Contig Data
morexGenes
Links



Map Locations of contig_160060 (6834 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_160060

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_21960 1 1263 bp None Available Available LOC_Os07g29420.4, FRAME:-3, EVALUE:1e-33, 13107.m10004 protein DNA-directed RNA polymerase III subunit RPC8, putative, expressed
MLOC_21959 8 2875 bp MLOC_21959.4 Available Available None
MLOC_21957 9 2551 bp MLOC_21957.5 Available Available None
MLOC_21958 1 455 bp MLOC_21958.1 Available Available None





CDS Structure of MLOC_21960






CDS Structure of MLOC_21959






CDS Structure of MLOC_21957






CDS Structure of MLOC_21958






Contig Sequence (6834 bp)

>contig_160060 6834 assembly3_WGSMorex_rbca.fasta
TATATATATTACTATGTCGGGAGGGCATCCACATGAACTGGGGCACTAGCACAGCCTTGA
AGATTTGATCGAGACCAGAACCAATTTCAACCGCCCTAACTTCATGGAAAACGCCATCAC
ATTGTAGCCTGGAACATCTGGAAGCAGATGAATGGATTCATCTTTGAGAATGTTACCCCC
TCTCACTGTGCTTAGCACAACTTTAAATCAAGCGTACTCTCTTTAGCTCATGCATAGGAT
CACCATCACTAGTTCCCTGCAGTGACCTAACTGCTTCCAAGGTTAAGCATATATAGGTTG
TTTTCCTGCCCCCGCAACATTTTCCGTCAAGCTCAGCCACTTGTATACATTTATGTAATT
TGTGGTGTTTATTTATTAAAAAACTTATATACTGTTGGAGTGTGTACTACACATTTTCTT
GCTCTTCCTTGCTTTTGGCTTGCGACGCTTTGCCATAAATTAAAAGATGCTACTTTTTTT
TCTTTTATCAGGACAATGTGGAGGGTCAACCTTCCAGCGGCATGGTATATGCTCCCACTT
CCCTTTGATTATTTCCTTTATTGTTGCCCCAATGTCATGAACATAATGACATTGTGTCTT
ATCGACTCGTCAATGCTCAGCATGCTAGCAATCCTGTGGGAGCTGAGGCAAGCAACCATG
GTGGCAAAAATGCTGAGGAACATGCACTAGTTCCAATTGTTCCAAATAACACTACGAATT
TTAGGAGCAGTTACTCTGATAAAAATACTGGGATGGAAATAGCGGTGAGAACAACTTGCA
TCGTTTTCTTTCCTCTCCCTGTCCATATCCTCCTAGTTTTGTTTTTTGCTCTCTGACGTA
TTGTTTTGTTGATTCAGAAGAAGAGAGCAACGAACAGTCCAATTGATCATGTTGGCATAG
GCATTCCTGATGATGAAAATGATTCTGATGAGAATGAGAAGAAAATGAAGGTAATTATCC
TTTTCGTGACATTAAACTATACCAAAAGCTCTGTAGTTGTGCCAGTTTTTCTTACTGCTT
TGTCTGAACTCAGGGTAGGCATGGTTTCGTCTTGAACACTGCAATCGCCTCACTTCCTTG
CTTGGGGTTTCTCATTCCTTATTGGACTTTCTTTTGCTCAAATGCAAATTTTGACACTTG
GAAGGACATCATTCCCACAGGACACCTTGTACTCACCATCATCAGCCTTATTCTGATAGG
TCCTGCTTCAAGCTTCAAGGAGGGAGCATTGCGTGACAGTTTTGGATTCAAACTCCTCCA
AATAGCGCAGCTTTTAATACTTCTGTGGTTGTGCTCAGCATCATTTATAACACTGCATGT
TTGTAGAGATATTTCCAAATCAGTTGTATGGCCTTCTGCCTGTGCAGTCTTGTGCATGAC
GGTGATCATTTGGATGAATTACTTTCAGCCGGCAGAGGTACAATGCCTCTTGATCACGAC
TGATGATTTCAAATTAAAAAGTAGTAAGGTATCATACACATGTCCTTTGATTCTTTTTTC
TCTTTCAGATGGTGATTAAGCGCATAAAGACTATGTTCAAGAAAGCGACGCAGTGGCTGG
GAAATCTAAGCCTACCTGAATGTATAACTGCTAAATTCAAGAAAGTGCAAGGGACGCAGC
TGAGAAGCCAGAGTCAGCCCATGGACACGGCGTAGGCAGACTAAGGTTCCTACTTTTTTA
CGTTCTTGGTTATCTAAAATTATACGTATTTGTGTTTCTTTCAGAAGAAGTGGACAAAAT
GATACTAGTAACGAATTAGGATAGTCCATTGAATTGTCGTCTATTGCCCTTTATAATGTT
CGAAAATTGGGATAATGTAGGAGAAATATAATTTTGCATGAGCATTGTTTTTATTATGTG
TAATGTCACTGGTTATATGAGTGAATGTACTAAGAGCAGTTATTATGACTGCAGAGAACC
CTATATGATGTGCTCCCGTGGGGATATATCATTCGTGAAATCGAAGTGAGATGAGGCTCT
ACGCAGCGGGTTGAAGAAAATTTGCAACTGAACTTAAAGACTTTATTTCCCTTAGCAATT
TGTTTCCCTGATTATGTTTTCCCCTGAGCAGATTCAGTGTCTATTGCAGTCGTTTGACTG
ATTTTGACTATGATTATGCCACAATTCAGTGTGTGTTTTACGATTTGAATGGGGTCGATA
TGACTGGTCGGAACTTATGAACGATTTGAGATGTGATGTGATCACGATCAACAGTAATTC
TGAGGTAGCGCCTTTTTGAGATAGTGTTTTGTTTAACTGTACTGACGTAAAAAAATAAGT
AATGGGGATGAACAAATTGCCTGCTTTATTTGGTAACTGATTTCGTAATCCTAAGGTAGT
AGTACTTGCTTCAGTAATACTCCTACTCCAGAACGAAAAAGTAAGAATAAAGGCAATGAA
TAATACCTGGGTTTTTTTTGGTTTCAACAGGGAATGGTATTGAAACCCATCACAGTGGCT
GTCAAGTGCGACGGTGGACGAGTTTCGCCGTGCTCCACAGTGATTTGGGCAGTCTGAGGC
AAGAAAAACATGAGCATGTGCAGGAGGATGGGCACCTCCATAACCGCCGCCGGCAGCCAA
TGCCGCGGATTGAGTCACCGTCGATGCCGGAGATCCATGTGTCGCCACTAGCTACATCCG
ACGCCGTCCCCTTGGGCTCTGCGGGCTGCCGCTAGAGTAGGAGGACAAGGAGGAGCTGCA
GACCAGATGGCTGAGATGCTCAAGGCCCAGCCACCAAGGACGGGAAGAGGAAGCTACCGT
TCACAGGGGAATGAGTGAGGTGTGTGTTTGTGGATAAGGAAGACTGGGTGACCGAAAGTG
CTGTTCGTTTTGTCCTCGATACCTCTCTCGTACTAGTAGACTCGGTCTGAGATTCCCAAG
TCCCAACCGGACCGCTTCACTCTGACACGGGAGGCGACGAAATGTTAGCCGTCGGTCCTC
CTTCCTCCCTCGTCGACGTCCGACGAGGCCTCCGGCGAAGCCTGCGTGGTCCTCAAAGTG
CCATGTACAGTAGTATTTCCCACTTCGAGTCTGACCATTCTTCTTCTTTGCTTGCCTAGT
GAAACACTGAAACTGGGATGCTAAAAAGTTGCACACAAATGTTCCCACAAACAACTTGCT
GCTATTGCTCTTCCTTTTCCTCGCAATCGCCCTCGCCCGCAGCTTCACCCTCTCCCTCGC
CCTCTTCTTCATCTGCCGCCCACCAGACGAGAAGGCCAAGACCATCTCATTTAATACCTC
CCTGTAAAACGATTTGTTTACCCCGATTAGTCACTCATGAAAGCCGTCGACGGATGCATC
CAAGTTCGGTGTGCCGTCACTGTATCTCTGCAAGATAATACATATACGAGGGAGGAGAAA
TACATTGATCTGCATCGGAGCAAATGGCATGTCATCCTCCTTTTGCTCAACTGAATCGTA
TCTGCACAGATATCGCAATGATCGTAACCCTTTTTGTGGTTATTGACTACGTGAACGAGC
AGTAGTGATTGCTTTGGATTAAACAAATAAATAGCTTCAGAAACCTCATCATCAATGTCA
AGAGGAATGGAAGTTAAATTGTCTCCAAAAAACAGCGCAAAAAAAATTTGTCTCAAAAAA
GTATCAGTCCCAAAACCGACTAAAAATATCACATAGTTTACAAGCCAAATAAAAATTAAA
TTATCTCAAATGAAATAGACCAATACATCTATTGATTGTCAACATGAGCCCACATATGTC
CAACCAAGTCATCTTGCAACTGAATATGAGTTTTCCAATCACGCATTTGAATGAAATTCG
GTAAACTACACAAACGTTGCCGCTCCTCCATGCCCATGCACAACATTCTCACTTTAAAAC
TGAAACCCTTATCGTAGATATGTTTCGGACGCTCATCCTCAACGATCATGTTATGCATGA
TTATACAAGTTGTCATTACCTTCCACAACTTCTTGATGCTTCCACATTTGCAAGTACTCG
GGCCAAACACTGCAATCACAGCCCTGCAGAACCTATACATGAATTATAGGCACGTGGACT
CGCTCATACGGACACACTCATCAATGAGATCATCAGAAACTCTGTATGTAAGCATCCGGA
TAGCTGCAGTGCATTTCTGATAAAAAGAAAAGCCAATCTTTCCAAGGCCATCCTCCTTGC
ACTCGAAATACTTATCGTACCCAACCACCCCCTCTAGAATACGGTTAAAAACATGTTTAC
CCATACGTAAATGGCGCCAGAATTGGCGATGTTTGAAGAGCGGATTGAGTGTCTCAAAAT
AGTCCTTCCAAAAAAGAAAATGGCCACTCTCTCGGTTGTGATTCAACGCAGGAGTGTGCC
CTCGGATCGGTCCCTGGAACAACGACCGCTGCCTACTCTGATGGTCATGGACGACCAATA
CAGCAGCCACCATCTACGCATCGTCGGATGAGGAATTATTGGAGTCGCATAGGAAGTTGC
GCAAAAAGAACTTGTCAGCGAAGTCCATTTGTACCTTTGGGGCATACCATCGAACAACTT
GCGAGCGTCGTCGAAGAAACTGATCGGCGAAGAGATGCTCGCCTCCCCTGGACCATGTAG
TTGTCCTGGTGGCGTCTGACGAGCGTCGCGGCGTTGTCGAAGGAGCTGGCCGAGGGCGTG
AGGCCAAGGTGGTTCTCACGACGACGGTGGGAAGAAGCTCCGGTGGCCGGCGATAACATG
GGAAGGTGGCGTGCTAAGAGGGAGGGTATGTGGGCGTGGACTGTTAGTGAGGGCACCGAC
ATTGGTCGATGCGGTGAGAGGGCGACGACAGGTGAGGGGGCTCACTGTCGATGGGGGAGA
GAAAAATGATCAATGTGCCACTGACTAGCGGACCAAGATAGAAGTAGGCGGGCATCACGC
GCGTCCTCCTCGTGTCCACACCCACGCAAATGAAGCTCAAATTCAAAACAGTATAGGTTA
GCAGACGGACGAAAAGCAGGATCACGTGTTAGACCCTTTTTTGTGTTCGTTTTTGACCCA
AACACGCATGAAGGAAACAGGGCAACATTGGAGTTGCTCTAAAGCCCTAGTTGTGACGTA
ACTAGTGAACAGGAACCTTTGGTCCTTGGATGTATATACACTCTATATAAAGAAAAGAAA
GTAAATAATTAGGAGTAAAAAGTTAACCTATAATAGCAAATAAAATTGGTTTTCTTTGCC
CTGAAGTCAAAATTGGTTTTTTACGTGAAAATTTATATGCTAGTGCAAAAGAAAGTCAAG
TTTACTGTAGAAAAAGCTCTCATTTTTTTTCCTAAAATTAATTAAAAAATAAATCCACAT
ATACGCCCATGAGCCAAAGGGTATTTCCCCGGAACTAGCTAGGATGTCTCAAAGTGCGAT
GTAGTATTTCCCACTTCGAGTCTGACCATTTTTCTTCTTTACTTGCCAGTGAAACTGCGA
TACTACAAAGTTGCATAAAAATGTTCCCACAAACAACTTGCTATTATTGCTCTTCCTCAC
CCTCGCCCTCGCCCTCTTCATCGCCCTCTTCTTCTTCTTCATCGGGCGCCCACCAGGCAA
GAAGGCCAAGACCATCTCCTTTAATACTTCCCTGTAAAACGGTTTATTTACTCCGATTAA
TCACTCTAATCACTCATGAAAGCCGTCAACAGATGCATCCAAGTTCGGTGTGCCGACAGA
ACCGTGCACAACCCTGCTGTCACTGTTATCTCTGTATGATAATACATACACAAGGAAGAA
GACATACATTTATCTGCATTGGAGCAAATGGCCTGTCATCCTCCTTTTGCTCAACTGGTA
TAGGTGGGTACTTTATGCTGGACACCAAGAATCGTATCTGCACAGAGATCGCAATGATCG
TAACCCTTTTTGTGGTTAGTGACTACGTGAACGAGTAGTAGTAGTTACTTTGGGTTTAAC
AAATAAATAGCTTTAGAAACCTCGTCATCAATGTCAAGAGGAAGTTCATCACCATCTTCA
GTCTTCAACGCCCACCTGCCGTCCTCTCCCCTGGAAATATATGAACAAGAAATGAGACAG
AAAGTAAACAGAATGTCATGCATAAAATATGTGCTTCGTCAGTCATAAATCAGGAAAAGA
AAATCATTCTGTATTATAACCCACCTAACAACTAGTGCTTATTTCAGTTCAACGCATTTG
AAGATGTTTAAAATAAATAGACGTGAATATGTACTCCGTGCAAACACCATTTTTTTTCTA
CACTGTTTTGTTTTAGTTCCTGATGCAATCAGAGTTTTCATAACAGTCTAGCTAAGATGC
AATCAGAATATATACTCCCTAAAGAAATATAAGAGCGTTTGGATCACTACTTGTCGGTGC
ACAAGGACGGGGGTACCCAGTGCCCCTAACTTATGCACAGGCAGTAATAGCAAAATCCAC
CAACGAAGCACAGTCAAGGCCAAGCCCAAGACGGAGGAGCCGCTCTATGAGGGATCAAGG
AGCGCATCAAGGAGACCAAGACTCCGGCAGAAGCAACCTACGCTGGCTAAGCGATGCCGG
CAAGGTCAAGACAACGGCTCAGAACAGGCCCGAACAGCGTCAGTCACGTCCCCGGTGCCT
GTTGGGGACCGAGGCGCTCGCATCTTCAGGAAGACCCGGCAAGCCGTCCCCCGGCAGGCA
CGAGCCGATCGGCCACCGCTCCACCGCATCGCAACGCCAGTCAGTTGTCAATGCGGTGTC
GAGCCCCCAGGTGGTTAAGTGGCTCTCGCTAAGCACGTGGCGGCTTGGTGAAGACAGATT
ATGCCACCTTGACAACCGTCCATAGGCATGTCAAGCTGTGGTGCAATAGTTAGCTAGAGC
GGTGGAAGGAGCTTGCCGAGGACACACACCCGCACGCCACCTAAGGCTGCATTT