Map Locations of contig_160554 (4174 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_160554

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_22334 4 1467 bp AK355389 Available Available None





CDS Structure of MLOC_22334






Contig Sequence (4174 bp)

>contig_160554 4174 assembly3_WGSMorex_rbca.fasta
CTAGAGTTGAAACCCATAAGATCCCGAAGCCAAGTCATGGCTCTGGAACNNNNNNNNNNN
NNNNNNNNNNNNNCCTGTCCATGGCTAAGTCTTTGTCGATTTCTTGTCCAAACACGTGAA
ATTTGGCACCTGATATTGGAGTGTGTAGTGTGCAATGTGCCGATGTTTTCTGACCCATCA
TGTTCATTGCATCTTTGGATCGAAATCGGATGATGACTCAATTTGTTAGGATAGACTTAT
CCTGGCAGTGTTTGCTCAGGTCTAACACGAGAAACCATTGTGGCTTTTCTTGACAGTGGA
ATCGTCGCTACGGTGTTTGGAGCTACTGGATTTCTTGGACGCTATGTCGTTCAACAACTT
GGTGAGATGATAAGACTTGTGCTATATCGAATTAGTTGTCACAAATGTGCTATATCGAAT
TATGTAGAGAGAGTGCCAGGGTGGTTTAGAAGGATTACTCAAAAAATGTTATTTTTATTC
AGCGAAGATGGGATCTCAGGTTCTTGTCCCATTCAGAGGTTGTGAGGATTCTCACCGCCA
CCTGAAGCTAATGGGTGACTTGGGTCAGGTACAAGAACTGTTAACAAATAGTGTTCATCA
TTAACCCCATTTCCTCTTTCCCTCTTATGTATTTCCATCTTTCTGGCAGATTGTTCCAAT
GAACTACAACCCAAGAGATGTGAATTCGATTAAGACTGCCGTGGCCAAGTCAAACGTGGT
CATTAACCTCATTGGTATTTTTTCTTGAGACACATTACATTCATATTCATATCTCGTTCT
GCTTATATCGGCTCGATTTCGACAGGACGGGAGTATGAAACAAGAAACTATGGGTTTGAA
GAAGTAAACCATCAGATGGCTGAACAACTTGCAATGGTATGTCTTGTGTACACATCCAGT
TTTCTTCCTGCTGCATGCTTGATATCCAACTATGTAGACTATTGCTGCAAGGGCCATTGA
GTATTAGGAGTAGATCCCTTCCAAGTTCCAACCAAGGAACTAACTTGAGTTCTTGTCCTC
CATACTCTGGCCCACATATCGTCGGCCTGAGATCTCATTCTTAGACAAGGCAATCCTTCT
GCTGGTTTGTTGCATGTGAGGGCTACCTTTAGCTTGGCATAATGAATCATAGCTGTTATT
CCAAACTGTACATGTTCAGATTGATCTTGGCTAGGTTTCATCCAGCGGTTGCTCCAGAGC
ACAAGATAGTCTAGATTGCTACTCTGGCATGTGGTCTGGCAAAGGATATTATGTTAAACT
TTCTGTAACATGTGGTCTCACATTAATAATTTTATATAGCGACCAGCTACTAACAGGTTC
TGAATTTTACGCAGATATCCAAGGAGCATGGGGGTATCGTGAGATTTATCCAGGTTTCTG
CTTTGGGAGCATCAGCCTCTTCACCTTCTAGATTGCTTAGGGCAAAGGCTGCTGGAGAGG
AATCTGTGTTGAAAGAATTTCCTGAAGTAATAACCTTTTCTCAACTTTGATAACTATAGT
TGGCAATGATAATTCTTGTTTCTGTACTACCAGAAGTCGGCAGTTCAATATTTTCCATTT
ACATAGTCAATGACTGCAATGCAAATTTTGTCTTTATCCATCAACAGGCTACAATTATGA
GGCCTGCAACCCTGATTGGCACAGAAGACCGGATTTTGAACAGATGGGCAATGTATGCCA
AAAATTGGGGTTTCCTCCCACTTTTTGGCGGTGGGTCTACAAAGTAATGAGTTAGCATCT
TCACTTCTACCATATTTCCTTGGCTTTAAAATTTAGCCTAGAGCATGAAATGCTCATGTA
GATATCTTAGATGCTTTCATCAGCAGCTCAATTACTTGATGCAACATTTTGCAGGTTTCA
GCCTGTTTATGTTGTGGATGTTGCGGCTGCCATTGTCAACTCCCTCAAGGATGATGGCAC
CAGCATGGGAAAGACCTATGAGCTTGGTGGACCGGATGTTTACACTGTTCATGATCTGGT
AATTATCAAACGACAACTGCTATGCAATGCAACAATAAATACCAAGATTTTATACGCAAA
GATGATGATTTTGTTGGATGTCACAGGCTGAAATGATGTATGAAACAATTCGCGAATATC
CAAGATACGTGAATCTTCCTTTTCCTATCGCAAAGGTACGTATATAAGTAGCAGCGCCCT
TAGGTTAAGAGAACCTGAGGATGGGGCGGCCTATATATTGACTTCTTGATTTGCAGGCTA
TGGCTTCTCCAAGGGAAATGCTGCTAAACAAAGTGCCTTTTCCTCTGCCAACCCCCTCCA
TTTTCAACCTTGATCAGATCAAGGCACTCTCCGTAGACAACCTAGTATCTGAAAATGGTA
AGTGATACAACGGGCTCGTCCGTCGTCACTTGTGTTATTGTTGGCTCACATTGTTTCCTG
AAACTTGGTGCAGCTCTCACTTTTGCGGACCTGGAAATCAAGCCTCACAAGTTGAAGGGC
TACCCTACCGAGTTCCTTGTCTGCTACAGGAAAGGCGGGCCGTCTTTTGGTTCTACCGTC
AGCGAGAAGATGGGGAGCGAGGATGTGGCCCCCCGGTTCTAAAGACGCTGTAGAATTAAT
GGTCATTTAGTTTTGAAGATAAAATTGTTCTTGTGTTCTGTTTTCTTGCCATCTGCCGCT
GATGCCAGACGCCTCACCCCTGGGCAGGACCAGATTTGATGCAAACTTTGGCCCCCGCCG
TCGCCCTTTTTTCCCATATCAATAAGAAAATGCACGATCGATGTATTGTGAACTTTCTTG
AGTTGGAAATGCAAAGTAAATCAGATCGTTGCAAGGGTGTCAACAATTGCAGAATATAAA
TTGCGTTGCTCATGTGGCTGAGCAAGTAAAATCGTTTCAAATTGTTTTTGAAATGTTTTG
TTTGCTGCTGAATGTTCTAGATTTTTTGGATAATTTAGATCAAGGTCAAATATCTAGTAG
ACCTTGATCTTGATCCCACTTTTTAAAGAGATTTCACTATGGACTAAAGTGTGTCTATAT
ACATCTGTATATAGTCTGTATTGAAATATCTAAAAAAAAAATTAGGAACGGAGGAAGTAG
ATATCATCTTTACCACTAGTCCCGGCCACAGGTGGCAAAATTCATTGTTTTGACCTTTTT
AGTAAAACTAGTTAAATGCGTGTGCGTTGCCACGACATACAAAATATTATATAAAAAGAT
TACTTGACAAATTGATAGTATGAACTTTGGATATTTTAGACGAGTGTCGTTTTATTGAAT
ATCATGTTCATGGGCACGGCGGCCCATCGTTTTATTGAATACCTGTTCGTGGGCACGGCG
GCCCATCGTTTTATTGAATACCTGTTCGTGGGCACTGCGGCCCATCGGCCCGGAGCTCCT
TTCGGCTGTTGCACGCGGCATAGCCATCAGAGCTAGCTAGCTCACATGTGTACCATGGCT
AGACGGAGCTAAACAACTCATGCGATCGCGTCCGAACGGAGCTAGCTAGCTCACACAGCA
GCCCAAGCTAAGTCACTCGCCGGTGCATTAATTGATGCATGTCACGACAACTTGTCGTTG
CCCGCCGCTGCTACTGCATGCCGCCTCTCATCGCTACTCCCTCCCATGCTTGAGCTGCTC
CCACCCACTGATGCTGGAGGGTGCCCGACCCATTTCGGAGCTGCTGTTGGAGGGCCGCCG
CAGCCATGGCGGGTGGCGCCATGCCCGGCCAGCTCCCCATGGCCTGGAGGCGGCGCTCCC
CATGGCTTGGTGGTGGCCGACCCTGGTCTGTGGTGCAACCATGGCCTAGTGGTGCCGGCG
GCGGCCATCGCGTGGTGCTAGCTCGGGGGAGGAGAGCGGTCATGGAAGAAAAGGGAGAGA
GAGCACAATTACATGTGGGACCTCACATGTAAGTTTATGGTCAAACAAATGGTCAACAAA
CGGTTTGTTTAGGAGCGGTCCCAAATTGTTATAAACCGCATTAATTTTAAATTACATCGT
CATTTGGTTTTTTTGAAACAGCGTACCACTTTTGTGGTAGTTTTTTGAATGATTAAAAAG
TGATAGTTTTTCATGATCAACGTTTGTAATGTGGTAGTTTTTTGCTATATACTCCAAAAA
CTTTGACCCGTTTGGTCAGGTACGAGACAAACCATCTTTTTCCCACCTACACAAACTTAA
AAAAAAAGAACTTATCCTCACCGTACAACCACTC