morexGenes - Barley RNA-seq Database

Contig contig_160601
Source Contig contig_160601
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_160601 (6786 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_160601

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22370	1	1264 bp	None	Available	Available	None
MLOC_22369	4	2092 bp	MLOC_22369.3	Available	Available	None
MLOC_22371	1	180 bp	AK357530	Not available	Available	None
MLOC_22368	13	2148 bp	MLOC_22368.1	Available	Available	None
CDS Structure of MLOC_22370

CDS Structure of MLOC_22369

CDS Structure of MLOC_22371

CDS Structure of MLOC_22368

Contig Sequence (6786 bp)

>contig_160601 6786 assembly3_WGSMorex_rbca.fasta
AGGATTGGGTTAGATTGCCAACGACGATTNNNNNTCGTCGTAAAGGTTACGACGATTCAG
AAATCATCGTAAAGGTTACGACGATTCAGAAATCGTCGTAAAGGTTACGACGATTTTGAA
CAAAACGCCGCTCCTGTTCATTTGTGACGCTCCGTTTTTGACGCTTGGTTTTTCGTCGTG
AGATCGTCATAAATTAAAAACTGTGACGATGTAGCGATGGAAATATAGCGTCGTGTATTA
GCATATTCCTTGTAGTGTGACCCTCCATTTTGGTCAAATAATCATCATTGGTATCAATTG
TTGACTTTTTTTGACCAAATTTAGAGGGTCAACAGTTGGCCGTCAAGAATGAACAAACAT
GACATTTTTAAGATTTTGGTCAAGTATTCTTTGACCAAAAGAAATAGGTCACAAAATCTT
TGACCAAAAATTTTGGTCATTACTTGTGTACTTGAACCATGCAGGAGCTGACATGGCGGA
TCACTGGTGACTGGAAAATAAGGTCACAATTTTACTAGCCCTGGCCCAACAAATTTTGTG
TTGCGTTCATAAACCAATATTTGATATTTCATTCCATTACTATTTTTTATTTATGGTGAG
GTCTTATTATTGCACGGTTTTGGTACATAAAGCATTGTAGATAATTCCAACGATAGAACA
TTATGATAAATAGTTCCATTCATTTCAGCACATCATGGAAGATACTTTACAAACATGCAT
CACATAAAATAGTTTAGCTTTCAACTCCACTACAAATCCAACAAGTGTTGGTACTATACG
ACCAATACAACCACTATCGCTTCAATGGAACACATTAAAAAACATAAAATTAAATTGTTC
ACATGTAACAGCAAATTGAGAAACCATAGCATCGTCCGTCTTCGAGTTTCCAATTCTTTT
GAGTAGCCAATTCTGGATTGAGGAACTTCCTGACATTAAAAGGAACACAAATGAGAAGAA
CATAATGGCCAGAAGGTTGTGGTTTACATGCCTATTATCAAATAAAGAAATGTCATTTGA
TGTGGTTAAATATTATTCAATACGGTTCAATTCACATACTGATGCAACAAATATAGCTAT
ACTTTGTAAGAATATTCTCAGGAAAATGAAGCCATGTGCAGTTAGTATATAGCGATATTG
ACCCAGGAAATATTCTTACAAGATGGCTACACCTTTGTATCTATCCTTGGAAGCAGCTAG
TCATCCATGTACCTCATATGCGTAATGTACATGCAACGATATTACAAGATGAATACATTA
GCATCATATCAAATGGTAAAATCATTTAAAATTAAATGTGTTTGAAACTTTTGAGTGCAT
AATACAAAATTTCACTGAATCAAAACGATACAAGTTATGACAGGAAGAAACTCAAAGCTA
TGTAAAAATGTCCAGTTAGTTCACACATGCAAACAATACTTTCACTCAGCAATGGAACAA
CAAAGGACCATCTTTTTTGTACCGCTCATACAAAACAACTTAGTTGGAGCAAAAAATGAT
ACTAATAAAAAAAATGGAAGAACGTAAGCAACCAAACCAGCACACATTAAACGTTTTTCT
CAATTGTAATAAACAACTCAGCACTGACAACTAGATCAATACACATGTTAATTCGTTTTA
CTAGATTCTTTTAATCCCAACATACTGACTTCCTAACTGGAAGTGTTGCCTCAAAAGGTT
AACAGATTCAAGCCAACGTATACAGATAACCATCTCAACATAAGAACTTTTAAAAGCTCA
TACTGTTAGCACTATGGATGAACTCAATATAGAGAGCTTAAACAAAACCAAACGAACAAG
CAACATATATACCACCCCATGAAGAACACTCACATCAATATTTACTTACAGAACAGAATG
GGGAAGGAAGAGCATTACTACCTGGACATGATCTCAGAAGTAACTTACCACCTAGACAGT
GCAAACTATATCTGGAATAAGAAAACTAACATGTCAACAAATGTGAGATTGAATTTCACA
CTGCCAGATAAAAAACAAGACCGAGGCAGTACATGGATGGATGTGAATCCATGGAAATGG
AAAGAAATTTTGTCCAAGGGGGTAGGGCGCATAATAGCACGTTTTAGAAGTTGTTGTCCT
TCCATGGAGGCTTTTGCATATCACCATGATGTAGTCGCAATATACATCCACCTATAATAC
ATGAAAAAATTAGAACCTATTTCAGGCATGGTATTATCATTGGAAACTAAAAGTTGCTTG
AAAATTTGAAAGAATGCAAGATAAATAATTTAACCTATTATATACTAAAAGTAAAATACG
CGTCAATATTAGAGAAATTTCCTAGACTAGACCTGAAACGTCCTGGACTAGAACTCCTAA
TTCTTTTTTTAATTCAACCAATCTTTTATATTTATTCAAAGTAGGGAGGGATTTCTGCGG
ACAAAAGATGCAAAATACAGTCCGGGAGATTCAATCTTGGATTAGGACTCTTCATTCCTA
AGCGATACAAAGGAGCATGCGCTACTATTATAAAAAAAGGAGCTGTGGCTACTGCAATAA
AATGATGATTAAAAAGCGATATAGGGGAAGTTTCTTATTTCCGCCGTGGGTTTGAGAAAT
AAGATACAGACTACATCTTTTTTCCTGAGAATATTTCTTCATCATGGAGAAAGAATTAAA
AGGCATGTTCGCTAACTCCATCTATCATGGCCAATGAAATAATAGTGTGCTACAAGATAT
AGTGCCCCCCTTCTCTCATGCTACAGAAGTTATAGCATGCGACTAGCATGCCGCATGCTG
TATTTTGAAATAGTGGCTTGAAATATCACATAATCCAAGGATTTCAGGAGCTATGACATG
GGTAGCGCCGAAGCAGCCAAAATTGCACACATGTAGCTTTCCCCTACATACGCTATAGCG
TAAAAATAGTGTGCTATTTTTTGGTTGAGCGTGACTATTGAACATCCCCTGTTGTTATCG
TCTGTTTCCTGCCCCATACATATTTAGTTGTGCCAGACAAAAATGGAAGTCAAAGTGATA
ATCTGATTTGCTGGGGTCACAACAAAGGAGCAGGTGTTGCTGTTATAAAAAGAGAGCAAT
GACAGCTACAAGGGAACTTTCTCAATTATTTCTCCCACATGTTTGAGAAACAAGATATGT
ACAGCCCAATACATAAGTACTTTGCTTTGGTGAACTGCTAATTTAACATATGAATCCTCT
AGATATGCAACCATATATAAGTGATAAGACACGATGTGAATCAACACATTAGCAGAATTT
CATGGCCAAATATTTTGTCAAAAAAAATATCCGACCTTTTATATACACTTCCACCTGACA
TGTGAACTGTAAAGCATAACTGATTCTGACAAAATGTAGAATTAGTTTAGGTTCAGAAAT
GTAAACCAAGTACCACATGTACACAACCCTAAATATATCAAGCAGACCATGGGATCGGAT
GGGAGAAGGACCGGCTCGAGCGGATGCTCATCAAGCACCCCCAGCACGTATTAAGACATT
TTGATAGACCTCGTGGAGTATTTACATCTGCTACTACTCCCTCTGTAAAGAAATATAAGA
GCTTTTAGATCAGTAAAGTTGTGATCTAAACGCTCTTATATTTCTTTACGGAGCGAGTTC
TAGCAAGCAACCGGCCTGTCCTGGTACAATGCCAGACTGGTCTTATTATGTGCCGATAAT
TACTGAAAGGGCCAAGAAAATCTTCCTTCCTCTTTCCTCTTTCAAGGTTGGTTAAGACGG
GGAATATGATTCAAAGTATCTACATGTTGTCACCATTTCCAATTAAAATAATTATTGTTT
CTTCGCAAAGAGAGGAAACTGTGTGCGTGCTTTGCGGCATCATCATAAAGCACTGCCCAA
TTCACTTCTAAGGAGCATTGTTGACTGAATGGTAAGATTTTGAAGCTAGCTCAGCAAATG
CAACTTATTTCGAGAAAGAAAAAAAGTAGTAAAATAATGATTGATGAAGGAAAATATGGT
TTGTTGGAAATATGTTGTTCACACAAATGTAGTGATCACGTGACATAACACAGTATATAC
ATGAGAACGAGGACATAGGATTTTTGGATTGGAGAACAATGAGAGAGTGAAAGAAAAATA
AAACTACACGTGTGAGTGTTTTCGAACATAGATAACAACCATGAGGGTGTGTACCCAATT
TTTTTATACTCGGAATATTTTTGAATTAATCTATTAGTAAGACCAATCAAACTAACTTTG
GTGAAAAATAACTACACTACAGAATCAGTACGCATAATTGAGTTATGTATCTAAAAGCAT
GTACAAATACAACATCGTGTTCCAGTATGACAATATTTGAAATGCTGAGTTGTTTGCATG
TTCATACTATTTGAGCATGTGAGCATAGAATGTAGTTTTCGCCACTAAGGAACTAAATCT
AACAAGTACAGTAACGGACTGGTGGATGGAATGTTGTATTGCAATATACAACCAGCCACT
TACCATTCAAGAAATTAAATCAGGGCGTGAAGACACCTTTCTTCAGAAGATTTTTACCTG
CTTTTGACAGAAGACCCTTTTGATGCAACAAACGGGGACTCAGAAAATTTCAGAAATACT
ATAGTTATTTGATTCCCCCCGCCAGATCTGTCCTCCGTACTGCAAGAGATGGTAATTGAT
ATAAGAATTAGTCTACGCTTACCTCCAGATTCAGGACAGGAAATTTAGAACGCTGATCAA
ACTCACGCAAGCGGATGGATTGAAGTAGATCACGTACATGAAGAATCATCTCCGGCGAGG
CGACCGTGTCTTGCTTGCTCTCCGCGTCGTTGTCGTCGGCCGTCGGGCAGCCTCTGTAAA
AGAACCTCCCGTAGTAATCTTACTACAAACTCTTGGAATCACAACTATTGTAATCATACT
GCAAAGTGAAATGAGTCCCAGATTGAACTATGCTTGAGTGATATGGCAATAATAGCTTTG
TGGACAAGAGAGAAAATGGCATTACTCGTTGAGGCACATCCTGCCAGTAGACCAGCTCTT
GGATCCTCACCCAGCCTACAACCACGCAGTCTGTGGACATGAAGTAACACGAAGCTTTGT
GAGCAGTGCACCAATGACGACCGAATGAGGAAGACGATTCATGCAGAAGAGTAAGAGGAT
GAGGAGGGACTAACCAAGGAGGCGCGAGGCCAGGTAGTGTGTTGACCCCGTCGAAGAAGA
CATGGATCTCCTGGTAGAAGCCCTCCATGGCAGTGACGGCGGGGTCGAAGATGTTGGGTG
ATGCGTGGTTCCAGAGGAGGCTAGTCACTCGAGACGAGCTCGAGAGGTCCTCCATGCCAT
TGAGGACCCAACCGCCTGTGGGTTGGACGAGAAGGACGCCAGCCGGTACCGACTCAAGTA
GGATTCAGTGTGGATCTTGTTGCACCGTAGATGAATAGGATTACCTCTTCCGGCCGGCCA
CCGGCGGATCTGGAAGAACTGAATCGACTAGATCTGACGGTGTTCACATGGAGAGGGACA
GGATGGCAGGGGTGATGAACGTGAGGCGAGGTAGGTAGCCGGCGACGTTGTGTCGAACAG
AGGCCGTGGGTGGGGGAGACGGCAGGCAGTGGATGTGGTCTCGTGGCGGCGGCGGTGAGG
ATGCTAGAGAGGAGACGACTGGGCCTCGTGGTGGAGGCTGCGGTGAGGATGGGGGAGATG
ACCGGGTGTTTGTTCGACTGCAAGGGTTATGCGGTGGGATTAAATCACACTTTTATTTTT
ACTTGGTATGTGCCGGCGGGATCAAAAAATTGAAGAAAACACGAGGAAACGCATGGCGGG
AATTGAAATATAGACCGCTCGCCCAGTGACAGTGATAACAAAATCATATAGTAAATCCTG
CTATTACATCCAGGGTTATTAAAACTAATAAAAAATATTTCAAACTTTTTTTTCGCAAGC
ATATGCATATATAGAGTGAGACTTCAATAATATTTGTGGAATTTGATTACAACAAAATTA
CTTCAATCAATTTTATTTGATACTAATATTTAATTTGTGTGAAAATAGGTCATGTTAATT
GAATTCTGAACCAACAAAACAATACTACGACCACAAAGTAACACTGACTCATATCTTGTC
TATTAACAATGACCACAAAAGATACCCTTTTCTAAAGAGAAGGAGAGTTTTATAGGAACC
ATAGTCGCATTAAATTTTTAAGTATTTTATGCCATAGCAGACATGAGAACCCCAGAAAAA
TTAAAAATATAACAAAATAGCCTTCCAAAATGTATTCCCTCTGGTCTTGTTTCTTTGCAC
ATTATTTACTTTCTCCCTCCATAGTTTGATCATTGGGTGATTTTACTGTCTACTTCCACC
TTTACGCCACCGTATACTTTGTTAGTAATACTAGTAAAAATGCCCATGCGTTGCACCGGG
AAAAAATCATCACACCCTTTAACCATCGCCTGTTACACGAGTGCGTTGCACCGGGCAAAG
AAAGAGGCGCAACCAGCTTTATATTGCATTGTGTATCATTTTAATAGACATCAATAACAA
GGTAAAACTGATTATTGCTTTTTGTATAATCAAGTTTGGACGTGAAGAACCCAACTTAAC
CCGTGGGCAGCGCCGGTTCCCCGCCATGGACTTCAAACTGTAGTGCGGGTTGAATAACAA
AAATGATACCTTACTATCCGTTGTACTATCAGATGTTCCTGATTCAGCAGACAAAGTCTG
ATCGGTGGTATTAGTCTCTAGTGCTACGTTCTTCTTTGGAACTTCAACCCATTCAGTTAT
CTCAATCACTGCTTCTGCCCTATCAAGAAAAATAATTCCTCTTCTACTCAAAGAAAAATG
TAGATT