morexGenes - Barley RNA-seq Database

Contig contig_159872
Source Contig contig_159872
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159872 (5380 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_159872

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21779	3	1651 bp	AK359456	Available	Available	None
CDS Structure of MLOC_21779

Contig Sequence (5380 bp)

>contig_159872 5380 assembly3_WGSMorex_rbca.fasta
AAAAGTTGTCAAAACATGTCAAGATGTGATCTAGTTTTGAAGATTTCGTCGAAACAAAGT
CAACGGCGAAAACGGATCATTGATCGAATTAACGGTTTAAGAGATAAAAGTTTTTGAATT
CCGATCATTTAGAATAAACGTGCCGCACGGGATGTTGAGAATGCGACGCTTCTGGATAGA
TTTTTCCATCTTAAAAAATAAAATTGGCATACTCTTATCCTATATACGTAAAAAGTTTAC
CGTGCTATCTTATTTATCTCAACATACAAGCATGTCACATCACCATACAATTATGGATGA
GATAAGGTCCACCTTCATATGCAACTATGCATGGAAAAATGCCCACCACCATATGCAACC
AAGCATACAATTTTTTCCACTCTATTATGTTTATATTCAACAAATATTTTCTAACCATAC
ATAACCAAATACTCTCAGTTCAGACAGTGTCCAAAACAGTTCAAAGCAAGCTGTCTGAAG
CGTCTTGTAAAAACAAACAGGGGGAGTACAACAAATTATATGTATTTTAAATTTTGGTTA
ATGTGTTATTAATCTAAATATTATATTCCATACAATCAAATCTAACTAAAATATATTACT
ACAACGGAGTGAGTAGTATTTATAAACAACCAGGTAATGGTTTGATTGCAATTATAACAT
AAAAAACGAGTTTATCTACATCATGTCAAAAAAACATAAAACAGTAGGAGGTTCCACAAG
GCATGCTATGGAAGAAAATGGTTTCTCTAAAAAATCATGGCAAAATGTATAATGTTCACA
TGGCAAATTCTACATTCCAAAAGAAAAAAAGTACACGTGAGAAGGCAAAATTTTGACATG
GCAATGAGAGACCGAACCAGGAACATTGTGCAAAGGATGCCAACGGAAAAAATAAAACAT
CAGAGAAGGCCAAACATAAAAGTTTAGACCCATTTAAATTAAAAATCTAGAGCTGTATTT
AGAGAAAAAAAAATACCCGGGGGCATGCCCCAGTGTGCCTACCCCTGGCTCTGTCACCGA
TGACAATAAATCCGATATTATACAGAGAAGTATTTACCATGGTATGATCACTAAGATTGT
CATGGTGTATACAATCACTCTATTACCAGAACATCGTGTTTCAGCTCCACAAACTATGTC
GTATCACACAACTATCTTCCAGTGGCGAAGCCACGTTGCAGCTGTGTAGTCATATGACTA
CCCAGGAAATTGGTAAATCAAGTCACTATAGGCAATGTATATTACAGTACTAAGCAAACT
ACTTCAGGAAGCTGACTACACAAGCTAATGTGACATCACAAATATTGGATCTTGACACCG
CCACTGCTATCTTCGGCATCTCACCTTGCACCCCTCTGAACCAAGACTCCTACACACGTA
TAACTGTGCGGCAAGCTAAACAATTACATAAAAATACATGCAAAACTCAAATTAAACTTA
CAGATACAAAATGCTAGGATAAGTGCTAACATGCAGGTTTGTCTATACTAAAAAAATGAT
ACACCTAACACCTAAGGGCACAATCATGCATAAGGGATCTAACTTAGGGATGAGATCCCC
AACTAACCACCCACTAATCCCCTATGAACTTCTCAATGGGCCTTGGTGATAACCGCATCA
TTCTGTAGTCATCAATTCGTAAGTATAGCATTGCTCTGTTTATACTATACAATCGACTGC
TTTCAACATTTTCAATGGCCACTATCTGTACACATCTTTGAGGGTACTAAAGCTTTTGAT
ACTACAGAACACGCTCTTGTGGTGATTATCAACTCTACTCCCTCCGTCCTCAAATAAGTG
GACATTTGGTATTCAAAATTTGTCCACACTACTTCTATCTTCACAATGCTCTTCAAAGTA
GAAAAAATATGCTTCTCTCCCATCACACGAGAATCAAGACCAGTAACATCCAATACATGG
TCTCCTCACTTTTTACATGAATTTAGCACTTTGGATGTGTGGTAATTAAAGAGAGGGATG
GTGGCACCTTTCCGTGCATTTTCTGCTTCACTCCATAATTTATTTTAAAAATCTATATGT
CCACTCATTGAGAACAAAAGGCAATAGTTGCTACCAGTTGTCACCACTAGACATGGATGG
TAATTGTTGTATCCGCGATCTCATAACGGGAAGATGCACCACCACTTCATGAATAATTCC
ACGTCGTCGGCATCCTTGTGGATTGTAGAGGGGGCGTGTTTCGCACGTTCACGTCGAGCG
GCAACATTCGGTACTCGATGTCGAGGTCCCTCAAGACTCTAATCATCTCTTGGAGCACAA
GTTCCCTCCTCACGAACCTCATACCCATGTCCTGGAAGTTAAGCGTGTGTCGTAGCCATA
TGGATACTTTCAGCTTGTTGGTCTCATCTACATCCCGGAGGACAACCATCGCACCAGGGT
ACCAATGTTCCTTCTTACTGTCAATGTAACTGGATCATCGTAAGGAAAAAAAAACTAATA
TTAGTTTGATGTGGTAAGACCAGCAGCAAATGACACTACAAACTACAAATGTGTTATGTT
TATGCCAATTTGTGAACATATATGAAATTGAGACGACCGAAGCACGGGTACGCACCGTAG
TATTCTTTCCTTCATGAGCGTGAGTTTTTCCATAGGAGTGGCGACATGAATAGAGAAGTC
AACCCCTTCTCCCATATCAGGACTCCTATAGAAATTGAAAATTGGTTTTGTGGCCAGTAC
ACTGTTTGGATAATAGATCTTTAGGTTATCATAACGAAGAAAGACTGTTGTCATGATATT
CATTTCCTCTACAACGACCTAAAATTCAAGTGCTCAAACGTGAGTTAACGAATTAATGCA
ATGTAATTTCCAATTAAATAAATAAGTAGTGCCGATCGAGAATATATTCATTACCTGAAC
CTCTTCAATTTCACAGCGGTCACCGACATCGAAAGGATGCATCACGAATAAGAAGATAAT
TGCCTCAAAAATCGTCTTCAGTGTATTCCCGAATACAAATACCGCCACAAGAAGCTGTGA
ACTGAGGAAGACAAAGAAATGCGTTGTCGCTACGCCGAGAATAAGAAGCCAGAGAGCGGA
CACTATGAGGCCAACAACAACATTGGCCATCTGGTTGAGCTTGTTAACTGCTGTTTTTGT
ATCATTAAGTGTTAGGGCAAGAGCTTTGCGCTCTCTAAATGCATTCACCTGCAGAACGAA
GTTCCATATGATATAATGTTAGAGAAGGCATCTTTAAGGTCGATGCAACTTAGTAGATAG
TAGAGTACATAATAAGATCATCACCACCCAGTTCTTGAGAGACTTCTTGCCGACCCTACA
GTGCTCCTGTGCCCCTTCAAAAAGATGCATAGCTTTGATGGCTTCCTCCTGCTTCATGAA
GCGCATCAAGTCTGCCAAGTATATGTGCCTGCATTATTATTTGTACATTTATTTAAGATC
AAGAGCCAGAATCTGTAAATTGTCACTGTTCTTAGAACTACAACATTCGAAAATCCCAGG
GCTTCGGGCATTTTGTAATTGGCCCTGAACGCCACAATGCGATATAAGTCTAACAATTAA
CATGCTGTTCATATAATTAAAGAAGTAACAATTAACATGGAGTACTTTATTTGGTTCATA
TTAATTATCGTTGATTTAGTATACTAACATAGGTGTACCACTTGAGCTCAAATTTCCTAC
ACTACACTAGAGGCAAAGAACTATCTGATTTAGAGTCTAGACAATAGGAATGAATATGAA
ATGAGTGTTGATGATCTAGTATAAAATTTATACTAGTTTAGTATAAAATCTGCTGCACTT
ATTTTGGGACAGAGGGAGTAATAACTTGTAAAGAGCTTATATAGTAAAAGATATTATTTC
TATAGCTAAATAATTGTAGTTGTGGAAAACTAGAGTATAAGGATGCTAGCAAAGAAATGC
TCACTTGGAACCAGGCTTGGCTACGTTATGAAAGATCTGCTTGGCGGCCAGCTGCGCCTC
ATCTTCAGTACGAATCTGCGTCACCGACTCGCCCCCTTCCCCTGTTGTTGCCTGCTGAAC
TTGCTCGTCCATTGTGGCGAGCGTCTCGAAACGAACAATCTTCATCAGCCTCTTCATGTT
CCACGCCGAGACGTTTCTCTGGTTGAGCCTATGGAGCTTGTCAATGGTGATCCCTTCCTC
TGCCTCACGCCGCTTCTTCTCCTTGGACAGCGGGTTGATTCCGGCTCCCCTGGAGATCAG
ACCCGAGACCCGGCGGGTGCCGTTTAAGCTTTGCCCCGACAGGTTCTTGGTTGGCAAGGC
GGGGTGCAGCTCTTTCGGGATGTCCGCGCCGGCGCGCTGGAGCTCGCGCACCTCTGCGAT
CACGTAGTCCTCGTCGACGAGCTGCGGGCCGGAGAGCGTGTCGATGACGTACTGGTTGAA
GAGCGCGTCCTGGATCCGGTCGAAGTAGGTGGAGACATGGAAGGAGGAGGCGAGCACCTT
GAGGAGGAGCGTCTTCACGAGCCGGACGAGCGTGGCGGCGAGGAAGCAGAGCAGCACCTT
GGTGACGTAGGGCAGCACCGGCGTGCGGACGTGCTCCACGAAGAGGAAGTGCCACGAGGC
GAGCACCATGCCGAGCCAGAGCGCGTTCTGCGCGGCGCCGCGCACGCCGTAGACGAAGTA
GAGCACGCGCTTGCGCAGCACGAAGTTGCGCTCCACGCACAAGACGGCGATCCGGATGGC
CCAGCCGGAGACGAGGCGGCCGCAGATGAGCACCAAGACGAGGAGCTCCCACTTCCATAG
GTGCAGCTCCCAGAGCCGCTTCCGCGACAGGGGCCTGATCGCGAGGCTGCACGCCAGTGC
CCCGACGATGAGCACCAGGCTCACCCACTGCAGTATGGTGAGACCGTCCAGCTTCCCGCG
GTTGAAGTCGTCCGGGATGTCGTCGTCGATGAACGGGTCCTCCTCCTCCTCCTCGATGGG
GCCCGACTTGCGCCACTGGCCGGATTTCCCGGTCACACGCCCAGAAAACTGCCCGGACTT
GGGAGGGCGCAAGGCAGCCGACTTCTTGCGCTCCTCGTCGGCGGCCGCGGGTGACTGCGG
CGGCGGGTCCATGAGCCGGGATCGCGTCTTGGCTCGCAGCAATGGTCTCGGTCCCGCCGG
AGTGGGAGCGGAGGTGTTGCGTATTCCGTCGTCACCGGCGCGCCTACGGCCGCCGTCGGC
ATCGGAATCGGAGCCCGATGAAGAAGAGGACGAGGACCTCTGCCGGCCCTTGAAGGAGAC
ACGCGGCGCGTCCCGATCCCGGGAGTTGGACGAGAACGGGTGTGAGTGTGACGACCTCCC
GATGTCGTCCATCTCCAGGTCGAGGTCGAGCAACAGCTCGGCCCCGGCCGCCTTCTGCTT
CCGGAGGAAGTTCCCGATGAGGCGCGTGGGCGGGTCCTCG