morexGenes - Barley RNA-seq Database

Contig contig_160040
Source Contig contig_160040
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_160040 (6705 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_160040

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21941	4	2164 bp	AK362539	Available	Available	None
MLOC_21940	1	1501 bp	None	Available	Available	LOC_Os04g34810.1, FRAME:+1, EVALUE:4e-114, 13104.m03382 protein transposon protein, putative, Pong sub-class
CDS Structure of MLOC_21941

CDS Structure of MLOC_21940

Contig Sequence (6705 bp)

>contig_160040 6705 assembly3_WGSMorex_rbca.fasta
GTAGGATAGGCGGATCCGGGGCCTCCCCGCCGCCGCCCTTCACCTCCGCGCGACGTCGAG
CCCCGCCAAGCTCCGGCCCTGCCCGCCGAGCTTCAACCCGCGCGACACCGAGCCCCGCTG
AGCTCCTGCCCTGCCCGCCACCTCCGAGGTCCTACCCGCCTATTTGAAGTAGATTGTAAT
TTAGGTTGTGTATTTGTAGATGGTGTTGTTTGACTACACCACGTCCGATGAGGAGTTCGA
TGCGTAAGAGGAGGATGTTGCTATGCTTTTGACGGTGCATAGTACGATGAACAAGAAGCC
GAAGCATGGAGGTTCTACAATGGGCCTAGAATACATTCGGAGGCAGCAGGAAGAAGCACA
TGCCAAGCTCATGACCAACTATTTTGTTGAGAGACCCGTGTTTCCCGAGAGGTACTTTCG
ACGCCGGTTTCGCATGAGCATTGATTTGTTCAAGCACATCGCCGAGAGTGTCAAGCTACA
CGACAACTTCTTCAAGCAGAAGGGGATTTGTACCGGAGATCTTGGGCATAGCACCTACCA
AAAGGTGACTAGTGCATTGCGGCAGTTGGCTTACGGCATTCCGGCAGATCTTGTTGACGA
TCACTTGGCAATGAGTGAGAGTCAAAGCATCAAGTGTGTGAAGTGTTTTGCGGTGGTGAT
TGTTGAGGTGTTCGGGCTCGAGTACTTGAGAGCACCCAATGCTCAGGACATGGCTCGGCT
ACTAGAGGTGAACAAGGCCCGTGGCTTTCCAGGTATGCTCGGTTCCATTGATTGCACGCA
CTGGAGGTGGAAGAACTGTCCTGCAGCGTGGCATCGACAGTTCAGAGGGCACAAGAAGGA
TTCCACCATTATTCTTGAGGTTGTGGCTGACCATGAGACTTGGATATGGCATGCATTTTT
TGGCATGACCGGTTCTTGCAATGATATCAATGTTCTCCAACGGTCTCCTCTATTTGCCAA
GTTAGCCAATGGAGAGTCACCACCAATGGAGTTCCAAGCCAACAGCAAGAGATACAAGAT
GGGCTACTACCTAGCGGATGGGATTTATCCCAAATGGGTGACATTTGTGAAGCCGGTGCA
AGCCCCCAAAGGTAAGAATGAACTTGATTTTCATAATGCTCAAGCGGCGGCTAGGAAAGA
TGTGGAGAGAGCATTTGGGATTTTACAAGCCCAATTTGCAACCGTGAGAGGACCGGCTAG
GTTTTGGAATCAAGATATTCTTTTGGTACATCATGCATGCATGTGTGATCATGCATAACA
TGATCATAGAGAACGAGCGTGGCCAAAATATTGTCTACGGCACGTATGAGTTGATGGGCG
GGCCAGTTCGGCGAAGGCGAGGTGGAGACCGAGTTGCCCGCTTTCTTGAGTCCTACCATG
ACATTCGAGACTCCGATGTGCATGAAGATCTTCAAAAGGATCTCATTGGGGAGTGGTGAG
CATGGAATGGAAGGCAAAAATCAAGACCTTGTACTTGATTCGTGTGTATGTGAGATGAAC
AATTTGTGTGTTGCTTGATGAACCATTTGATGAACTATTCGTATTGTGTTGTAATAAATT
AAGTACTCCCTCCGTCCCAAAATAAGTGACTCAAAAGTGACTCTACTTTGTACTAAAGTT
AGTACTAAACTGAGTCATTTTTATTTTGGGACGGAGGGAGTACTATTTAAGTTTTATTTG
TTTGAATTTATTTTAGATCATTTATCATATTATTTGTTTGATATGTATGTGCAAATGCAG
AAAAAGTTTTGGTGCCCTAAAACGCTAAAACAGGTGCCCTACACCCAAAAACAGCCCTCC
TAAAATAGGGCAGCTGTTAGAGATGCTCTTATAGCGGTAAGATTAGGAATAGTAGCCTAA
GCATTCTAAGGACCTACAGCAATTGCTAATTATCTTAATAAATATTAGCTGCGACGCTGG
AAAAATTAGGACAGTAGTTATACAATATTATTGTGCCACTGATTAACATATACAGCTAAA
ATTAGGACAGTAGTTATACAGTCACACTGATCTATGCTCCATAACTAGATAAAATATGAA
CCAGCTGAAATCATCCACTGGTTGAAATTTCCAGCAATATGTGGGTCTTTGGCTACCATC
CGTCGCCCATCTATAAGTACCAGTAGCATATACCAAAGGCGCAATTTTCACGGTTTTACG
TGGCAGTGATGTTGAATTTTACACTTTACACTCCTTTGGTTCACAGGAATATTGTAGGAA
TTTTAAAGGATAGGAACTTTGTAGGAAAAAATCCTTTGGAGCCCTTTGGTTTGTGGGAAT
GGATTCCTATCCCTATGTAGGATAGAAATCTATCCTTTACATTTCAAAGGAAAAAAACAT
TAGGCTAGACTCAATGAAAAAATTCTTATCCTATGCATCAAATGACATCTCTTCCTCTAT
AGGAATTGAGATGCATGTCATCTCACTTCCTATGAGTTTTCTATTCCCGTACTATTCCTA
TCCTATGAACCAAAGGAGGCCTAAAGAGATTCACAAACCTCAATAAGCTTGACATCAATG
CGATCACCAACTTTATAAGCCTGAAAAGGAATAAAGAATTGGATAACTTAAACACAAGAA
GGAATCAAACACAAAAGTAAAATATGTGATATATTTTCTCACATCCTCTGCCTTGGCCAA
CCAACTTGAACTCAACTCGCTGATATGACATAAACCCTGCAATTAGATAATCAATATTAA
TTAGAAATAACTTTGTGCATGTAAACTAATTAACTCCTTAGAAGCCCAGTGAGGCCACGC
GGATTTGTCAATGAGAAGTAAAATTACCACTTCTGCATTGTGAACATGCAACAAATATGT
TAACATTGGGATTAATAAAGCAAATTTTAGTATCTACTCACCTCACGCCCTGGTGCAATT
TCAACAAAAGCTCCATAGGGAGCAACTGTTTTGATCTCACAGTTCCTGGCAATCGAGTTT
CCAAAAAGTGTTTTCATTAGCTCAAACCCAGAAAATGTTTCAATTGAAAAGTGAGTGCTT
AACTGAATCTGCAGGAAGCATAACATAATATGAAGAAACTATATGCACATAAAACCAGGG
GAATAAAACGAATTGACACCTGAAAATTTCTCCAACTTTTGGAACCATGGTAAGATTAGT
TATTATATTTTTTGACTTCTCTAAGCTTTTCATGTCCCTTGCAGTAATTTTTACCTGCCA
AAAGAATGTCAGGTAGTACTTTGAAAAGTTAACAGGCTATAACCAAGTTCTCCTTACCGT
GCCATCATCTCGAGCATCAATGGCATATACTCCAGTCTCCTCGAGTATGCTTTTTATTGT
CCTTCCACCAGAACCAATTATCAAATTCACCTTGTTAGGTTTAACCTTGAAGAAAAACAA
TTGCAGACAAGTTTAAAACATTATAACTGCAGGAAAATATAGAAGATCACCATGCTTCAC
AAACAATGTACCAACCTTCATAACATGAATAACAGGAGCATGGGGAGACAGTGCTTTACT
TGGCGGAGGCGAACATTTTAACATTTCATCTGAAGAAGACAATGAAATGTTACATCAAAT
GAAATACCTGAAATAGATTTGCAAATGGAAATACAAATGGCCTATTGAGTAAGTTGCTAC
TATTCTTAATAATCTAAGAATGGAGAGTTTGTTAACCATGGAGAGTTTGTTAACCATAAT
CATGTTGTGTGATTTACTATTGGAAGTTTCTGGGATAACCCTCCCACATTTTAGCTGCAT
TCACAAATGATGTCACCTAAGTGATGCATTCAAAATAGATATGCATGATGTCTCTTCCGG
AATTAATACATATTATAAGTAGAATATGATTTTTGTACAGTGCAGAGGAGGAGACTTCTT
ATTAAGGGTTTAAAATGCTCATGGTAGAATTTCGGTGAGCTAATATAATTACATCTTCTT
TCTTTCTGTTTATGTTACATCTTGCAGCTTACTTACAATGCATCATAAGTTTCTGAGAAA
ACGCAAGAGAGCTTGCGTTTCATTGCATTGAAAAAAGAGAGTTTTGATTACAATCCTCCT
AGGAGGCAGTTACAAAGTCCATGATCGAATCAGTGGACGTCCCATGTTTGGGGTATGATT
GCTCTAAGTCCTAGAGCACCGGCACCGGCCCAATGCATCACAAGTTTGCAGTTAGCTGTT
ACAAGTATCATGAAACTGGATTTTCCCGGCATGGTATCCACAGATAATAAAGCAAGATTT
GAAGGTGAAACAAAAGCTATGCAGACTTACTTAGAATATGATTTCTACCATCTCTAGCTT
GTAGAAGTGCTTGTTCCATTACAGGTAGAGTTATCCCCACTACCTGCCACAGCATAACAT
GCACACAGATAACTTCAGTGTTGATGATATGCTACCTAATAGCATAGCCAAAAAACAAAT
GCTGGTTCATCTAGTCGTTAGTGTCTACAACCTTGATGTCCATCTGGAAAGCAGATATAC
CATGTTCATTACCAGCAACCTGAAAGAGGGGTTGACTGGTAAGCAAATTAAATAATTCAA
ACGGCATCAATCATTAACCCTGCTACTGCATTTATATGGGGCAACTCGGGGTAGTATAGA
AGTTAAACCTTAAAATCCATGTCACCAGAGGCATCTTCAGATCCAGTAATATCAGAAAGA
ATAAGTGGTGTGCCGTCTCCACCGAATTCATGCGTGTCAAGAACTAAGCCCATTGCTATT
CCAGCTACAGGGAACTTTATTGGAACACCAGCATCTTGAAGTGCTAAACAACCTCCACAG
ACAGAAGCCATGCTGGTGATAGATAACAGAAATATATTACCAATTTAAGAATAAAAATAA
TACAGGACAGGCTGTACTGCATGAGACAAAATTATTGCTCAGCTGGTAGACTGTCGTGAA
AAACATTGAGTAAAATCAGGCTAGCCTGTAGCCTGCTCACAAGGATGATAAAGACGAGTA
GCATAATCCATATTATGACAACTCCAGTAGGGAGACGCCAAGTAACTACATACGATAGTA
ATAGTAACACAACGAGAACATAGTAGTGCAAGGTCAAGTATCAACACTGTACAAGCTTCC
CATCGAAAGACTTGCAAACTACAATGGAAGAAAAGCATGAAATGATCATTACCTGGATGA
GCCATTACTTTCAGTGATAGTACTCTCAACGCGAATAGTGTACGGAAAATCCACCTCTGG
AGGTAAAATCGGTTCCAGCGCCCTTTCTGCAAGCATACCATGACCGATCTCTCTCCTATT
AGGTGCTCCAGTTCGACCAACTTCACCAACAGATGATGGAGGGAACGTGTACTGCAGTAT
GCAACACAATAATTAGCAATGAAGTGTGATCATGGGATGTAACACATGCATACAGCAGTC
AGGAAGACAGAAACACACAATAACTGGACCGGTCGGTGAAACCTTGAGGCATCTGTTCGT
CAGTTCCTATCATGCATACGGCAATCTAGAGCGGCTCAAAACATGGTAGTTTAATATTTA
TTGCCTGGCCCTCCAAAGAAATCACTACAAAGCGCCTAGTGGGAACTTTTTTAGATAGGT
GGGACGCCCCAAACTCAATTCTTACTACGGCGAGTCTTCCCAAATAATAATAAAATTAAT
TAGCTTTTAGAGAAAGAACCGTGAGCTGAACCAGAAAGAACATGGCAGTGGCGCCAGTCC
CGGGTTTTCTCTAGTTGAACAGACCCAGTGTGTTTTTGTTAAACTATGAGAGCAACATAA
TATTCAATAAATAACTGCTTAAACTACAAAGTGGTACCAGTATCTTCACAGCTTACATCT
TACTTCAAATATATTATGAATGAGCTCTTTTAAATGATAGTAGCTGTATGCAACACATGT
AAAAAAGGCTAATATACAACTAAATTTTTTGTCACTGTTTACCTTTTGAGAAAAGCTAGT
TAATATAGTATAGGGAGTTTTGGAGGCCGAAATTTTAAAAAAATAATCAAAATTCAAACT
TCTCTGTTTCAAAAATGAAACGGATACAAGGATGTAATGTATATGCATGTACAATTTCAC
GATGAAATATCTTGAATTGCGAGCTGCACAAAAAACAAAAATCATTAACTTTGAGAATGA
ACAGTGCATGTACTGAAAAGACACATATTTTTTTGGTAGCTCTTATTTTAACGTATTTCA
TCATGAAAATTTACACATGTACGTATGTCTCTGGCTGTATGTGTATTTTTTTCAAAAAAA
AAATGAAACGTAGAAGTCTGAATTTTGAATTTTTCAAACTTTGGCCTCCATTTAGCATTT
TCGTAGTTAATAGATCTACATTTACCAGATCCGGAAATATTTCATAAGGAATGGTTGAGA
ACAATTGCCCTCATGAATGGAACTATCTAAAAGCCCAACAAAGCATTACAAATCGGGTAT
GTGGGTACGCGAGAAAACAATTAATCATGGACGACATGGGTCCGCAACAGGCGACGCCCG
AGCAAACCGCGACCGCCATTAATGGCCACCTACCCCGCACCGACCCTCGCGCTGAAGTTA
CTCCACCCACCACATCGAGTGCGCAAGGGGTTCCGCAGTCTCCGCCGCTCACCACACGAC
CCAATCCCTCCTCTCGTCGCGCAGATGGCGAATTCACGATGGAGGAGACGAACTCGTCGA
CTTCGACCGCAGGAGCAGGTGGCGGCGCCGGTGGTGATACGGGAGGTGGAGCCGGTACCG
GTGGAGATGCGTCCGCAGGTCGACTCGCGCTCGCCGGAGGCGAGG