morexGenes - Barley RNA-seq Database

Contig contig_160132

Source Contig contig_160132

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_160132 (5291 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_160132

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_22011	3	2763 bp	MLOC_22011.1	Available	Available	LOC_Os05g28720.1, FRAME:+1, EVALUE:0.0, 13105.m02957 protein PPR repeat containing protein, expressed

CDS Structure of MLOC_22011

Contig Sequence (5291 bp)

>contig_160132 5291 assembly3_WGSMorex_rbca.fasta
GCGGCGCAGCCGGGCTCGAGGAGCAGGGAGGGACTTCTGGAGTGCGGGTTGATTACCCAA
GACCGTAGGGGTTTTTCGCAAAATTTCCACGACGGACGGCAGAAGCACTACGTGCTTTAT
TAGTAGGGAAGGAAAATGACAAATATTTAGGAACGGAGGGAGTAGTTGTGAATGGATCGT
ATACCATATTTTCTTGTCTTTCCTAGATGGCATAAAATGTCCAAGAAGGAAAAAAAAAAC
TTATTATCAACCCTAATGTTTACGACCGTACACCAAAATGGGCTAACTCTTTTAAGGAAC
ATAATGGTTTTTAGCGGACCCAGCCCAGTAGAGAGAGTGGGGACGACAGCAAAACCACAC
CACGCAATGCTAACCCGACGCTATTCCATGGCCTTTAAGCCCAAACACGCAAGCTCCGCT
TGCCTCGCCGCCGCCGTCCATGGAGACCTCCAAATCGCCGCCGCGGCCCTTCTCGCCGCC
GCGGGAGCCCTCCGCAGCGACGGTGCTGCTGTGCCCTTGCCTGGTGCTCCTCATCCTCGC
CCTCATCGCCACATCTATCGCCCTCACGGTCCACTTCCGCCTCTATTGCCACTCCCCTGT
CGGCCACCTCATCTCCCCCCACCGCTGCCCGCGCCACATCTGACCTCGGGCGTAAGAAGC
AACCTCTGGGGCGAGGATGCGGGCGCGGGCCTGCTCCCCGGCCGTGCGCTACCTCTACTG
TCAGCGAGATCCCGTTCCCTCCCCGCTGCCTCGCCGGCGTGGGGGACCGACGCGCCGTTC
CGACTAGCTGGGTCAAGACGCCTCTCGACCTCCACGTCCTCCGCCTCCGAAGACGACGAC
GAGGGGCCCTCGACACCGCAGGCGCCGTCGAGCCACCCAGAGCACGTGGCCCGCGTGTGC
GCCGCCATCGCGGACGTCATCACCTCTGGCGCCGACGCGAACCTGGAGGCAGCGCTCTCC
GCGCTGTCGCTGCCGCTCTCCGAGCCGCTCGTGGTTGCTGTCCTCGACCGCTTCAAGCAC
GCGCACAAGCCGTCTCGCCGCTTCTTCCAGTGGGCCGCCGCATCTGGTGGGTTCGCACAC
TCCCCCATCACCTACTGCAAGATGTTGCAAATCCTCGGCAAGGCGAGGCAGTTCGAGACG
ATGGTTGCACTAGTCCAAGAAATGGGGAAGGCAGGCGCCCTTTGTATGGACGCCTTCAAG
ATTGCCATCAAGTCGTTCGCCGCAGCTGGCGAGATCAAGAATGCAGTTGGTGTATTCGAG
ATGATGAGGGTGCACGGCTTTGATGATGGGGTGGAGTCGTTCAATTGCTTGCTATTCGCT
CTGGCCCATGAGGGATTGGGGAAGGAGGCAGCCCAGGTGTTCACCAGAATGCATGACCGG
TACACTCCAGACCTGGGCTCATACACAGCCCTGCTGCTGGCATGGTGCAATGTAAGGAAC
CTGGTGGAGGCTGGGCGGGTTTGGAATGAGATGCTGGAGAAGGGGATGAAGCCAGATGTT
GTTGTGCACAACACAATGATTGAGGGGTTGCTTCGTGGGCAGAGGCGGCCTGAGGCTGTG
AAGATGTTCGAGCTGATGAAGGCAAAGGGGCCTCCCCCAAATGTGTGGACTTACACAATG
TTGATTCGAGACCATTGTAAGCGGGGAAAGATGGACATGGCAATGCGGTGTTTTGAGCAG
ATGCAAGAGGATGGGTGCCAGCCGGGTGTTGCTACCTATACGTGCTTGCTTGTGGGATAT
GGGAATGCAAAGCGAATGGATAGAGTGGCGGCAATGTTGGAGGAAATGTCACAGAAAGGG
TGCCCCCCTGATGGCCGAACGTACAATGCGCTGATTAAGCTGCTCACGAATAGGAATATG
CCAGATGATGCAGCAAGGATATACAAAAAGATGATAAGTAAGGGACTTCAACCCACGATC
CATACGTACAACATGATGATGAAGTCGTATTTCCTTGGCGGGAGGAACTATGCAATGGGT
TCCGCTGTGTGGGAGGAGATGTATCAGAAGGGGATTTGTCCTGATGTGAACTCATACACT
GTGTTTATTAATGGTCACATACGGCATGGCAGACCTGAGGAAGCATGTAAATTTATTGAA
GAGATGATCCAGAAAGGGATGAGGCCTCCACAGATAGACTACAACAAATTTGCTGCAGAC
TTCTCCAAGGCTGGGAAGCCGGACATATTGTTTGAATTAGCTCAGAAGGTGAAGTTTACA
GGGAAATTTGATGAATCTAATGTGTTCCATCAGTGGGGAGAGAGAATGAGAAGTCGGGTC
AAGCAGACTGTCCCTGATCAGGCTAGGAGCAGGACGTTGTAAGTTACGATGTTTGTAATG
GTGCTTGGAATTTAGAATGTGCTCCTGCTATTCATGAAAGAGGTGCTATAATTTCTCTGA
TGTTGTATACTAACACTTCATTGAAGATTATGCCTCCTGTTTGTTAGACCAAACAATATG
CACTAGATCATGATTAAGTTCTAGTTTCTGTGAAACCCAGATGTGCTGCACATCAAAGCA
TCATTTGCTAGTGCCTCTGCAATTGTTTTGTAGGTACCGTAGTGGCCTAGTATGCACCTT
CCATTGGATCAGTCACATCTTTCCATCTTCCAGTGACTCAACCATATCAACTTATGGTTG
TGTGTATTAAGGAGTATTGATATTTAGACAAATGCGGACACATAGACCAATACTAATACT
CCTTAACAATACGACCCCTATATGTAGACTTAGACATTGGAACTAGCTCGAACATAAGGG
CTACATTCACCTGCTTGATGTCACCTAGCATTTTATACTCTATCCAGTTTGAAGTTAACG
AAAATCATCAAACAAGTTTACTTTGTTATTTTGGGTGCACATTCATTGCATATTCTGCAG
AGAAAAATATAACCAAGTTATATGTAGCTTGAAGGATAAATATGCATGCTTGTAGCCTTG
TAGAAAGTTAGCAGCTTAAGGTGTTGTCATGGTGCTTAGCGAAAGTTCTTTGTTGATGCT
ATCTTGTAGCGGAATATGGGTCACTGTGACAAAAATTATTGCCCATGTGGTCCGTACACT
GCTCATATTTATTAAGTCCACTCTTATACAGTAGTTTCAGTCCCAGGATCACTCCTGTGA
GTACGATTTTGCCTAGATTTCTGCATTACTATCTCTTGTCTTAAATTTCTATTGAAGTGC
TTTTTGCAAAGTAAAGCACCCCGACAAACCTACGGTCTTTCTGACAGGAACTGTTTCACA
TTGCATGTTATCAAGAATTTCAGATAGGTGTAATAGTCCATTCACCAGCCTTCACTATGA
ATTGTCAAGATTATTCATGAAGCTGGTAGAAGCATTCTTATACATCAAGCGATATTGCAT
CAGCCTTGTAGATTAACCTGACATGTACTTGTGGCGTACACGGCCAAAGAATTATATGGT
TTATTGACTGCAGAATTCTAGATGATGCCCTTTTTTATCATCCTTGGAAACACTCAAGCT
TATTTGTTTGAAGTTTCAACTTCTGAATTCTTCTTTATCGTTAGTTACTTAATTACTTTG
AGATATGTAGGTGTGTGGCACATTTTGTTAAGCAAGGTAGTTATTTATATGATTTTGTGA
ATTACCATATACTCCCTCCGTCTGGAATTACTTGCCGCGGAAATGAATAGAAATGAATGT
ATCTAGAACTAAAATACGTCTAGATACATTCATCTCTTTGACAAGTATTTCCGGACAGAG
GGAGTAGCTCCTTGTATGATGTCCTTTAGGCATGTTTCTGTCAGTAGATCAATTATCTAA
TTCTTTGTTGTTTCCGTTCATAGACTATTGCCAAATGCTCCCTTGGCTCTTACCTAAATG
ATAGAATCAGGAAAACGGTTGTCAAAGATATTGATTGCTCCCTTGGCTTTTACCTAAATG
ATAGAATCAGGAAAAATGTTGTCAAATATTATTGATTGCTCCCTTGGCTTGTACCTAAAT
GATAGAATTTTGCAGCTATCTACAGCTTGGAAAGTGGATGGCCGGTTGCTATCTTACATG
GAAATGACATTCTTCTGATATTACAGTCTGGCAATCTGCTGATCTTGCGATCTGAGATTT
AGCTCCTCGTGGTTTATGACATCCTGATGTTGGTCCTTTCGGCACTAGATCTGCATCATT
CAGTTCTCTACTAAATGCTATGGTGCAGATCACATATATTTCTTGCATGTAGACATTTTC
TTTACTCATGCACCATGTAACAATTATTAATCACATCTTCTTATCCGTTTGTTACATGGT
ACCTTTTGGTCTCTAGCATGTGGTGAGTGCTTCCAACTTGGCACTTGGTTGGTATGAGGT
ACTACTAGCTAACATATACTCCCTCCGTTCCTAAATATAAGCCTTAGGTTTCACTAGTGG
ACTACATACGNNNNNNNNNNNACATACTTTAAAGTGTAGATTCATTTATTTTGCTCCGTA
TGTAGACCACTAGTGAAATCTCTTAAAAGACNNNTATTTAGGAATGGAGGGAGTACTATT
GAGCTCCCGTGAGTACTGTTGCACACTTATGTTTGGTGAACTCAATTTATTCTGCTCCCC
ACTCTTAATTAAAATTCAGGACTGCAGTGGTCTAGATCTTGTTTTCTGTTCATATTATTC
CTCCATTAATCTTTCCAGGACCATTTGGTTACTAAGAGAGAAGAAAAGAAATTGCTGAGT
GCGAGATCTTGCCCTTTTTTTCATATTACTCCTGCATTAATCTTGCAAGGCCATTTGTTG
CACTGCTACCATCCTTGTACAGATTCTGATATATACTACTCCCTCCGTTCCTAAATATTT
GTCTTTTTAGAGATTTACTATGGACTACATACGGATGTACATAGACATAATTTAAAGTGT
AGATTCATTTATTTTGCTTCGTATGTACTCCCTCCGTCCGGAAATACTTGTCCTAAAAAT
GTATAAAATGAATGTATCTATAACTAAAATATAACTAAAATAAGTCTAGATACATCTATT
TCTAGGACAAGTATTTCGGGACGGAGGGAGTAGTCCATAGTTGAATCTTTAAAAAGACAA
ATATTTAGGAACGGAGGGAGTATAAGTTGTTATTTTCAAGTAAGTAAATACATCTGCTGG
AGAAGCCTAACCTGGATGAGAGGATTGTCTCTTACACTAGTAAGCATGCACGTGCAACGC
ACGTATCATAATCTACAATAAAACATTATTTAATCTTATTTATCAGTTCTTTGTCATGTC
ATTTAAATGTGTCTCATGCACATGATGAGAGTGCGCGTGTAACATGATTCGAAAACATGT
CTTCACATATA