morexGenes - Barley RNA-seq Database

Contig contig_1605752

Source Contig contig_1605752

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1605752 (928 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1605752

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22352	2	577 bp	MLOC_22352.1	Available	Available	LOC_Os07g04850.3, FRAME:+1, EVALUE:1e-44, 13107.m09971 protein pre-mRNA-processing factor 31, putative, expressed

CDS Structure of MLOC_22352

Contig Sequence (928 bp)

>contig_1605752 928 assembly3_WGSMorex_rbca.fasta
GCAAGCCAGTGGAAGAAGCGCACCCATGGTGGCGCCCAACACTTCAATGTTAGCCTCCAT
GCTTGACAATGGGTGGAGCCATGGAAGGTGGCCCGTCCTTGCAGGCTTATAGCTGCAAAG
TCAACTCTAGCAGCAAGAATCGATTCAATAAGAAGTGATCCAACAAGAAAAGCTGGTCGC
AACTTGTTAGAAGAAGTTCGTAAGAAGATTGAGAAGTGGCAAGAACCACCTCCTGCAAAG
CTTCCAAAACCACTTCCTGTTCCAGACTCCAAGCCTAAAAAGAAGAGAGGGTGTCTCCGC
CTTTGAAAAATGAAAGAAAGGTAAGCTTTTCTCAACTTTTTTTTTTGCAAAGAAAACATA
TTGAACAGCCGTATGCCCGTATGCTTATTTATTTTTTCTTGAACTACTTATTTGCATTCT
GTGCTGAAACTTGATTCATCACATATACAGCATGGTATCTTGTCATGACCTCGGGAACTT
GGTTCTGCAGATATGTGGTAAACGATATGATGAAGCTTGCAAACTGAATGCAATTCGGTA
TACCAGAGGAGAGCCCATTAGGTCAGTTGGTTTAGACAGTATGATTGGAATAACATTTTG
CTAGTTAGTTTAGCTACACTATACTTTAATATTGACATGATCACATTTTGTTATCACCAG
GTGATGGTTTGGGGGAAGGTTATGGCATGCTTGGGCAGGCCGGGAATGGGAGGCTACGTG
TCTCAGCTGCGCAGAACAAACTTGCTGCTAAAGTGGCAAAAAAGTATGCCTTCTTTATTC
TTCCCACAACAACAACAACAACAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAGTTGAAACCCATAAGATCTCGAAGCCAAGTCATGGCTCTGGAATTCGTATAACT
TTGTATTATGTAAGCCATAAGAAGTTAT