morexGenes - Barley RNA-seq Database

Contig contig_160436

Source Contig contig_160436

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_160436 (2056 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_160436

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22241	5	797 bp	MLOC_22241.3	Available	Available	None

CDS Structure of MLOC_22241

Contig Sequence (2056 bp)

>contig_160436 2056 assembly3_WGSMorex_rbca.fasta
GTCGCTGCCGGCATCGACGGGGGCCATGGAGCAGGGGAGTTCAAAAAATTCAGAAGTGTT
TCATAAGATAAATGTTTCTCATTTTAATGAAGTATCTTCCATGGATTTGGTTTATAGCCC
AGACTATATATGTCAATCGATTGCCTGCAAGACTGCAATACCAAATTGCTGATTCTATGT
AAACTTTGGAACCCTTACACGAACTCTTTTGAGAACTTGGATGCAAGTTCAGAGGTACAC
TACTTACGTAAAAAAAAAAACTTTCAGAGTACGTTTGGATAGGAAAAATCTGTTATAGCC
TTGCCAGGCTAGGAGATGTGTTTGGTACAACAAAGTTTTGCGGGCGAGCTAGCATCGGGG
GCAAGAAAAACCTTGTCCGCTTGGGAGAGCTGATTCTGCTAGCTCTTGACGGCAAACATA
TCTCGTAAAATAAAAGCCAATCAGCCAACAGGCAAGGCAAACTCAGCAAAGCCAATCTGG
ACTATTTGGCAAAACCAAATGCTCCCTGCCTCCCTCATAATGTAATTGTAGTTCTTAAAA
TAAGATTTGTTTCAAGATCTGTTCTACTTTGTTTTAGCAGGTGACCACATCTGGTGTTGG
GAGATTCTGAACTTTAATCGTCAGTTAGGAACGACTCGAGCTATTTCACATGGAATTGCA
AACCTGGAAAGTTTCAAGTGGAGATAGGCATTAACTAGGTTAGAGTAAAATTCATTGAGA
AGCTATCTAGTAGTACATGGTTGTGCAACAGCACCCTCATTTCATTTGACATAGGAGTAC
TTCCCAAAACAAACCCGAACAGATAGCGGCATGCCGTCAAAGAGCCTACATCCCCAAAAG
GGCCACTGAGGACCAACCAGGCCAATCAAGCGCCGAATCCACCGGGCAAAATCAAGCGCT
GGTATTACATTTACACCACGAAACCGTAGGGGGGTCAAGCCCGCCCAAGAAATATGCAGT
ATGCGGAAGGTAGAGAGAGGGGAGGAGTCAGCCGTACCTCTCGAGGAGGGGGGGAGATGG
GTACGGCGGGTCGCTGCCGCTGCGGCGGCGCGAGACAGTAGGAATAGCGAAGAGTGTGTG
AGTCTGATTGCCGCCGATCTTGCGCCGGCCATTATATACGAAAGAGACAACAGAGCAGCT
AGGCGGGTTTGGTTAGGCGGAGGAGACGGGGACGTCACACCATCTGCGCGGCGGATCCAT
CTAAGTTGGAAAATAAACTGAGGTGGTGTTTCTTTTTAACGGACTAACTTTTTTAAGTCC
GAGAGACTAAAGAAAAAAAGTCATTGTAATAAGGGGAACCCTACGCGTTCGCCAGATGAT
TTTTAAAAATTATCCGTCACCAAGCTCGTCCGGATGCCGATCTAACGCCCCGCATCCCAG
CCGCATGGTGAGTAGTTATTTCTTAAAACGACGCTCGAGTTGCCGAAACTTTCGCTTTGT
TGCAAGAAATAAACTTTGGATCCGTTAATTCCTGAAACAATGGTCGAGTTTCAGAAACAA
TTTGCTTGTTGCAGAATTTTTTTCTTCGTCTTTCTGTAACATAGGTATTTTTACGGAAGA
ATTTTTTGCAAGAACGGTCAAAATTCAGGAATTTTTACAACGAAAGTCACGTTGCAGCTG
GGATCCATGCTCAACGGAGAGTCGGGCGCGCGAGCAGGGGCGCATCTCCAGCGAGGCAGA
GAAGCTCCCCGACGGCGGGAGCTCGCCGGCGTCCACGCCGCACACCTCCTCGTTTGCCGC
GCGAGGTGGGGATCCGACGATCCGCGAGGTGGGGATCCGACGAGGGGCTGGATCTCGTCG
GCGAGGTGGGGATCCGGCAAGCTGGCGAGGACCGACGACGGCGGCGGTTCGCCGGACTCT
GGCAGGCTCATCCCCGGTAGCAGAGGAGTTACGACGAGGAACCTGGAGTGCTCCAGCTTC
AGCCCCCGTTCCTGAAACAACGAGCCAGTTTCGGAAAATGATTCGTGATCGAGCCGAGAT
TTAAGGGACAAGCGGGCGGCGGATGGATCAACCGGATCAGCCGGTGAGATGTAAGGGAAA
AGATTACATCCCACCG