Map Locations of contig_159786 (5059 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_159786

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_21698 1 1540 bp AK356189 Available Available None





CDS Structure of MLOC_21698






Contig Sequence (5059 bp)

>contig_159786 5059 assembly3_WGSMorex_rbca.fasta
AGGTTCCAAATAGGGAAAGATACACTCTTGGGGCATTACACTCCTCTACCACATGAACGG
CGGGTTGGTGGATGTGGGGAAGGGTACTATAATGAAGCCCAAGGATCGCCTGTTCCACCG
CCGGTCGATGCTCGATAACGCCTTAAGGGTCTGTGTGGAGGGTGTGATAGCATGCTATGA
GGGTTTTTCTCCTCCCATACAAACTGGTGGAGAGGACAAGAAGACCCCGATGCAGCTTGG
CCAATGCAAAAATTAGGCGACCATGTGGCCAAAGAATCTTCTTCGTCTGGAGGTGGTCGG
GAGCACACCAACAGGACCTCAACAAGGTATGAGCAAAAACCCACCTACACAATTACGACA
ACCGCATGTGTTGTTGGGTGAGAGCGAGAGACACAAGGAAGGGGCAACCTTTCCGGCGGT
GGATGACGTCGGACCCATAGAAGATGATATGGATCATGACATGGAGGACGATGACCATCT
CCAGTATCTCAATGACGACTTTGACAACGAAGTAACTATGAGTCAGCCATATGAATATGA
GCGTCAAGAAGCGATGCATGATGCACCGGAGCCTAAAAGTCTTCGGGACTGGAAGAAGTC
TTTGTTCATGCAATCCTTAGAGGACACGCCTCCAAATGTCGCCTCAACCCAAGTTCAACT
AAGCCAAAGTCGTGCAATGTTGAGCCCAACAACACTGGGGGGTGGGGTCAGGCAGGGTCT
GACAGACCCACCGGCATGTGAGCCCACCAAGAAGATGTAGAGGAAGAGACGGACAACGAA
AGGCTCTACTGCCGCCAAAGCTCTCGTAGTTGCTTGTAGCATCCAGTCGCCTTTGCAGAC
CCGGGTTGCGGACAGTGTATCGATGAAGGGTGCGTCGTTTCTCCATGCTGCATGAAAGAC
AATGGTACCAGCAGATGCGCTAGCGGCCATAACAGGGGGTCTCGGGAGACTTCATGACCA
TGTGTTGTCAAAAAAGACAAGCCTTCTCGCCTCGGATGATCCAAGATACCCGCTATATAT
AGTTCATGTGCCGATCAGTATCCACATGTACGTCCACGAATGCCCCGCGGACCTGTTCTT
TCTATGATTTGAGTACATCTTTGAGTTGTTCCGAACGAGGCAGCTCGATTTTACGTTCGT
CCGCCTTTATGTGTTGCATATGAACTACATCGCCGGGAGAGAGCAAATCAGTGACCTTGC
GGCCGCGGACTCGTACTACTTGCACGAGGGCTTCTTCTTAATCAACGAAGCCAACCATCG
ATATGTGAGGGAGTAAACAGAAGAGTTCTTGGTCAACCATAAGGACAAGGAAACGATTCT
CCTACCTTCTCATCCCGGGTAAGTCATCTGTGGATAGCCACTATAATACATACATCCTTT
CGTGCATTTTCAATCATTACTTCGCACACATGAAGGCTAACTTGATTGTGTATTTATTTT
GCGTAGCGACGAGCGTGTCATTCTCCTCGTTCTTTACCCGTATTTCTCCCATGCTCTGTA
TTTGGACCCGCCCAAGACCATAGAGAAGCAACATTACACACATATAAAGGTTGTTCTGGA
CAAATGTCTCTTTGGCTTCAACATGTGGGGTGGCTACATCCAGGTCAAAAAAACAAATAA
TGGAGGGGTGTGCTTCGGCCATAAGACGGCCATAAGACTGACTTCTGTTGTGTCTGACGA
CCGACAACAAGTAATAAGGATGGATTCTACGTCATCCATCACATGCTCAAGTACAGAAGG
GATGTACAATCACTTCGCATGACATCTTCATCCGATGCCCATATGCAGAGATGGGCCGAA
AATTTAGGAACCATATCGGATCATCAAATCCGAAATGAATTCTACCGCATCCAGTAGGAA
ATTGCGTCGATCATCATGAAAGACATCCTCGATGAGAATGGAATGTTCTACGACGTCCCA
ATATCGCGGGTTGGCGTCCGAGCCCGCATAGCCCTACAACGTCAGAACTTGACGCCTTTC
GCAAAGCTTGGGTGCATCCTCCCGGATATGGCCGGATGAAACGAGTACATTGGTTGAACA
ATGTTTTCGTTAGTTGTTACTTTCTCTAAATGAAACTTTGGATGTCTCTGTTAACGGCCC
ACACTCTATTTAGTTAGTTTTGGTACGATGAATTTCGTTAACTATGTTTATTATATGTTG
CTTCTATTTGCCAACTCTTTCTCTCTGTGTTACTAAATATATTATGTTGCATATTATTGT
TGAATTCACTATATGATATATGCATCTCTGATTGGTCGTTAACTATGTTTATTATATGTT
GCTTCTATTTGCCAACTCTTTCTCTCTGTGTTACTCAAGTATATTATGTTGCATATTATC
GTTGAATTAACTATATGATATATGCATCTCTGATTGATATATAGATCATCGATGGTGAAG
AAGTGGTATGTCATCTACATAGGGAGGATTTTGGGAGTGTAGGATGAGTGGCCAGAATCT
CAGGCCCAAGTGTACCGCTTCCCGCGCGACAGCCAAAAATGGTTTGATAGCTGAAGCAAG
GCGGAAGTGTAGTTTCTTGAGATTCACACTAGCGCAAAAGAGGAACCGGAACCGGCGCCT
CAAGAACTATTACATAATCTCACTTTTGATCATCATGATTGCTCTTCTCTTCTGTGCGAT
CATATCATAGTTTACGTAGATGGTGAAACATGAGTATGTCACCATGTAGTTGCATATATT
TGAGACTTCTAATAACTTGTATCGAGACATGTGTTCGACCATAAATGATGATAATGATAT
GATGAAAGACTATGTTGTAGCACGTTGTTGATGATGATGATGCCAACGATGAGACATTTT
TGTCTCATATCTTTTCAATGAATATGCATGTTCTTATTATATAAAAGCTGTATAAATACA
GCGTAAAAGCATAGAAAAAAACATAACAATGACAAGGGGCAAAGTTTTACCAGTAGCGCT
TCACCTTATCTGGCTTTTTTGCCGCTTCTTTTTTAATATATAATACGCATGCTCATGCAT
ATTCGAGAGACAAAGAAAGCGATGCGCCCTTACCAGTAGCGCTTCACTGAAACAGGCGCT
GCAGATACATAGCAGTGGCGCCGGATAATCCAACACTACTACTATGTAAGTTCACCAGTA
GCATTGGGCATAAATAACGCCATTGCTAAATATTAGCTATAGCGTCCTACCAATAGAGTG
TGCACCAGCGCTACTAATAGGGTTTTCTCTAGCAATGGCGTATTATGCTATTGCTCAGTA
ACTTTCTACCCCCAGGGGTCCAGTAGTTATACTACATATGAAGTAGGGTCTTTCCCTGCA
TCAATATAGGTTATTTTGGCAAGAATGGTATACATAATGAATACACATCAAGCTCGGACT
TATCTCGGCTCAAGCTCAGTAATCGAAACTTCGTTTGGTGACATAGGTGATCTGCTGGTA
GGATGCGAAACTCCTGGATATGGATCTGTGTGCATGCCCGAGTAGTTCATGCCACTCTTT
TGGATGCAAAATGCTGGCCTAGATGGAGCTTGGAGAGACACAGTGCTGCTGCTTAGCATG
ACAGTCACAACCGACATCATCGGTCTATCCGCGGGGTCTTCTTGAACACACAGAAGTCCG
ATGTGCGCGCACTTCAGCATCTGGTCTCCAGGAGAATGGCTAGTCATAGATGAATCCATG
ATCCCTACAATTGTTCCCATCGTCCAGTGCTCCCAGACCTGCATTCAGTAGATGGATTAT
TTCATTACTATTATTGTTATTACAAATTGTAGCTTTGCCTAGAAGTCGAAGTTTTTAATA
GTCAAAAACCCAAAGTACTCACCAAACTTAAGAGGTCTACAGCTTGCTCGGAGTCATATG
CGACACTGTTTCTTTTTCCAGTGACGATCTCTAAAATCAAGACGCCGAAGCTGAACACGT
CTGACTTGATAGAGTAATTCCCACGCATAGCATACTCGGGGGACATGTATCCACTGAAAT
AACAACATTATGTTATGAACTCATGCACTCTCAGATATCTTATAAAAGCAATTTTATTAA
AAAAAAATCTTATAAGAGCAATGTCGCCAGCACTTACTAGGTTCCAACGACACGGTTGGT
AATATCATGGGATTGGTCACTGCCAAATAACCTTGCTAAGCCAAAATCTGAAATCTTAGG
ATTAAAGTCAGAGTCTAAAAGAACGTTGCTCGCTTTGAGGTCCCGGTGAATTATCTTCAG
CTGAGAATCTTCATGAAGGTATTGTAAGCCGCGAGCAATCCCATTCACTATCCTAAATCT
CTTCCCCCAATCTAGCTGACTTCTCCTATCAGGATCTATAACATAGGAAAAGAAATATCA
GAACTCTACACAATATATTTTAGTTATTTGTTTCACTGTTGCAAAATGGTTTGGTGAGTT
GCCCACCAAAAAGGATGGTGTCGAGGCTTTTGTTGGGCATGTACTCATATACAAGTAACT
TTTCTTGTTCCTCCAAGCAAACACCAAGAAGTCTCACTAAATTCTTGTGTTGAAGCTTAG
CAACCAAAACAAGCTCATTTTTTAGCTCCTCTATCCCTTGGCCAGAACTTTGTGAGAGCC
TTTTAACTGCTATTTCTTCATTGTTAGGAATGATTCCCTGTACAAATGGAGATATCTATT
TACTAGATGTGGAATATACAGAATAAAAATCCTTTGTGAAATGATTAAATTAGCACCTTA
TAAACCACACCAAACCCTCCTTCACCAAGTTTATTGCTTTCATCAAAGTTATCTGTTGCG
GCTCGTAGAGTTGATAGATCAAGAATGAGTGAATCGATACTCTGTATGTCCTCTGGATTT
TTTGGATCTATCATAAGAGAAAAGACATTATAATAATGGTGTAAAGCATGAATGCAACTA
TTTCTGAATGCCAAAACATTAGTTTCAATTGTATAGATCATTTTTGAGAAACTGATTCCA
TTTGTGAACAAGAAGAAACTTATATGTTTAACCATCCCTCGCGGGGGGCGCCCCCCCCGG
GCCCCCGCGGGGGGCCCCCCCCCCCGGGGGGGGGGGGGGCGAGGGCCCCCTCCGACGCGG
GGCGGACCTTCCTGCATGC