Contig Data
morexGenes
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Map Locations of contig_160786 (4206 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_160786

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_22512 2 2032 bp MLOC_22512.2 Available Available LOC_Os05g33280.1, FRAME:+1, EVALUE:2e-147, 13105.m03439 protein thylakoid lumen protein, putative, expressed





CDS Structure of MLOC_22512






Contig Sequence (4206 bp)

>contig_160786 4206 assembly3_WGSMorex_rbca.fasta
TCGCCGATGGCGGAGGGGCTCGTGGGACTCGTAAGCAGCGGGGGGCGTGGCGCGCATGGC
CGGCGTTGTCCCTTGCTTCTCCTCTGCCTTCTAGCAAGAGGTAGAAGACAGGGATGCCCC
TGGTGGGGTGGGCTGGCCCAGGTGAGCGCCAGGTAGTTTTTTGCTTTTTTCTATTTCCTT
TATTTCCTATTTTTCCAAAATTTGTTTTGGTTTTAAATAAAATATAAAACCATTTCTAAA
AATTCTGGAAATTATCATGTGATATGAATGGAAGTATCCAATGCCACATAATAAGTTTCA
TGATATATGGAACTAAATTATATATATAGTAAATATAATTCCATTTCAAATAATTGTTTG
ATTAATTCAGAAGTCCAAAATAAATGTTTCTCTGATTTCAAAAATATTGGTTGACATTTT
TACATTATGCTAATATTTTATTCGAAAACGAGGGTCATTTTCTTGGATCATTTTGAAGCA
ATTTTTATATTTCTTATTTGACAAAAATTGGTTCCTCACGCTTGATCACTTCCTCATTTC
AAATTCAAAAGAAAATAAAAATGCATGCATGAATGCTTCGCAAGCAAGGGTAAAACTAGG
GTTGTGACACCTTGCCCTATGTCCAGCGTCACCGGAGTCGGCCTGATTAATGGACCAACG
AAGGATATCGACTGACATAGTACCCTTTGTTGTGTCAGGAATCATCGTCTTCAACTCCTC
CAAAGTTGTCTTCCTCGCCGTAGCGTCTCACTCCTTGTGCATTTCTTCCATGCTGAAGTT
CGAGCAGACTTCCATGGTGTTCTCGAACTTGGTGCGGTCACCGAGCAAGCACCCGAGGAA
AAAAGGCATCCGTCCAATGCCCTGACAGAAGGGGTTGGGGATGGGTTGTGGTTTCTATTG
GAGTTCATGGCAACGGATAGGAGGTAGAGTGACGGACATAGAGAGTTATCTGAGTGAGGT
GGTGGGTAAGTAGTGACCGTGAGGATGGGTAAATAAAGGGGTTATGGCTGATAGGTTTTA
ATGGCTATGAACCTTTGAACTTTGTGCTCTTCATAATGTAGATCGAGATGGACAAGTGCA
AGGAGGTGTTGTCGCCCATGGAGAAGGCAAACTGCATTGTGCCGCCCATGGACAAGGGCA
AGGACGTGGTGCCGCCCTTGGAGATGGTGCCGCACACGCCCTTTCAGGTGCCGCACACGA
ACAACGACGTGGTGTCCGAGGAGCCCCCCAGCGACAAGCGTCGGAACTACGGGCACTAAC
ATGAGGAGGGTGGGCCAACTCACTTCTACAAGGTGATCATGGCCCCAAAGCTCGAGGTCA
TACCAATGTCCCTAAACTTCACGAAGCACTTCCTCACCGTGCTAACAGAGTTAGAGCTAA
AGACGAACCCCGACTATTCATGGATGGTCACTGCCCGACAGGGTTGAACCACCTTCGGCG
CCGTTCATCAGACCAAAATCGGGTACATGGTGACCTTCAAGTTGCTGACTCCCAGTACGC
TCAAGGTCATCATCTTCAACAACGACGCCATTGAAGTAGTGACCAAGTGCGGAAGGCACG
ATGACACCTTTGTCGTGAACGTCTAGGACGGCTATTCGTTGCTCCAACCGGTTTAGTATC
GACTATATCATGTTGCTTTGCTTCAGAACTGCTATGTTTAAGTATAGTACTATGTTTAAA
ACTGGTTGTTATGGTTTAGAACTATGTTAATATGCTATCTTTTGTGTGCCTTTGGATTCT
TCTACGCGCCCATATATGTTGGTAATCTTACCACCTCGTCGAAGAGGTTATGAGACAACA
GGCGTTGCATCAAACCAAACACTATGCCTTGTGTTTGCGCCTAAGCAAACAGGTAACTAA
ACAGGTTACCTTTCATTATACGTCGTACAGGCTAGAAGGTATACAAGCAACCAAACTAGA
TGCATATATTAAAAAATATACATGTTTTTTCCTCAGCCATGCCCAACTACGCGATGCAAG
CAAAAGTTGGTGCGAGAACCAAACAAGCCCTAACCGTTTATGGTTATCTTTGGGTTTTTT
CATTTCCGTTCACGATGCCTGTAGTCTGTAGACGCAAACAGCAGAAAAAACCATATAGCT
ATGCAAACTGCAAACTCCATCGCATTGTGACAGAGACAGACATGGCGGGGCGTCCACGCT
GGAGCCGCGCCTTATCCGACTCCAGAATCCCAGCCACCCAATCACGATCCGACTCGAGTG
ACGCCGCTCACAACAAACAAAATGGACGCGGCAGAGCAACTCCGGCGTGATCTCTGCCCC
TCACAAGCCCCACACCCCGCTCCGCGGCCATGGAGACCCTCCTCTCCCCCTCCGCATTGC
TCGGCCCGCTCCGGGGCTCCAGGAAGCTAGCGGCCCCCGCCGCCGTCCCGTGCAGCAGGT
CCGCCGTCTCCTGCTCGCTCAAGAAGCAGACGCAGACGCAGGCGGGCGTCGCCTGGCATG
GAGACGGCGGCGTCGGGAGCTGGGCGTCGTTCTTGCACCATGGCCTCGCCGCGGCGGCGC
TGTCCCTGGCCCTGACCTTGTCGCCCGCGCCCGCGCCGGCCGTGGCGTCGGAGTTCGACG
TGCTCAACGACGGGCCGCCGGCCGACACGTACGTGGTGGACGACGCCGGCGTGCTGAGCC
GCGTGACAAAGTCCGACGTGAAGCGCCTCGCCCGCGACCTCGAGGCCCGCAAGAACATCC
GGATCAACTTCGTCACCGTCCGCAAGCTCACGGTACGTGCAGTGCAGTGTCTCGATCAGT
AAGCGCGCGGCTCGTCGCCGGCGGCCGGCTACCAAAAGCTCACGCGTGCCCTTGCTCACT
GGGTACGTACGTACGTACGTGTGTGTGTGTGTGCAGAGCAAAGCTGACGCGTTCGAGTAC
GCGGACCAAGTGCTGGAGAAGTGGTACCCGACGGTGGAGGAGGGCAGCAACAAGGGGATC
GTGGTGCTCGTCACCAGCCAGAAGGAGGGCGCCATCACCGGCGGCCCAGCCTTCGTGCAG
GCCATCGGCGACGCCATCCTCGACGCCACCGTCTCCGAGAACCTCCCAGGTAATCAATTA
GCTCTCCCTTTCCATAATGACCGTTAGATGCATGCTATAGTATACGATGTTCATCACTAG
GGCGGCGACGGAGCATGAGATGAGCGTTTGATTGATATGCTCGCATGCATTGCATTGCAG
TGCTGGCGACGGACGAGAAGTACAACGAGGCGATCTTCTCGACGGCGAAGCGGCTGGTGG
CGGCCATCGACGGGCTGCCGGACCCGGGCGGGCCGGCGTTCCAGGAGAGCAAGCGGGAGT
CCAACTTCAAGAGCAAGGAGGAGACGGACGAGAAGCGCGGGCAGTTCACGCTCGTCGTCG
GCGGCCTGCTCGTCATCGCCTTCGTCGTGCCCATGGCGCAGTACTACGCCTACATCTCCA
AGAAGTGATCCAGTCGAGCGCCGTGCACTGTACAGTACAGTAATTTTTCGAATCCCCCCG
GTTTTCTGTTGGACTAAAGTTTTAGAAGTGAACACAGAGAGATCAATGCAAGCGCACCCG
CACTCGTGTGCAATGTTCGGAGCCAAGGAATTTGACAGATCATATGTCAGCAACCGTGCT
TACAAGGCACCGCACCTGCGGACCATGGGTTCGACCCCACAGACGAGGCCATTTCGGATA
GCACAGCCTAACACGAAGTATCTTGGGCCCCAATGGGCCACCTAGGCCCGGCACGATCCA
TCCGTCATTACTTGTATCCCTGAGCGTGTCGTGCGCATCCAGTTGGATAAGGACGAACCA
ACGGCTCTCTTCCCCTCCCACTCTCTTCCTCCTCCGCAAGATCCGCATGGCTATCCCGAT
GAAATCGAGCTTGTATGCTATCACGAACTATAGATCTGCTACCATGAACTATAGATCGAT
TTGTACCTAACATCCTGGTATCACAGACCACCATCACTCCTCCCTGCCGCGCCCACTCTG
GAGACACGACAACGCGTCCACGCGTGGCAAGTCTTCCTCGCCGCCATGGATCCAGCACTC
AAGGAGTACCTGGATCAGATGCCTCGGGACGCCAAGTCCGACTCCGTCTCCGTCCTCAAG
CAACTGCAGGCGCAATCCTCCCAGATCAATGACCAACTCCGCTGGAAGTCGGATCTCGAA
GCCCGCTTCGCGAAGCTGGAGACCATGATCGCCACCGCTCCTTCGTCGTCAAATGGAGTG
ACACAC