Contig Data
morexGenes
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Map Locations of contig_160122 (6057 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_160122

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_22001 1 1497 bp AK248898.1 Available Available None
MLOC_22000 1 2849 bp AK251711.1 Available Available None





CDS Structure of MLOC_22001






CDS Structure of MLOC_22000






Contig Sequence (6057 bp)

>contig_160122 6057 assembly3_WGSMorex_rbca.fasta
CGAGGCAGGTCGAGAAAGTGTCAGATTGATCCGGTGGTCGAGGTGGGGATGGGGGGCGGC
TGCAGCCGATGGTCGGGCTGGGTGCTGAATGGCGGCGTGCTCGGCGGGTGGGGGCGGGGG
GGGGGGGGGGGTTGTCAGCGAATGTGCAATAGTTGTTGTTTTTATCCACCTAGGGTTCAT
GTCAGGCTCACCAAGTTCTTTCAGTTATCCACTGGGGAAAATAAGTATATTATGTGTTTC
CCTTTCGTTGTGATGTCACGGAAGGAAGAGGGAAAGCGATGCGTGTGCCCGCCCTTATGG
CCTTGAATCAATGTCGATGTGCCTACGTTCGTTACCCCCTGTCATTGTCGTTGCGTAGGC
GCGTCCACTGTTAATATCCCTTTGGCCGCTGTGTGACGATGCGTATGCAAGATTGCGACG
GAGATATTGTAGCTGGGTTTTGTATCGATTCGGGTGGAAAACTTTAGGACTGGAAACGGT
GATGATGGGAGTCAGCATATCAGTTTTGCCTCAAGGGTTCTTCAGCTTTGGTCTGTAACT
CCTTGGAAGGGTTCAAGGAAACATCTTTCCATTGCATCACTTATTATTATGATATTCATC
AGTTATGTTCCTCACATTCAGCGTTTGACTGAAGCTGGTCTCCCACTGAACTGTTTAATT
GCATCCTGATGTGAGAAACTGCCATGGTGTTTAATTGCATTTGTGGCTGAAGCATGAATT
TTATTTCCGTTCCAGTAAATTAACTTGCCATTGGAATCTACATTCTTTTCATGAACTCAG
AGTGTCATTTGCCAATGCAAATTCCCCAAAGCAATTTTTTCTATTGTTGGTGTGGACTTG
AGGGATTAGTTCAAAAGGGAAAAGAAAATGTTGACCGCAGGATTGTTTGTTCTTCGATAG
TAGTTTTCTTCAGTAATCTGTTGTTATGCAAATATGTTGCTCCATTCTTCTGCTCCTCTT
TGTTTGGGAACCATATTGTTAACGGCACTCCCTAGTCGATTAAGCCTTACTATGCATTCC
TTTCATTTTACTCATCTTCACATGCTTGTTTCTTGGCAAAAACGTAGAACATGACCTCTG
TGAAAAGTAGATTTCCTTGCAACTGTGTAATTCCGTTCAATTTAGTAATATATTCTTAGA
CAATCAGTTTGGCCATTTTGTCTAAACGTGCCGTTCTACTCTTTTGATCTGCAGGAAAGT
GAAGACAGCAGCACAGAGTGGCTCTCCATCTATTTAGAGGACTGCTTGTCTAACCCTGCA
TCCTACTCTGTCTCCGAAGAACAAGCATCTGTAAACCCGAAGCTGCCACATCCTTCATCT
TCCAATCCCAGAAGAAAGAAGAGAAGCCTGGCCTCTGTCATAAGAGATAGTGATGAAGAA
TATTTCACGCTGATTGTTGAGCCACCGCTACTACTTGATCAGAAGCACTGGCTAGCAGAG
AGTGAGCTCATCCTCCCCAAGAAAGACAAGGACCAAGAACTTGTCCAAAAACAGGAGCAG
CAACACGAGGAAGAATATAAGCCCTATACAGTGCAGGTCAAGCAAGAGCAGGTGGTGATG
AGGTGTAGCATTTGTTTGTCCGACCAAACATCACAGCAGTGGCAGGGCAGTCCATCAGGG
GCATTATTGTGCAACAAGTGTAGCCTGAGGCTCAAGGCACGGAACGGGTTCATCAAACTG
GAGCGCTGCGGCCAACAAGTTGATGAAGAACAAGATCATGGAAGGGGGCAGGATAAGAGG
AAGATCAAGAAGACCACATATTATGGAGATGATGAGGAGCCTCCACAGGAGAAGAAGAGG
ATCAAGAAGATCTCATTTGTGGACGAGCAGGGCAAGAGGAGGACCAAGAAGACATATGTG
AATGAGGAGGTCCCACTGGAGGAGGAAGTGAAGCGGTGCACCCATTGCCTGTCCCACACA
ACACCGCAGTGGAGGAGCGGCCCTCTAGGGCCCAAGACCCTATGCAACGCGTGCGGCGTG
AGGTACAAGTCCGGCAGGCTGCTGCCGGAGTACAGGCCCGCCAACAGCCCAACCTTCGTG
AGCTTCATGCACTCCAATTCTCACAAGAAGGTGATGCAGATGAGGATGAGTGTCGAGAAC
GAGAACGAGAACGAGAACGAGCACTCGCACTCGCACTCGCACTCGCACTCGGATATGTGA
GCTTGTGCCGGTGGTCAGGAGCATCTCCCGAGTCTGTCGCGTCGGGTCTTAGAGGCCATT
GGGGTCGTAGTCATGTAGATCATCAGTCAGGAGGAAAGAATCGGACGCGAAAATCCGGTT
AGGTCTCAGTTGAAACTCCTTGTTAGCTCTAGCAGTCAGTCTTTCGCTTGAGAGAACCAT
TTTCTCTAGTCCTGGATTCATCGTCACCTGTGGTTGGTTGATACAATATTATGCCCGCCA
TTATATTGCGATGTTATGCTATGCTTTGCTGTCACCCTTTTTTCCGAGTTCTTTTTCTCC
AGGGCTGAAGCTGAGCACAGCCCTGCTGTTTTGCGTCTTGTGATCCTGTGGCATTGGTTG
GTGACTACTTCTAGTCTGGAACAGAGTTTCATCTAGTTTAGCTGTTAGATTTGCAAGAGA
AGCATGCATGATGACACAACAGGACTTGGCATGCAGATAAGAAGATCTGGATGCTGGTTA
CTGGAGTTCATGTGTTGTGCATGTTCATGCTCACAGTTGTTTGTTTACATTGGGTTTTTC
TTCTGCTGGTGTGCAAATGAGATGGATATTTCCTTTCTTTGCTGCAATCTTCAAGTTCCA
CACAGGACCAATATAGTAGCACTAGTACTACATCTCTATGCAGATTGTTAGTAGTAGATG
TTTCCTTGTGTTTTCCTGCTACCTGCACATGCAGAATCTGAAGTTCCAAACCACTGATAA
AAGTTGTGGCAGCAGATCTAGACACTGCTGGCAGCAATGCTGCAAGAGATTCAGTTCTTG
AGCTTCCATGGGGCGGTCAAATAGTAGTCCATGGGGCAGGCAGGTTCAGACACAGACAGC
AAAGGCCCCTCATCACTCTCATAATTCAGAGACAACTTTGGTGTGACCCACTCACTCATG
CTGAGTGGTGATGATAGACCATGCATGATGCAGATGCAGCAGGTCCTTTCTTGTTTCCTC
CTCACCCACTCTACAAGCCAAGGAAAGGTGTTGACCACCTTTCCTCTTGCATCATCATTC
ATGCCATGCTCATCTCATGGGGCCTCTCTCTCTTGTGCTGAGGCCCCCCAATTTTTTTGA
ACTCATTTGTGTGCTTGCAGTAGCAGTAGCACAAGCTCAGCCCCAATCCTTCTTCCTCTC
ATGCATAGTTTTTCTTTTCTTCTTCTTTTCCTTCTTTGCCCTTCCCTGGTGCAGCAGCTG
TTAACAACCAGTGAAAAGGCCATGGATGGATTTTGTGCTGATCCAGCAGGATTGCCCTAG
CTTGTCGTACCTGTAACAAAAATAAGAAAAAAGAGTACTGTTTGATTGATGAAATAAATT
CCATGTGCCACATGGGCAGGGCAGAGCCATCAGCCATGTGCACATAACAAACTCACCACT
AGACATGTCAAAGTTGTCAACCAAACCAGTTGCACTCAACATCACCAGACCATCAATATT
TTTCTTACCTGTCTCCCATTCATGGTAGAAGATGGTCAAGCCTCTCGTGGTACATGTGGT
TGGGGCAGTAGTGCACTACCAGGTACCTAAAAAATCAATGCATCATGTCTACTCCAGTGT
GGCATTGGCAACAATGCTGCCAGTACATACACTGACCAGAAATCAACTTTGAGAGCAATT
GAAACCTAGCAGCTAGCCTGGATCACATGTAAATACCTCCTTTGTGCCCTGTAAAACCTA
GCATAGCAGCTGCAAGCAAGGGCCAGGAGCATCATATGATTCACAACATTCTGTCACCCA
CCCCCTCCTTCTCCTTGAACCACACAGCAGGTTTTGCCTAATTGCCATTCTAAACTGAGC
TCATGATTTTTTTTAAACTAGGAAAGGAAACAAAGATCCTGACATGTAAGGCACCATGAT
GCTTTATTGCACACTGGCTGACACATGGAATTCAAATATACAGGGCAGACGTAATTCAAA
TCGCCAGAAGGCCAACACAGAGTATTCCCCATTTGCTACACAAAGTGGGACTCAAACTTG
CAAGGGCTTAAATGTCAGACCAACACTAGCAGGGACAGCAAAAGCTTTTATTTCTGTAGA
GGGGCTCCTTTGAACGGAGGGATTTGGCTTCGGAAAACAGCTTTGCGCGCTCGAGGAGTC
TCGGGGATCACTCCACCACCATGCTCTCGGCCTCCTTCTTGATAGAGTGGAAGAGCACCG
ACGAAAGGTAGCGCTCTCCGAAGCTTGGGAATACAACCTACACAGGAGTGAAATGTCAGC
ATTGGGATACAACATGGAGATCGCTGCAAGAAGGCAGCATCTCTTCACTTGGTGGAATAG
GTCAGTTTGCAGTATGAGAGTTGACAAGTGCACATGTCTCCCTACATAGGGCACTCAAAT
GTAAATCTGTAGTTCATCAGATCAGTTTCTTTGTGCTTTGCTTATTATATCAGATGAATT
TTCGGCATGGGGAAGGAACGACTTCAAGTAGAGTCATGCTAGAAACTTCCAGGAGGAAAT
GTGTCACTTACAACAAAGAGTTTCCCTGCATTTTCAGGCCTCTGAGCAACCTTGATTGCC
GCAGCTGCAGCCGCACCAGAAGAGATCCCAACCTACAAGTTTTTATATAGTCAATGGCTG
AGGCAAACATTTGATCTGAATGATCCATACATACAGGTTGGATAAAAATGATGTGTGCAC
GATACTGCTTAATACTCCAACAGCAATAGATAACTGTTGGATAGATAAAACAGATAAATG
TTGGACAGAAACCCCACCAGCAATCCTTCTTTCAATGCAAGAGACTTTGCCATCTCAATG
GACTCATCACTTGAAACCTGGCAGACAATTTGGACGGACCAAAGGTTACACCAGGGTAAA
AGATGCAGACGTATGGAAAGACAAACATGAAAAATCAAGCAAACTTCTATTCTCACCTGT
ACGGTTTCATCAATGATGTCAACATCCAAGACACCAGGGATGAAACCAGCTCCAATTCCT
TGGATCTTGTGTGGTCCTGCTCAGAATAGCTGAATCTTATTAGTCCTGAACAAGCAGTGC
CAAGAACCAAAGCAGAACACTTTTGGTGCGAAATGGTACACGTTGGAAATGGTTAACCAT
CAGAGCATTCTTATTAATTAATATTAAAAGAGAAACTCAGATTTCCAAGTCAAAGGCAAA
TGAAAAGAGAAACTCAGATATTTGACATTCTACTGATTGTGGTTGTAGGACCCGACCATT
TTTGTTGATGGATATTATGAGATGAATTTAATGAGTGAATGTATTAGAACAAATGGAACT
TGATACAGAAAGAAACATTACCAGGCTTTCCACCATTTAAGACAGCACTCTCGGTAGGCT
CCACGCCGTAGAGCTTAAATAAGAAAATACAACAAAATCAGATACTATTTCTCATACAGG
AAGAGATGTTGGTTAGTCATTGCTGGCAGCAAACATTGTACCATACAAAATGTTTTCTGA
TGCTTACCTTGATATTAGGATTTTGCTCTTTGAGGTATTTTCCAGATCCAGTAATGGTAC
CACCTGTCCCAATGCCAGAAACAAGGCCATCGATCTTTCCTCCTGTGCCTTTCCAGATTT
CAGGTCCGGTTGTCTCATAGTGAATCTGCACGAAATATTTAAAACCTGAGAACTCGGAAC
TCAGAGGCAAACATCAAACACCGGCATAAAGACGTTCTGTAGATATAAATGTTAAAATTA
TGCTACACCTTTGGGTTAGCAGCATTCTCAAATTGCTGAAGGATGTATGAGTTGGGTGTC
TTCGCTGCCAGCTCTTCGGCCTTTTGGACAGCTCCTTTCATCCCCAAGAGTGGGTCTGTG
AGGATCAGCTCAGCACCAAAAGCCTTCAGGATGATTCTCCTCTCCATACTCATGGAGGCG
GGCATCGTGAGTACAAGTCTGTAACCCTTGGCAGCAGCCATGAAGGCCAGCCCAATG