Contig Data
morexGenes
Links



Map Locations of contig_160729 (4012 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_160729

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_22469 12 2312 bp MLOC_22469.4 Available Available LOC_Os06g05090.1, FRAME:+3, EVALUE:2e-42, 13106.m00479 protein methyltransferase domain containing protein, expressed





CDS Structure of MLOC_22469






Contig Sequence (4012 bp)

>contig_160729 4012 assembly3_WGSMorex_rbca.fasta
CCGCGCCGACGAGGTCTTCCGGATCCGCACCAGTTCCGCCACGGCCACATCAGGCCTTCC
GAATATGCATCGTCATCAAGCTTGATCCGCGCCTCATCGTGCGGCCTCGTCTGCCTCCGT
GGATGCGCCACGGGCTCCACTACGTTGTCCAGTCCAGCGTCAGAGGAGGACCGCAGAGGA
CGCGATGCTCCGGCCTCTCCCCTCCCCTCCCCTCCCTTGCACGGGGCCTCGCCTGCGCCT
GCTGATTGACCGGCCAGCCGGCCGGCCATGGTCCCGTGCAGTGCGTGCAACGGTGGGTGC
TTGTTTTCACAGGATTTTTTTGGGGTATGCATTACCGCTACTAGTATTTCCTCTGTTCAC
CGGTTACTGTTCTATGCTGGTCAAATCTCTTCTAAGTGTTGCATGCGAGAGTTGCTTGTC
TCCGTTGCTGTGTTTGCCTCCATCTTCCCGTCTCCTTCTTATAGTACAAATTCGTTTGGT
CACTGGCATGCTAGTGATCCGTTTGGTTTGCCTCTGTTGTTTCATCTGAGTTCCGGTCAG
GGTTATTCCATCATTTCTTTTCTCAAGCTGCCGGTCTCTGTCGGGACAAACTCTGTTCTT
AGTACCAATGCTGATTGAAGTGGTGCAAGTGGTGGGAAATAAACATGAACGGTTGCTAGA
ACAGTTCCGAAGAAATTGACCATTCTGAAACGAAAATACGAGCATCTAGCCACAGAAGAG
TGCATTAGTATTCAGCAAGTCCCCCAATTTTGTCGTTCTTTCACTAACATTTTTTTTCGT
TTGCGACAGTTACATGCACTGACCAACCTGTGAAGATAGAATCCTACGCCAACGGAGCCA
AATTTTACTGCCTGCTGTTTGGTACGTCCGTCTATAACTGACGGCTCGTCATTGTACTAC
ATAGTATATTTCGATCAACTTTGTTATTTGATCTCTTCTTCGATTGTTTCTTTAGACATG
GATGACACCCTCTACCCACTGAGCTTAGGAATCAACTTAGCCTGCCACAAGAACATACAA
GGTCAGTAGCAATAATAAACCTACACCAATCCTCAGTTTTCGTGCTACAGAATTTGCGTG
TTCACATAATTGCAAATTGGAATTTCCAAATCGCAGACTACATGTTGAGCAAGCTTCAGA
TTGAGGAGAGCCTGGTTCCCAAGATGTGCCTAGATTTGTAGAGGGAATACAGAACTACAA
CGGCCGGTCTGAAAGTATGCCGGTCTCTGTTTCCTTCCTTTAACTCAACAACGAACAATA
ACAAATGCTTGACAGTGTTATTAGCATAGTAAATAACTTTCTTAACCCCATAGCCCTAGG
CCGGTGACGGTGCTGAGGAGGACGCATTCATTTGTTTTCCATATCGGATTCGTCAACGGA
TCTTAGCAGCTTCTTGAGCGCAATTCCATCAAATCCTAGGGAGCGCAATTCTTGGCTTGG
CGTGCCTCCCGAGGAGTGGCGTAATGCACCTTTGAAAAAATATTAACCTGACCATCTACA
ATTGATTCACGTTATTTCGTTGTGCCATTCGTTTATAGATGTAGAATAAACAAAGACTTG
GTACATGGTTGGTATTATGAACTGGTTAGCATTCTTCTTAAGTGAGAAATCTAAGGCTAT
GTCTGCGATATACAATTTGATATTTATTTTCTTTAGAATTGCTTGGTATGACACGATGAC
ATAATCAGAGCATATTTTTGGCCTTTCTAGATTTAAAATATGTTTTTGCAACCTATGTAT
TAGATCATGCATGTTTTGTCTTCAGCACTCCCAGCGCCGGCCATTAATTACACTTGCTAT
TGTGGTTCACTTATTATATAAGGAAATGTCGCTTTTAATATTTTTCTTGTCCAACTTGTA
ACCGGTTTTAATAAGCAGTTAAAATACCCAGTCCCCTGGCTTTGTGAGTTCAACACATTT
GAACATGAAGTATGCTACATGCTCCTGGTCACCTGTATGCTCATCTAATTACAGTGGCGT
TTGAACTAGTTTTGAAACTGATTAGATGGATGTATGAAGTGTTTCTTCCTTCCTTATAAA
GCTGGCTTATTGTATTGAAACTGATGCACTTGTAATTTGGGGCTCCGGCTTGATTGATTT
GGTGGATCTGTTAGGTGGTTCTTGACGTAGGACCGAGAGCGGCATCCTCGCCATCTGGAG
CACTCAGGCCGGCGCCAGGAAGGTGTACGCCGTCGAGGCCAGCAGCGTGGCGGAGCACGC
CCGCGAGCTCGGCCGCGCCAACGGGGTCGCCGACATCGTCGAGGTCATAGAGGGGACCAT
GGAGGACATTGTGATGCCAGAGAAAGGCGAGTCTTTTCGTTTCTTGACCCCCTCTTACAT
TTGTTTTTTCCTGAATCGATGGTGAACATTTGAAATCAGTGGTGTTGGCTGGTGGAGTAA
TATCAATCCCGGCAGTATCAAAAGAAAAGAGGCTCAATTTTTCATCTTGAAAGGGGATTT
TTTTCAAGTCTTGTCAGAATATAGAAGCCATGATCTATATTGGGCATTGATCAGTTTGTT
ATGTCTATTGTCTTTGGAACTGCAGTCGATGTCATTATCTCTGAGTGGATGGGCTACTAT
CTCTTGAGAGAGTCCATGTTTGATTCCGTCATATGCACACGGGACCGTTGGTTGAATCCA
GGTGGTGTTATGTCAGTAAACAGAAACATTTTTTAATTCTAAGTTTGCTAAGTAACTTGT
ATTGTACTTGTTTGGAATTTTTTTACACAGAACTGTGACTGTTATATGCAGCCTGATCAA
CTAATCTTTAAATGAAGTTAAATTGACAAACACATGATCATAAATTTTGTTTTTGAAAGA
TGGCAATACCCTTTCTGATTTTGTTGTTTGCACAATCAAAACACAGATGTTTTCTTCTCA
GTTTGATCTCTTGATATGGCAGTAATGCTAGTGAGACTCTTTAACTTCTTAACTTCCTTG
GTTGTTATGTATTAATTGGATAACTCTGAAATAATGGTAACTGAGGCAGCTATTAGCAAT
GTGTTAATTGAGACTCTTTACAGGCAATTGCTTTAACTGACTGTTCATAGCTTGCGTAAT
CTGGTCAATAAAGTTAACACCTATACTTTGCATGGAAACATGAAAAAACATGATATGTTG
AAGCTTGGTGCATGGTCGTATATCACACAAGTGATATAATTGAAAACTTGGTTTGATCAG
GTGAAAGGGGAGCTACATCCTGCTGGATGTGGTTGGAGCTTTTAAATGCGCGAATGCACA
ACTGCATCCTGCTGGAAGGGAAGCGTACTTCGACATCATGAACTGAAGCTCAACATTCTT
TGTAAGTTATGCCCATCTACTGTATTTGTCAATGACAGTTGTTGTCATATAGTCTGTACT
TTGTGGATGTGTAGTAAGCTTTTGTGTGTCAGGAAAAACGAATTTAATGGTAGAGTCCAC
GAATTCTCATAGGAGAAACACCTTGAAGTTAGCAGAACTACAGTAGTAGTAAAATAGTTA
AACAAAGTTCCTTTTTCTTTCTTATTATCTGGCTTGTTGGTTGGAGGTGTGATGGCAACT
ATGTATGTAGTTTGATAGGCCTCATCTTGTACAACAGTTGAAAACAAACAATACCTGAAA
GAAGTATGCAGTTTGACTATGTATGTGATGATCTTACTACCTCAAAATTCTAAATCTTTG
TGGTGCAAGCTCCTGTCCTGATGGACCACTACCAATCAACAATATTACACAGATTCTTGG
TTGTCTGTTTTGTACTCTACTTCTTGTTGCTCATGGAAACTGCTGCTGATACAGGGAGTC
CTCTTTGGCGACACNNNCCACCGGAGAAGCCAGTGCTCTGCAACGCGTGTGAGATAAGAT
GAAGGACAAAAAGTACATTGGATAATTACACACGAGCGTGTCGTCCTGAAGATGCTGAAG
CGGAGACGAAACAACCCAAGAAAAGGAAAAGGCCCATCCGCAGAATGGCAAAGAAAGACC
ATCTTTAGGAACCATTTTGGTAGTATTTTTTGTGCACTTGATAACAGATTTT