morexGenes - Barley RNA-seq Database

Contig contig_160451
Source Contig contig_160451
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_160451 (7166 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_160451

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22257	1	1870 bp	AK357750	Not available	Available	None
MLOC_22256	4	4207 bp	MLOC_22256.3	Available	Available	LOC_Os04g52200.1, FRAME:+1, EVALUE:0.0, 13104.m05346 protein RNA recognition motif containing protein, putative, expressed
CDS Structure of MLOC_22257

CDS Structure of MLOC_22256

Contig Sequence (7166 bp)

>contig_160451 7166 assembly3_WGSMorex_rbca.fasta
TAGAATGTATCCTATAGGAAGTTATAGCGAAACGGTGCCCCAGTTTTAGAAATCATTGGA
CGGGGGGTTAGATGGAGTAAGATCCGACGGACGAGGAAGCGGTGGACAGTTTATTTGGAT
CCGCCGATGGAAGGTAAGAGTTTCCCTAATCAAAATCTATTAACATGGATCTAGTTTTGA
GATCTCGAAGCAAAAGAAAATCAACTGGGTGAATAATATGGAATTTGGACGCACGGTTCA
AGAATAAAACGGTATAATAAAAAACAAATATAGGGAAAAAAAGGAAGTCCTTGGCCCGAA
CACGGTGTCTTAAACGTTTTCACACGGCCCAGTCCCATCTCGCGCAAGGCCTTGGCCCGA
CACGGTGAGACCTCCTGCCCTGCCCTATCGCCGCCGCCGGCCGCCATTGCCAGTAAACCT
TCAACCGGTGACTCCCACCGCCCCCAAAGGCCAAAACCTACTCGCCCTACCGCCTCATCC
CCGAACCCTACTACCACCCCGGTCTCCGTCGCCCCCACCGCAGCAGCACGGGAACCTCGC
CGCGGACGCCATGTGAGCGCCCGCCTTTTAGCGCCAGCTGCGCAGCCGGCCGAACTGCTC
CGCCGCGTCTCGCTTCTGCGTTACCTCTTGGTGCTTGATTTGACATGGCTGATGCTGCGC
AGGTCGTCGCGGCTGTGCGTGAAGAATCTGCCCAAGGGCGCCGACGAGAAGCGGCTGCGG
GAGGTGTTCTCGCGGAAGGGCGAGGTGACGGACGCCAAAGTCATCCGAACCAAGTAAGCG
CCTGGGGTTGATCTCCCCTTGCTGCTTCTGTGCCAATTTAACCATATTATGTGTTCATGT
GCATCGACGACCGGATGGTCAGAATCGAACCGCTAGATTTGTGTCCCCTTTTACGGGACA
CATGGTATTCCTCCGGAAGCATAAGATGAGCTGATGAAAAGGCAGCAGGGAAAACGATAG
CTTCAATCGGGCAAGAGAGTCAACATTTCACTTCTACTATACTTGTTTCCTGCATCTTCA
AACCTGGCCTGGCTCTTCCATTGCACTTCATCACTCTGTAATGTGCAGGCACAGTGAAAC
CTGACTTGAACCACACCACATGTAGCTATCTGTATGAAGTAATTAAATTGCATTTTTAGC
ATGAAGTCTACAAGTAAATCGATTCGTTTTGTGTGTTTATAGGGATGGAAAGAGCAGGCA
TCTTGCATTTATTGGTTTCAGAACCAATGAAGAGGCAGCGGAGGCCCTCAACTATTTCAA
CAATACATACATTGACACTTCTAAGATCACCTGTGAGGTACTTTACTTTCTAAATGGGTT
TCAACCTTTTTTCTCTTTTGTACGTGTATATTGGATGCACTGCTATAGCTTGTAGACGAT
TCAGTGATACCCTGGTGGGTTGAGATGGGGTGAATAAACATGTCTTATGAATAATCTGGT
GTCTGACAGATTGCTCGGAAGATTGGTGACCCTGATGCTCCTCGCCCTTGGAGTCGCCAT
TCTTTAAAAAAGCCAGAATATAATGCTAAAGACAAGACTAACAGTGGCGATGTTAATGCA
CCGCTGAAGAGTTCCAAGAGCCAAGGAAAGTCTGCTGTTGTTGGAGCTTCTAAAGGCACC
ATAGCTAATGATCCCAAGTTCCAAGAGTTTCTTCAAGTTATGCAACCCCGATCTAAAGCA
AAGATGTGGGCAAATGATACAACGGGTACCCTTGACGATGCTGCCAAAGATAGCATGGTA
GCTACTGGATCTAAAAAGTCGCAGAAGAGTGAAAATGATTCATCGTCTGAAAATGATTCA
TCTTCCGACGATGATTTTGAGGAGAAAATAACAAATGATTTGCCCTCACAAGATCCTTCA
GAGAAGCTGCAAACTGAAAGTAAATGTGACAACAATATGACAGATATGGACTTCTTCAAG
AGTAAAATTAGAAAAGATTGGTCTGATTCTGAATCTGATGATGAAGATTCTGGTGATCAG
TTGAGCAACAACACTGATGATGAAGAGCCATCTGATGAATTGCTTGACGCAAATGAAAAG
GGTCCGATGGTGGATCAGAAGGGTAATCTAAACCAGAAAAATTATGAAGATAAGAAAGCG
CCCATGGAAGGTAGTAACACACAAGAGGTGGAAGATTCTGACAACCAAGACGATGAACAT
ATTGACAGCCAACAAGAAGATGAAAATCATGCCAATCAAGAAACAGAAGATGTGGAAGCC
GCTTCATCTACTGATGAAAAGAAGCTGGCACTGGAGACTGGCCGTTTATATATCTGCAAC
CTTCCATATGCAACTACGTATGTTTTTACTTTGTGTCATTACTTCAGATCAGCGTTTATG
TGTATATTCAAGATTTTAGCTCTTTGCCTTTTCTTACAAGAATATTGTCGCTTGTGGTTT
CAGTGAAGAGGATCTGGTTCAGCTATGCAGCCAGTATGGCGATGTTGAACATGCACATAT
TGTCGTCGATAAAACCACTAAGCTCTCAACAGGCAGAGGTTACGTGCTTTTTAGCCTTCC
AGACTCAGCAGTCAGGTAAATATTTGGCTAGCAGCTTTATTATCTCCGATGCAGAAGGAT
AGGCTTATTTATTTTTTGACAGTTCAGCTTACAGGAGATTGTTTAATCCTTCACTGTGCA
GACTTACTTTCCTCCATGCATATTTGCATGATGCATGACAGCTTGATATGTGGTTTGCAG
GGCACTTGATGAATTAGACAACTTAAGTTTTCAGGGGCGACTGCTACGTGTTAAGGCTGC
TAAACCACTTAATAATAAGACATTTGAGTAAGAAAAGAAGTTCCTTTTGTGCTGTTTCCT
TTCTTTGGTTGGCTGTGCAAATAATGTGCTATTCATTTACTCTTAAATTGTCAAGGTCTA
GTCATTTTGCTGTTGACGAGAAAATGAATCTCAAGCAGAGAAGGTTGGAACAAAAGAAAA
CTTCTGAAATTGGTGGGGATACAAGAGCATGGAACAGCTTTTATATGCGTCAAGATACTG
TATGGTTATCTTCTAGCCTTGACATTGAGTACTAGTTTTTGTTTGTGCCAACTCAACATG
CTGTTTATGTTTTTGTTGAGACAATTGTCGTTTATGTACTTACGTTGAGAAAATATTGTT
GCAACTCACATGATATTGTTGTCAAACATTTCCGTGCTGTCCCTTTTTGAACAATCCTCT
TATCTTTCATGTCAACTGATTGAAGCAATTACGTTTGTGTTTAGGTCGTTGAAAACATAG
CAAGGAAGAATGGTATAAGTAAGAGTGAATTACTTCATAGGGAAGCGGATGACCTTGCTG
TTCGTATTGCTCTTGGTGAGACACATGTCATTGCGGAGACCAAAAAATATCTATCTAGGT
CTGGAGTTAATGTTGATGCCTTGGAAGAACATACTTCCAAAAGAAACGAGAAGTTGAAAC
GAAGCAACCATGTGATATTGGTAAAAAACTTGCCATATAGTTCTTCTGAAGAAGATCTTG
CTGCGATGTTTCAGAAACATGGAAGTTTGGATAAAATCATTCTCCCACCGACGAGAGTAT
TTGCCTTGGTATGTTCTACATTTTACTTGTGTTGTTCCACTGTTTGTTGTCATAGTGATC
GTGACATTGCCTTTTGGAACTATTTATGGGTGTATATCATTCGCTCTTAGGATTGCAAGT
TTGCTTTGCCACTTGAGCTGATAATGCCCCTCTTCACTTATTGTATTTTTTTCTGAGTTA
TTTCTTTTGGTATCTCAGGTAGTCTTCGTTGAAGCAACTGAGGCTCGTCATGCTTTCAAA
AAATTGCTATACACACGATACAAGTAAGTTTCTGCAGTGGTGCTAGTTAATTCATTCTTA
ATTAAAAATATTCCAGCTCACAAAGTTGCTCTCTGTGTTAGTTACTGAATTGGGATCGGG
TTCCATAATGTAATTTTCTTTGTTCAAGTAAAGTAATGCAATGAATGGTATCTGACCTTC
AATTAGGGAGGTTCTCTATAGTTTGTATATTCTTAAAAACTCATATAGATACCAGAGGCT
GTAATTCTGCTATGGAGATATTTTAAGCGACTCTGCATCCTTCCATTTTAGTGTTGTTTA
GTTTTGTTTACACATCGTATCTTCTGAAATTTCTGTCAATTTTTTTAACGATAGCTCTTA
GCTTGGTTTATACGGGAAATCTACACTTCTGTATTTTATAAGAATCTTGCTTTTGGATTG
TAGGGACACTCCACTGTATTTGGAATGGGCACCTGACAATATTTTATCTCCTACCTCAAC
AACCGTGGAAGAAGACGAAACAAATACCGCTGGCGAGAGGATTATTGCAAAAGCTATTGT
AGATCAAACAAAGGAAGGAGTTAGTGCTGAAGACATTGATCCTGATAGAGTGGAGGTTTG
CAGCTTTCTCTAACTCCTGCTTTCTTGTTTGTTATGACTCATGAGGAGCATTTGTTACAC
TTGGCCTTCTCCATTGTACAGATTATGAACAGAACAGTTATGTATTTTCTTTTGGTTACC
CCGATTATACTTGGGCTATTACAATCTTAGTAATGTACCATTATTCATTGCAGTCCCGAT
CTGTATTCGTCAAGAATTTGAATTTCAAGACTACAGATGAATCGTTAAAGCAGCATTTCA
GTACAAAATTGAAGACTGGCAGCCTTAAAAGTGCAACGGTATGGACATGCTTATGAATAT
CAAATGCATCCTTTTTTCGAGAAAACGCAAAAGATTATGGGTGTGCCACTATCTTAATTC
TTTACCCATCCTTTTTCTGAGTCACTGTTTAGGTGAAAAAACATATTAAGAAAGGCAAGA
ATGTTTCAATGGGATTTGGCTTCGCTGAGTTTGATTCGGTTGAAACTGCAACCAGTGTGT
GCAAGGACCTACAGGTATCCTCCATTTGACCTGCCTGCCAGGGTTCTCCTCCCATCTGTT
TTTTTTTTTGTTCACATCATAATGTGCTCATATAGATATGCAGCATGCTAAATGAACTGC
GTGTTAATAGGGAACGATTTTGGATGGGCATGCTCTGATCTTACAACTATGCCATGGGAG
AAAGGATGGTCAAACTGCGAAGAAAAATGAGAAGGATAAGAGTTCAACCAAACTGCTTGT
GCGAAATGTAGCATTTGAGGCAACTGAAAAGGACCTGAGGCAATTATTTAGTCCATTTGG
CCAGGTGAATGTCCTCCTTTTGTTGTTGAAATCTATTTGAAAACGCAGATGAAGACCAAG
AACAGTCTCTAGGGATTTGGATTCAATTGCACTGAAAATTGCAATAATAATATCATCATG
AAGAAAATTTGAACTCCTCACAACAAGTATTTAAACATAATTGGATTTTACTTTTTGACC
GACCCAATAAAGAGTCCATGGCTTCTGGGTGGATGAAAATGCTATATTCTTCCTGATATC
TAATGAGTTTATGTTGATGAAAACAATTTCAGATCAAAACCCTCAGGCTGCCTATGAAGT
TTGGAAGCCACAGAGGTTTCGCGTTTGTCGAATTCGTCACGAAGCAAGAGGCACAGAACG
CCCTGCAAGCCCTGGCAAGCACTCATCTCTACGGCCGACACCTGGTATGAACCTTTCGCA
CTCAAGATCACACGCCCTATGCTTGACGAACCAGCAGTATGTTGATTCTGTTGCATCCAC
TTCAGGTGATTGAGCGAGCAAAAGAGGGAGAGACGCTTGAAGAACTGCGAGCAAGAACCG
CCGCTCAGTTTGTGGACGAACAGAGTGGTTTCCAGCGGATGTCCAAGAAGAGGAAACAGA
CAAGTCTGGTGGACGAAGGCTCTGTTAAGTTTTCAAGGATAGTAGAATGATAATGTTCTG
GGGGTAAAATACAAGGCAACAAATTTTTGACCATGTAGTATGTGATATGATAGCATCACT
CATCTAAGGCGAGCCTCTTCTATCTTCTCTTGTATTTTTGGGTTAGTGCTGGAGAAAAGA
AACTGCAGCAACTCGTGTGTGGAAAATGAAATACAGTGATCCTAAGAATGCAGTTTACAA
GAAGTGAAAATGATCCAGTTGAAGGCACATTGATGCCACAAAATCTTAAAATACCTAGTA
TTCTGCTTGTTCAGCTCCATAACAAAATCTACACCACCAGAAGCTATTCTTGTCCAGTCT
GCAGTGAACATCCTTATCTCAAATTTTGTACAGCAATGTGCAGATTCATAACTGCTATGT
GCAACCGTATCTGTTTTCGCGTGAAATCTATCTGGCACAGTTCTCTACAAAAGCAACCAG
GAGGAAAATGCAAGAGCCCCTGCCACCCGCGTCAGGTAAAGCTATGAGCAACCTCTTTCA
TACGCGCCATGGTATTATTCACCATTTGTGGGAAATCCATCTTGAAACCCCAGAGCTGTC
TGCAAGTATGAACAATAACATAACAATCAATTAAATCAAGCAAACGACACCAATAATCAG
CACCTGAACTCACAGCCTTGAGAGATTTTGGATGCCAAAACTAGAGTTATACCTGGCCAT
CTATGCTGCCTCGACGGCCTCCTCCCTGAGCGGCCGGTTCTCGCCGCCGGTGCTGCTCTG
GCCCTCCAGAGGCATGTACTGCGACATGATCGCCGCCACTTCCGAGTCCATGTACCGCTG
CACCAGATTTTCATTTTTGCTTCCGTCAGCCAACAAAGATCTAGTACTGCAACGACGATC
TACATTTCGAGACGGAGGAGGCTGCCTCTGACAGCGCTGGTCCTTACCCTGAGCCTGTAC
TTGTAGAAGGCGAAGCCGGCGAGCCCGGCGCCGACGAGGCACGAGAGCACCAGCGCCGTC
ACCAGCCACCCCGTGGCCGCCGCGCTCTTCCCCACGCAGGTGTCCTCGGCCATGACGTAC
ACCTGGTTGCCGCCGCCGCCGCCGCAGCCGCAGTGGTAGCCGCCCCAGGTGTTCCTGCAG
GAGCAGGCCGGGCAGGTGCACGCCACCTTGTCGCTGCACTCGTCCACGTCTGCAATGCAA
TGGCGGCTCCGGCATCAGTCATCCACAGAGAAACTGCAGACGGGAGCAGCAGAAGGAGTT
GAAGGCACCTTGGCAGGTGAGGCCGTCGCCCTTGAAGCCCGGCGGGCACTCGCAGCCGCT
GAGCGACTCGGAGCCCCTGCAGGCGGAGAAGGTCTTGCCGTGCCTCGTCTCCTTCCAGCA
CCCGCCGTTGTTGGCGGCGCACCGGC