGATGCTTTTAGCCCGTGTGGA
TTGTCCGTTTGGACAAAAATGCGGACGATTTTGGGGCTGCGTTGGAGTTGGCCTCAGGCT
GCCGCTATTTAACCTTGTCCGGTCCCTCGGCCCCTCACCGTGGTCGTGCTCGTATTTTCT
TTTTCCTCGCTGGTCCCCTGCTCCACCTCTCCACCTCGTACTGTCGTACAGAGCGAACAG
AGCGCGCACCGGCGGCCGGCGAGGGCGCATGGTTCGCCGCAAGTTCCGGCTGTCCGACAT
GATACCCAACGCATGGTTCTACAAGCTCCGCGACATGCGCCCCCGCGGAGGCGGCGGCGT
TGGGGTGCATCATCGGTCCTCCTCGGCTCGGTCCTACCAGCCGCCGTCGTGGAACCGGGA
GTCGTCGGCTCGGTGGAGCGTGGAGGCGGCGCCGCAGCCGCCGTCGTCACGGTGGAACAG
GGCGGCCGACAACGACGTCAAGCAGCCGGAAGCCGACGTCGAGCCGCCGGTCACGCCGAC
GAAGGGGTCGCCCCGTGCCCCGCTCCCTCGCAGGGCGTCGTACTACTACTCCACCAGAGA
CAGGGAGGTCCCTGCGCCGCCGGCTCCGAAGCCGCCCAGGGCCAAGGACGCGCCATCGCC
GGCAAGGAGCTCCAGGAGGCGCCACAGGGTGGGCCACGCGACTGGAGAAAGAGCACCTGC
GTCAGCGTCGGTGCCGGCCCAGGGAAAAGAGCCCGTGGTCGATGCAGCCGGCCGGTCTTG
TCGCCGTCGTGACCTGTGCATCAAGAGTGACGGCGGGGAGCCCCGGAGGCCAAGGGCGAC
AGGCCCGCCGGACGACGGCCTCAACGTCAAGGTGATCGCGTCGCATAACGAAATCATAAT
CGACCTGCAGGAAAAGGACACACCCGAGAGAAGACTCCGGCCAATCGTGACCAGGCCGGC
GAGGAGACAACCTAAGCCAAACGAGCAGGATGGCAACAACGTCGACCTCGCCGACGTGAC
CGCAAGAGCAAGTTGTGCCTCCGAGGAGAGCAGCATCAGCAAGCCGAGACTGTCTTCGGC
ATCGTTGTCGGGGCGCCGCCGCCTCAAGACGCTCGCCAAGAGCCCGCGTCTGACCGCCAC
CGGCAAGAAAGTGAAGCCGCCGGCGCGAAATTGGACGGCATCACCGCCACTGCTGCCGGC
GCCGGTGATTGTGAGCAGCTACCCGGTGGTGAAGATGTCGGAGGACCCAGGGCAGGACTT
CCGCGAGTCCATGGAGGACATGATCAGCGCGAAGGGCATCCACGAGGCCGAGGACCTGGA
GGACCTCCTCGCCTGCTACCTGTCCCTCAACGACGCCGAGCACCATGACCTCATAATCGA
AGTCTTCGAGCAGATTTGGGTGAGCCTCGCCAGCGCCAAGCCGTGAAAGCCGCCGGCCAT
GGCAGCTCCGTGGTGCAGCAATGGTGGATCCTATCCTTACTATTGCTGCCACATTAATTA
ACTAGATTAATTGCGTCTATATCTCGTTAATGACAGCGATTAATAGGAGATCTCCATAGA
AGGAAATTTGCAACCCTCCTGCGTCTGCAACTCTGCATGCATTGTTCATCTCCATAGAGC
GAGTGAATAAAATAAAAGACAAAGCTTTTGTTCTTTCCGTGCTCGGTGTGATTCTACTTT
AATGGATGCTTGGTCGCGTGATGATGGTGTGATGCTGCTCAATGTGTAGAGCACTGCACT
TGTGAACTGGATTTATGCCAGTAAGACAGAAACCGTCACTAGTGACGTTGTAGTTTGCTT
CTACGTTGGAGGATCTCGTTCCTTCCCTCATGCCAGTAAGGCACTAACCGTCATTGGTAG
TATCTTTATTTTGGACGCTCGTCACTATTAGTATAGTTTGTTTTGTTTTTATGAAACAAG
ACAAAAGATTTTTTTTTAAACAGAGTCAAAAGTTTTTCTTTCTTTATTCATTTGGAAAAA
GTAGTTGTCCAGTTAATTGATGGAACACCGTGCGAAGACCGATGGCAAAGGATTAGCATA
TACTCCTGCATGCGCAAAAAAAAAAACACCAGGAAGGATTAGCAGTGGAGTAGCACGACT
CTTACTGAGTTACACTGTTACTGGCATGGATGTCTGTAGCATGCAGTAAACTACTTCAAG
AAGAACTTGCTGTATGTAGCAAGTTGAAATGGTCCGATCGACCAGGATGTGTTGTAGCCA
ATCAGATCCAGATGATCGTAGAGACAGAGTGCGACATACGGATTTTGTGTAGTTAATTCA
GCCTCTCTTCTCTCAAAAAACTTGGCTGTTTTATGAAGAGATCAGGACCTGTAGTAAATA
AATTCCCTTCAGCCTCCATTTCTACTGTTGTACGCGGTCGTGTGATGAAGGCGGAGAGGC
TGGTCCTTATCAACAGCTGCGAGCGCTCGGATCAGAAGGGTGCCATGGCTTCGAGGAGCA
GAAGGAAAGCTTCTTGTTTTGCATCAAGGAAAACATGGGATGATGCCCCAGAAGTGGCAT
CGCCTTGTCGACACGCCGAGCAGGGTGCCGAGTGACCGATCCTGGACCGGCGATTGCCCA
TCACCTGGCAAACGCTGCCGGCCGCTGAATGAGAAAGAGAACAGAAGAGTCGAGACGAAT
GGTTGCCCGCGGAGGCAGCACGGCTGAACCTGGTCGTGATTAGTTTCTGCAATCTTTACA
GGTCTATGAGGACGCGGTCTTGACACGACTCGGTGCGCACAGGCAGAGCTATAGTATGGT
TGCTCACGTTCACGTACGTCCTACTCACGGATATCTGCCAAATCGTCCCACATCACTCGA
CATGGCAGGACCGCACCGCATTCGCGCAACAACTGCCCTAGCCTTGTCCCGGCCGTGGCT
TTGGCTGCGTGCGTGCGTGCGCGCGCGCGCGCTCCCCGAGTCAGCACGCATGTACGCGCA
CAGAGGAGGGCGGTGACACTGTGTGTCGTGTACCATCCCCGCCAGGGGAGTGGAAGCGGG
CACAGTGCGGCTGACTGTTGGGCTCTAGGCCGAAGCTTCCAGCGCGAAACTAAAATTTGG
GCCCCGTGCGGCCGCCCCCCGGACCCTGCCCCCAGGGTCACTCGCATGGGCGACAGGACT
TGGGAGTCAATCTGTCACCTCCTCCGTCCTCCACTTGGCTGCATGGACAAGATGTTTCGT
TTGGAAGACGCAGGCAGGCCGCAGTGGATTGCTCCAGTGCTGTGTCAATCATTCATTCGA
TCCGAGTCGGCCGGTCGCGCATGTATTGAACACGCACCCTCAAGGCACGAAATTAGTGGT
AACAAGAGCTTTGAATGGCATCACCTACCTGCTCATGGTGCTGCTGGCGGCATTCGCATG
GGTGTTGATTTGGATGTTTATGAAATCTCTAACCGGGTTAGAGCAACTCTATCGGGCCGA
TCCAAACGTATGACGATTTTTTTTGTCTGTTTGGATCTGTCAGACGGATACGAACGTCCG
TTTAAGCGTTTGGGTCGGCGCATGCGTCCAACGCTGGCTTGACCCATTTTAACGACGCGA
GAAAAAATTCCATGTATATTTAAAATAAAAACAAATTAATTAAACATTAAAGCCGGCCAC
GAACACGAGTGAGAGTCCACGCGTCAATATTTGCATTTAAGAAAAAATAAAAATAAACTA
AACTACGAGGCAACGCGCTGCCCTAGGCGTCGTCGTCCTCCTATTCGGGGTCTGTGAGGT
TGATGAGCGTCGGCGCAGGGCCGATCCAGGGGAACGCCGTGTTCCAGAGGGCGTTCATGC
CGTCGCGGGCTGTGCCACCGCGGCCTCGCGCGCCTCCTCCTCGGCCTCGCGCCGCTCCTC
CTCGACGTCGCGCTCGAGCATTTCGAGGTACTCATCGTGGCGGCGCTCCTCTGCCAGCCG
TCGCTCGCGTCAGTGTCCGAGGTACGCCTACTGCGCCGACGTCACCCCAACCCACACCGA
TGGCGCCCTGACCCACTCGCGCACTACTCCCGTCCAGGAGTAGCACTCGATGGGGGGCGG
CTCCGACTCCGGCTTCGCATCGGCTTTGATAGGGGACGACGGGGTCACATGCGGCAGGAC
GCAGTCGCCCGCTGAAAGGGCGTGGATGTCACCTAGAGGGGAGG