morexGenes - Barley RNA-seq Database

Contig contig_160208
Source Contig contig_160208
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_160208 (6817 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_160208

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22069	7	1638 bp	MLOC_22069.1	Available	Available	LOC_Os06g01410.1, FRAME:+2, EVALUE:1e-162, 13106.m00043 protein glutamine cyclotransferase precursor, putative, expressed
CDS Structure of MLOC_22069

Contig Sequence (6817 bp)

>contig_160208 6817 assembly3_WGSMorex_rbca.fasta
CCCGCCACTAGTAATGTGAACTCTTTGCTAGTACCGACCAGAGTANNNNNNNAAGCCCCG
TCCCATAAAGGGGTATGTGGTCGCACATGTAAGGTTGAGACGGTCGACACATCTTAAATC
TCTCATTGCTTTAGAAACCACACTCACACACACCAATTTGTTTCTTGGTACACCACTTCT
CTCTCAAGTGGTCATCCAACTCAATATCATCATCCTCGGGCATCAGTGACACCCGACGAG
GTTTTTGGAAACCTCTTTGTAATCACTTCTGTGTTACCATCACCATGCATATGCTCATCC
TATGCATAACACTACTATCTACTTGTCAACTTTACATCAGTGTGATCCTCGTAATTGATA
ATGGAATGCTCAAATACAAGTGCTCCAGAAGAACCATCGATAACACCATACATGTATTTG
CCAACCTGTATTATTCGCCAACATGTATTTGCTCTCTAACCAAAAGTCGATTTCTCCTAG
CAAAACCACATACGATAATTTTATAGTTGCAAGAGAGAGGTCGTTTACACGCCACACATT
TTGCTATTGATATATAATTATTGCACATTCTTATATTCACACCCAGACTTGAGGGAAGAA
ACATTGGCGTGAAGTGCAATGCATGCAAACACGTTTTGTACTAAAATATAAAAGTAAAAC
CAAACCATGATGTTGTGTGAAAAAATTCAAAAATATTTCAAAGTAGACGTTTTCATTCCA
ATGTCCAAATTTTCAGCCAAGAAATTTGGAAGACAATCTCAAATGCTCCTACGAATCACA
GGTGGAGAAGCACGCTAATCTGAGAGTTACAGTTGACTTCTTTCTCTTGCGACTAAAACC
AGACCCAAATGGCCGCCGGCTCCCGACGGAGGCGGCCCGCCTCCTCAATGGCGCCTATCC
CCCTGTCCGTATCCGCCCCCAGCGCCTCCCCCACGTCGTGGCGCCTCCGCCGCCGGCCCA
TCGCGGCCGCCGGCGCGGCGCTCCTCCTCCTGGCCGCGGCCGTCGCCGTCTGGCGCCCGG
ACTACCTCCCCGCCGCGCTCCTCCGACGCCCTCCGCCCGCCGTCGCCAGGTTCTACTCCT
TCGACCTGGTCCGCGAGTATCCCCACGACCCCGAGGCCTTCACCCAGGCACGCACGCTCC
GCTCCCTCCTGATCTCATTCGCTCCTCTGCTCTCCCATGGTGGGGAATTTTTTCCTCAGA
TCGTTGGTTTTTCGTTCTTTGGCAGGGTCTCCTGTACGGAGGAAACGACACCCTCTTCGA
GTCCACTGGCCTTTATCATCAGGTAATGTAGCGCAATGTGGATCTCTTCTCGTGGATTAC
GGTGATGTAAACGTGATATGCCAAGGAATACGTCCGTGGGTTTTCCACAATAAATTACTC
TAGTTTCACTTGAATTATGTATCTTGGTATTCATGCCTCCCTAGTGGAAGCAAGCAGACT
GGCTATCACCGTTATGAGCTGTTGAGAATCTGTTACTTGAGCTTGCAAGTTGCATCTGTT
TGGTTTGCTTGCTTTCTGTCAAGTGGTTTCTCTAAAGCACTAAATGCTTCTAATTTTGTG
TCTGAACAGTCGTCGGTCCGAAAGGTTGATCTTCAAACTGGCAAAGTACGTTAAATAATG
TGCTTTCCTCATTTGACATTGTGCAGCAATGGTTCACCTACCCTGCACTAAATCACTAGT
TACTGCTTTGTCATTTATCAGGTTTTAGATCAGCACCAAATGGATGGACATATGTTTGGA
GAAGGCTTAACACTTCTCGGCGACAGGTAGATGAACCTCGACTATACCTGACTCTAGAAT
CGCTTTCTTGAATACGATGACTCTATTTGCTTCCGCGGTCCTGTTAAATCTCATTTCATT
TGCTTTAAAATTCTCTTTTGTAGATTGTTTCAAGTTACTTGGTTGAAGAATGATGGATTC
ATATACGACCTACATAACTTTAGCAAAGTAATTCTGCTGACCCTGTTTCTATCTTACTGC
ATTTACAGATGATCCAGATGTTTTTGTTTTAAAGTCGCAGCTAATTATCCCCAACCCCCC
ACCTATCAATGTCTATTGTCTGCTGATCTTCTGAAATATGGGTTTACAATCATTCACGTT
GCATTTTACTGGTCATTTCTCAAGTTTTCGGTCTTTGTTTGCTGATGTCTTGAGGTAACA
AGTTATTGTGCTCGCTGCTGCAGCGTGAGAGTTTTACCCATAAAATGCGTGATGGGTGGG
GGTTGGCTACAGATGGAAAAATCCTATTTGGCAGTGATGGTACCTCAAGGTTGTACCAGC
TGGATCCAGTATCACTTGAAGGTATATTCAGTTAATCACACAGTTGATATTCTATTAGCT
TGAGGCATAATTTCTTTGTTTCACATCTGCGTTGATACAGTGACGAAGACAGTAACTGTA
AAATATCAAGACAATGAAGTTTCCTATATTAATGAACTGGAGTATATAAATGGTGAAGTA
TGGGCAAATGTCTGGCAGGTTAGAGTTTTTACGCACTACCTTGACCATATTGCTTTCATG
TTTTATTATGTTGATGAAGATCTCAAGGGCCAGGACATTTTCATTTGTATACCTTAGTGT
TTATGTTACAGTGCTCCCTGGTGTCATTTATGAATGCTCCATCTAGGCAAAATGTGGATG
AAGTTCAAGTTTAACAAACTAAGTATGGGGTGTGACTATGTGACTCAATTTTGACTGAAG
TGTATCCAAGTTTTATCCTGTGTTGTCCTTTGGTACACTTGATATTCTCAATCAGGCAAT
TGAGTACAATTAATTGGACTGGATTTTTTTTTTTGATCTCCTGCAAGACATGACTAGCTA
ACGCCATTTTTATATTAGCTGTGTTTTCCATGCACCTCTCAGTTTTGAAAGTTATGATAT
GTAGACAGATTGCATAGCTAGAGTTTCTCATGAAGATGGCCAAGTGGTGAGCTGGATCTT
TCTTCATGAGCTGAGGTATGCTCTAAAGTAGAAATCACTGCTGTTGTTCTTTTCCTATTT
CTGAGTTTCTTCATAAGATTGCTCTGCTTGTCTGTAATGTCTGCATTTGAAGTAATAATC
GATCCTTGTGCCCTCAATTTTGCAGGCAGCAACTGTGGAAATCTGGCAACACGGTGAGCA
GTCCCCCTATGGTTCCTTGGCTAATTGCATTGTTAGACGCACATAATCCAAATCCAGTAT
CGGGAGTGACATGACACTGAAAACTCTGTTTCATGTTCCAGGATATTGATGTTTTAAACG
GTATAGCTTGGGACGAAGAAAACGACAGATTGTTCGGTGAGTCCTTTTGCACTTGCAGTT
TCGGTCCGTGGATCAAGGTCTCCGAGGTTCTTGTCCAACTAACCCTTCCACTCTACTCAC
AGTGACAGGGAAACTGTGGCCAAAGCTTTACGAGATCAAGCTGCGCCCGGTGGATGGGCT
GCCCGATGGGTCCGTGGAAAAACTGTGCCCAAGGGCAAGGTTTTATCGCTGACAGGTGTC
GACACCTCGGCGAGGGTATGTACATGTATTCTTATGTCTCCTGGTCGATTTGAGGCAATT
GGCAGTGTAAAGATAGGAATTTTGTTGTTGTCACCTGGTAGTGAGCTGGCAGGAACTAGC
TGCTCATCAGTTTCATGCTGGAGGAGTGTAGTTGTATGTCATGCATGTTCTCCCATGAGT
AGTGTAAGAGGTGGTTGTATTCTGTCATGTAAAGTTCTGCTGCGAACATACCAAAAGAAC
AATGGGAAAAATCTATGTAGTGATGTGTTTACATATGAGTTATCGTGTGATGGTAGCAAC
CTTTCACACAGAAGTTATCGTTTTTCGACATTATAGTGTAGTGAGTGAATACATATGAAA
TGTCTGGCCACTAGTTTGAATTCTATTACCTTCATTTCATAATATAAGAGCGTTTTTTTA
GACTGCCCTTATATTTTAGGACAGAGGGAGTAAATGGCAAGCACTGCAAAACAACATGAC
AACTAGTTTTACAACGACTGACAAGCTTATTCGAGAGAACTGAGTAGAATTAAATTGATC
AACACAATAGAACACCACATCAACTAGAGTTTGGAACAATCGAATGCTTTTTATGACATA
ATACAACGATTGTGTAGAATTAAACTGATATGTACATCAAAAAATTGCGGCAACTAATTT
TTACGACAATCCGTATGAGACAATATGCCAACTAGGTAGAGTTAAAATGACAAGCACAAC
CAATTTTTACGGCAATTCGTATGAGACAATATGGCAACTAGGTAGAGTTAAAATGACAAG
CACAACCAACTTTTATGACAATACGTATGAGACAATATGGCAACTAGGTAGAGTGAAAAT
GGCAAGCACAACCAATTTTTTGTGGCGGATTTGATAAGCACTGAGAAGCTTTATGAGACA
ACGTGCCAACTAGGTTGAAGTAAAAAATGCCAAGCACCAGTAGCTTTGCTTCGGATACCC
TATCCCGATTGATGACTCTTCCCTTTTTGATTGAGCCCTTGAAATTGAGAATGTGCTCCA
CTTTCCGGTCCATTTCCTCTTGCATGCTCATGAGCATCATCATGTCCATTTCTTCGTCTT
AATCCGATGAATCGAAGAACTTATCTTGAATCAGTTGATGAAGCTCCATCGGTCAATACT
CCTCGCGGAACGAAGCATCAGAATCCATCGTTTCCCCTAAANNNTTGACCAACAGATCCG
GTCAGACATTCTGTCGAACACATCGGGCGCAAGTCACAACCAAAGAGTTGTCAGACGTAC
CACAATGTCTTCCGGGCCGGCGACGACGTCCTGCGCGGAGAGGTCAGGAGAGATGATCCC
TTTGACCGAGCGGCCGGGGTGACACAAGCTACTAGGGGGCGGCGGAGCTGTGAGACGGAC
GATGCGCAGAGGAAGAAGAAAGGAAAACAGGAAATGGATCCGGCAGTTTCTGCGGGGTGG
ATTTGGTGCAATTTGCGGTAGGGTCGGATTGTCGGGTTCGACGTGGTGGGCATGCCCGAG
CGCCCGGGCTCCCCCATATCCACCCCATATTTGGTCTGCAAATGGGGGGTGCCGGTCAGC
TCAGGCATTTGAGGTCGGGTTGAGAGGCCTGTCTGGGTCGAATTTTTTTTGACCGGGCAG
TGACCGGGCGGCCTGTCCGGGCGTTTGAGCAGGGTTTGAGGGGTCCAGTTGTAGATGCTC
TAAGCGGATAATAATATGACAAGTTGGTGGAACAATGTGGCAAGTACGGACTGGAAACAA
ATTGTCAAAACATATCGACATGGGAGCTAGTTTCGAAGATCTTATCGGTACAAACTCAAA
TGTGTGAAAAGAGATCATTGATCGAATTAACAGCTTTAAAGATAAAATCTTATGAATTTC
AAACATAGAGGGACAAATCTTGATGACGTCACATTCATGTGTGACAGGGAGAAAGAGCAA
ACTGACAGCATGTAGGAAATAAGGGCATGGCCAATGCATAGCGTCAGGGTGATGCCTCAT
ATGCCATATAGGATCGGACCTGAGAAAAAGTAGGTTCGGATGAAGAAGCGGTATCCTCTG
CAGGAGGCGGGTGCTTGGAGAGAAAAAATGTAGTCCAATGTTAAAAGCTGAAAAAAATAA
AGTGAAAAATAGAGATGCATGAGTCTTTATTTTTGATTCTTTGATGATGCCCACTAGTGG
TAGCTTGCATTGGGGACAAAATCAACATAAATGCCTCAAGCTACTTTTTGTCATGTGGCA
TATGTATCCATATGACACCATTGTACATGCCCTAAGTAGCTAATTGTACTTTTTTGGATG
CATGCGACATGTATTCTCCATGCTTTTTTTTTTGCTTTTGCTAGCGACTTTTGCTTGTCT
ACATTAGCCGCCGCAGGGGAGCACCAATATGCGGCGGTGCTACGTAGTTGCATTCAAGAA
CAATTCATTATTCATCAGACCCTGAATCCGTATCTTGTAAAGATGGTTCCTTGGTCTTTC
TTAGAGAGATCACGGCCGGTCCTGAGATTTTGGGGGCCTGGGGCGGAAATAAAACTTAGA
GGCCCTTAATACTAGTCGACGATGCATGCTTTTTGGGTCAGTTTAATTCGTGGGTCAGTT
TCGAAAAAAACATAGCTTTTTGAAAGGATGCATTCTAAAATGCACAGAAAGAAAAAATAG
AAAATATATGATACATACCATCCCTTTTTATTTTCCTAGGTATCCAAAGATCTTGGATTT
GCATTTTCGTGAGTAAACGCGCATGCAATTATATAAGACAATCCATGAGATCTAAACTCA
AATGAAGATAACCCATAGCCATTCTCCTGCAAACATTCGTACATAATATTTCAATCAAAT
CTAAGAAGCCTTTGATTTATTATCTATATATACCATGGTAGTTTGCTTTTACTTTCAGTT
TTCCACAATCATTGTTTGCTGAACACAACAATTTGAGAGAGATATCACATCATCACAATT
TGTTANNNNNNNNNNNNNNNNTCACTTATATCTTTTGAGTTTGGCAGTTGCTCTAGTATT
TTACCTATATCTTGTTAAGCACGATGGTGTGTAGATTTGATAGAAATATTATGCTCTCGT
TCTTNNNNNNNNNNNNNTTGAGAGCTGGACAAATAGTGATGGTAATTTGCATGAGTCATA
AGACTAGATCTAAAATAATGAGTATTGAGTGAGTGATAGTAAAAACCATCATGTAGCACA
TAATGAGAAATTGAGGGATAATGATATTGATGTGCTGATATGAAAAAGGTGTGAGTGCAT
TATTATTAATTCAGATATGTGTCGATATTAAGATATGTTAAACTTCTTGTTCATCTAAAA
AATAAAAGGGCATGGTGATGATGTGTGAGCATTCGTA