morexGenes - Barley RNA-seq Database

Contig contig_159989

Source Contig contig_159989

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_159989 (4079 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_159989

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21892	1	378 bp	None	Available	Available	None
MLOC_21893	1	3411 bp	MLOC_21893.1	Available	Available	LOC_Os06g40360.2, FRAME:-2, EVALUE:9e-24, 13106.m04194 protein OsFBL30 - F-box domain and LRR containing protein, expressed

CDS Structure of MLOC_21892

CDS Structure of MLOC_21893

Contig Sequence (4079 bp)

>contig_159989 4079 assembly3_WGSMorex_rbca.fasta
CTAGCAGCAGCTCCTGGCCTCCAACAGCAGCCGACCCCTTCTCCTCTTGTCCTACAGCAG
CCTGCCAAGCAGCAGCACAGCAGCTCGCCTCCTCCTACCTCTCAGCCGACGAGCCGCACC
TCCCAGTTCTGCCGCTGACTCGTCGGACGCCGCCCAGATCCGCCACCACCTCGCCGGACG
TCGCCGCAGTCTCCTCAGGCCCCGCCGACCCTGGCCACGCAGCTCCCGTGCCGCGCGCCT
CGTGCGCGCGCATAGCCCAGCACGTAGCCGTCCCTCGTCGCGCCTGGCCCCGTCGGACAC
CGCCACCTCGCCGGCGAGCGATTAAGCCGCCGCAGCCGCAACCTGCTTTGATACCATGTT
GGCTGGAGAGAGGTACCTAGGTGGCTGGCCGGGTCGAGCTGCTGTCTCGTTGCTCTCACG
AGGAGACTCTCGTGTGGCGGCTGGGACTGGGAATGGGAGGGCTGGATGCCTCTTCTAGGT
CACTCCCTCCACATGGGCTTGAGCCCTAAGAGATAAGAGGATGGGCTTGGGCCCATACCG
GTTCAACACATATACACTCATCCCTGTGAACGCACGCACCTGCACACACCCTACTTCTAT
GAGCACCTCTGAGAAACTGAGCCGGCACATCATCTACGAAATCCATAATAACACCTAAAT
TGTACAGACGTACCTTTTCGTGGAGGAGTGGACCAGGCGGCCTGACCAAAATCCTAGCCG
CCGCCCCATCTACTCCCTCTCCAGGCGGCCTGACCAAAATCCTAGCCGCTGCCCCATCTA
CTCCTCTCTCGCCACCGCGGGGGCCGTGGCCAGGCAAAGCCTGTGCGGTGCGATTGGCAG
CTGGCAGGGCCTGCCTGCTTGTGTAAGAGTTGGAGGGCTGCTGCGGGATGGCTAAGTATA
TGTGTGCTCGAGTGTCTGTCTTCGTCAGGCGGTGCTTGAAGGCGTTGGCAATCCAGCGTG
GTGATCTTCAACGGTGACCCAACCTGGCTAGGTTACCGTAGAAGAGGGAGTCGATGCACG
GTCCTGGACGTTGACGAGCTTGACATCAGACCCGGATTTCTCGTGCAGCGGCATGGGTAA
TTTTTTCCAGGTTTTCTTCAGGGAGTCTTCGAGTTCGGTTTGGGGCGGCAAGGCGGCGGT
GCTGTTCTAGTGTAGGAATAATGTTCTCCCCGCTCTTTCCCCATTCTGTTGGTGTGCTTA
TCACCGCGGGGGGAGTGTGGAGATGTAACTCTGGCGGGTCTTTCGGGATCCGGTTGGTTT
AGGTTTGCGGTGGATCTATCTGGATTCGGTCGTCTTTCGTTGTCTTCAGAGTTTCTACAG
GCCTGTATCGGTGTTTTCTTCTTCGAGTGGTGATTTGCTTTGTAGATCGCGGGCATAGGC
GTCTCCTGGTTTGCATTGACGACTTCTCGGCCGCTGCTTGTACAAGCTCTTGGGTTTAAA
AATAGTTTGCTCTGTTGAGGCGGAGGCCCATATGCGGCATCGAGCTATGCTCATGGTGTG
GCGTTGGTGGATGCAGGAGGAAGAAGACTTCGGCACCCTCAAGGATTTGATTCTAATTTT
GTTTTTCTGTATGGATGTGTTTGTAAGGACATGCGATGCTTAATATATGACCTTAGGCCC
TTTCACAAAATAAAGTTAGACGAAACCGTAGTTGAAGATTTCAGCTAAAAGTTCCGCTGC
ACGGGTGATAGCCTCATTTTTGACTCTGTGGTTGGACCAGCTAACATTGGCGTGTGAGCA
CCGATTCCTTCTTGAAGGGGTCGTGTGGGAGTTTTGGCCCTTTGTTAGGTCACATGTCGC
TTGAGCGGTGGATTATGGTTCAGGGTCGTAAGGTTTATGGCAAGATTGTGGAGATCCTGC
AGCCTCGGGTTTTCTCTTTATTTTTTTGTAAACTGGTTTGTTTGATTTTAACGTTTGGCT
TTGCTTGGCATTGCTTTTAATAATATACTCATTTAAGAAAATAGGGTAGACGAAATCAAG
TGGGTTGTGTCGATGGATGTAGAGACCTGGGGTTATCCTCATTTAAAATAGGGTAGACAA
CATCAAGTGGGTTGTGTCAATGGGGTGAAAATTAGTACTGAGGAGCTCTTGACTTGGGTT
GGCAAAATGATTGAATACTGGCTAGAAAATTTTCTAAGGTGTTGCATTAGTGGACTATTC
ATGTTCGGCTTAAAACTTATGCATTCATGCAGAATATACAGCTCAAGAGGAGAACAAAAT
CACATAGGAAAAATGGTTTGAATACACTAGTATAGTAGTATGTTATCTCATATGCTGGAG
GAGTTTCAATTAGGCGGTTGTTGTATTCTGTCCAAGCCGGCACATATGCTCTACATCACC
TCATGCTAAAAAGTGTTGTGTTCATTGCATAGGATTTATATGATGCGGAGTAGTTTATCA
ATGAGAAGAGCTAATAGTGTATAACCATGTCTATGAAACACATTTTATTGGCACTTTAAC
CTTTTTGAATTAGGTGGCATCCCATGATCTGTTGCTATCAAAATACCTACTTGTTATATA
GTTTCTGCTGGAAATGATTTTTCGTTAGGACATCAATATATGGCAGTACTGTGTGTCTTC
CTGAGACTGCCTTATGTTCCAGAATTACCAGAATGGAGAGCAATCTTACATTCATATCAG
CTGTTCGACACACTGTTTGTCCATCTCTTGTGACCATGAATATGATGATTCCACTGTTTC
CTGCATTCGCGTGGATAGGTACTTCCAGTTGAAGTACAACTGTAGAAAGGTGCGTGCTCT
GTACCTACATGTGAGTTGTTGCTGTTGTCTCCCACGTGTTTTCCTGTAATATAGTCTCTG
AGAAGCTTTTTGTAGGAAGCTGCAATGTAGTTTCTGAGTCTAATTTTTCTTCTCAACTTG
AAAACTGTGAAGTTGTAAACCTTCCATTGTCCAAGGGTAGTAACCAGTGCAGATCATGTC
CTATAAGTGGTTTTCTATGGTGGCTGCCACACCATTACTTTACAATTTCGGTAGACACGT
GGCATATCAGTTGAAACAGCTATCTGCTAAAAGCACCGGTGAAAGAGAAAGAGGAGGAAG
ACGAAGAGAGCTCCAACATGCATTTCTTGTTATGGAAGCAACATAAGCCATTGATATTAT
TAGAGCATCTCCAACGGTTCCTCACTAAATCATCCCCTACAGTGTATAGTGTGTTATTCA
AGTTTCCCCAATAATACTTTTCTAACTAGCAAAAGGCCCGTGCGTTGCAACGGATTTTTT
TTCCTAATTCCCAATGGAGATGACCATATTTTACTGCATCACTGAGATACACTATCACTC
GTAATTTCGTGAAATCATGAACAATTTAGAAATCATAACATTTTCTAAAAATCATGAATA
TTTTTTATCACTTATAGGTGATATTTGACAATGGGTTAAGGTGACAATTAAGCGACAATT
TTGCGAGATGGCCTTTGTGAAAAAAATAACATGTTAAATTTGAAATTGAGGTTTGAAAGA
TATGAATATTTAAAAAAATACTTTAATCTGTAAAATATTTGAGGTTTGATAGAAGGCTAG
AAAAAATGGGGAGTACCTTGGGTCAAACCCAGGTCTCCCGGACGGGATTGATATGGTGTA
GCCAATAGACTGGCTAGTGCCCTTGTTGTAGTCAAATGGCAAAAACGGTTGATGAACCAG
AAGCTAGCGGCGGCGATTTAAGGGAAAAGACGAATCGTTTTCCACTTATTAGATTGAGGC
CCTCCAACGATGCAGGCATGCTTCCCAGGAATGGAACGCTCTTAGGTGTGACCTTGAGAC
AGTCGGACAGTGAGAGGAGACGGAGCTTGAGCCGCTCCGCGGATGCCAACACCGTAACAC
CATAGTCGCTGACTATGCAGTTTGAAAGATCAAGCTCGGCGAGCTCATAGCAACTCTCGG
AAATGGCAAACAGACTTGCATCAGTTATCTTACTGCAGCCCTCTAGGCTCAGATGTGCAA
GAGAAGTGCTATGAACTTGATTTCACTTTACCTTCATCATGGTGGAATATGACTCCCTTG
CTTTTGTAGACCTTCCTTTCCGAAGCTTCACTATCAGCTTTCCAATATGAAATACATGG