morexGenes - Barley RNA-seq Database

Contig contig_159745

Source Contig contig_159745

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_159745 (3757 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_159745

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21670	1	163 bp	None	Available	Available	LOC_Os10g38229.1, FRAME:+2, EVALUE:5e-17, 13110.m07791 protein photosystem I P700 chlorophyll a apoprotein A1, putative
MLOC_21671	5	2259 bp	AK370774	Available	Available	None

CDS Structure of MLOC_21670

CDS Structure of MLOC_21671

Contig Sequence (3757 bp)

>contig_159745 3757 assembly3_WGSMorex_rbca.fasta
AGAATCCATGTTGAATCACCACTTAGCGGGATTATTAGGACTTGGGTCTCTTTCGTGGAC
GGGACACCAAATTCATGTATCTTTATCAATTAACCAATTTCTTGATGTTGGGGTGGATCC
TAAAAAGATACCATTTTCTCATGGATTTATCTTGAATCAGGACATTGTGGCTCACTTTAT
CCTAGTTTTGACAAAGGGGCATCCCCTTTTTTCACATCAAATTGGTCCAAATACACATAA
TTTCACCGCTACTGACTGAATCCACAGCTCTGAAATGAATGAAAGACATCCATAGCTAGC
TCTTGAATCAAAGTAGTAAGCTATGTATGTCCAGGATACACAACAACAGTGAAGATATAC
AGCAGAGTAGAAAGATGTTTTCACTGCATTCATTCATTCATATGAACCATGTCCACAAAA
TAGACAAACCTCCAATCCAAACACCAACAAAAAAACAAGTTATAATGTAGTAGTAGCTCC
TACTACTAGTGAAAGCCAGTGGCACTCTCTCTATCTGTCTCAACAACAAGAACCGTTGTA
CTACTCATCCTTCCATCCCTCCCTCCCTCCCTATGCAGAAATTAGATAGGATTCCATCCA
CTCCACCATCCCATCAGGATGATTAGGGGCTGTCGGTGATGATCCCCGACATCATATTAT
TTATCTGCCAAAAACACACCCACACATTATTTTCATTACCAAATTGACGACCACAAAACC
ATCCATCACCTAAACACAAGCTTGCAATACCCAGGGAATGAAGAAATACATGTATATCAC
AAAATTCTATGTGAACAGTGATGAAATATTTGACAAACAAACTATTCTGTTGTGCAAGTA
CCAGTTAGTAAAACTGGGACAGTATAAACCAACCAAATATATATATCAATAATATCGATG
AATGTATGCATGCAGTAAAGTGTCAGTACCTCCCTTTTGTTCATCCCAATCACATCCCTG
AGATCGTCTATCTGCAAAACCATGCAACAGGGACGGATTAGCTCATAAATAACTCCGCCA
TTAGTTTCTGTGATTACTTGTATCTTCCTACTCAATTACAACCACCTACCCCTTTGAACA
GCTCCGGCGAATGCTCGCGAAGCTTAATTATGTAATTGGCTCTTTTCTCTCCGATGCCCT
GCACATTCACAGCGTGTTACTGAAAAGAACAAAAAAACAATCCTGATAGGTAACTGCAAC
AACAATCACTAAGATCCAGAGCGAGAGCAAACCTTCAAGCTCTTTAATTGCTCCCTGCGA
TGGACATGGAAACATGCAGTATTAGATAAGAAGAAATAGTTCCCAAATGGTTTATTGGTT
AAGTAGGATCGTACTCACTTGTTAGCGCTGTTGAGAAAATTCATGCACTCCTGAACTATG
GATCTCTGTGTTGAGAAGAAAAAAAAAGTCTTCGTCAAAAAGTCAATGATGTAGAGATAT
GATAAGGATGTAGCAGCAAGGTGTGAACTTGTAACCTTTATCCCGGTGCTTGGAGTCTTG
AATGAACTGGCTGGATGATCTGCTGCTTGCTCAAACTTGAGGTGTATCCCAGGAGCCTTT
GTATCTGCTGCTTGCTCAAGCTTGAGGTGCAAAGCAGGCGTCTTTGGTTCAGCTGCAGCA
TCTATGTTGGTCACACCCTGGACATTTTCCATGACCACTTCTTTTGTTGTTTCAACAGCC
ACTTCTTGTGTCGTTTTAATGGCAACTTCTTCTCTCGTGTTAATGGAAACTTCTTCTGTT
GTTTCAACAGCCACTTCTTGTGTCGTTTCAACAGCCACTTCTTGTGTCGTTTCAATGACA
ACTTCTTGTGTTGTTTCTACACCCACTGCTTGTGTTGTTTCAACAGCCACTTCTTGTGTC
GTCTCCATGCCCACTTCTTGTGTAGTCTCCATGCCCACTTCTTGTGTCCTTTCCTTACTC
ACTTCTTGTGTCGTCTCCATGTCCACTTCTTGTGCCGTTTTCATGCCCACTTCTTGTGCT
GGTTCCATGGCCACTTTCTGTGTCTTCTCCATGCCCTGTTCTTGTGTCTTTTCCATGGCT
ATTTTCTGTGGCATTACGCTCAATGGACGAGCATTAAGAAGCTTCAGTGAGTTTGATATC
TCTCTCAGCTTGTCGCTAATCTTTGGAGTGTTCATAATTGTTTTGACTAGAGTCTTCTCG
ACAAGGGCATCTGTGAGCGATAGTTAATTGTCAGCTATGCGTACATCCAAAAAATTGCCA
AGAAAATAATACCCATATTTGTGTTATTACCAGGAATGTTTGGAGAGCAGATTTCGCCCA
AGTCAATAGTACACGAACTAGCTGCATCCAGAGCTGACGACGAATAGTCCTGAATAAAAA
AAGAGAAAAGGTTTGTGTTTGTTTATGAGAAACAGAGCTACTAAAACAGAAGCAAGTCAG
GTATCCTTCATGTGCACAGGGCTAGGGCTATGTACCTCTTCCTCCATACCACTTGAGACC
ACCTTGTGTATTTCAGATGATGCAGTATCCAGAGCATCGCTTGTTTTATCAAATCCCTGC
AATATTGTGTCCAACCACACGGCAGCCATTACTAACAAGTTTAACAATCTACCTAGTGAC
ACTATACTACCGGAAAGAAACCAAAGTACCTCATCTGTAGATGGGGCATCGATTGCCATT
CCACTTGAGACCACCTTCTGTACTTCAGATGGCACAGTATCTAAAGCATCGCTTGTTTTA
TCAAATCCCTGCATATTGTGTCAAGCATATGGCAACCATTATTATTAACACAAGGTTATC
AATCTACCTAGTGACACTACACTACAGGGAAGAAACCAATGTACCTCATCTGCTGATGGA
GCATCAATTTCCACGCCTTGTGACGATAGTACCTCCTGTAGAATAGTGAGTGGAAACAAT
TTAAATAAAGTAAGTGATAGCCAATCAATCATGCACAAGTTCAATCCGTGCACTAACCTC
AACTTTTGTTACTGTTGCTGGTGCAATGTCTTCCTACAAAATTCATAGGTTGGAATCGAT
TAGTTAGAAACATGAGAGTGGCAACTCTTGCTCTTAACACCTGCATATTAACCTGCCCGC
GATACTGCAACATTTTGAGATATATTTTTACCTTTGCTGAATTGGTGCTTGGGCATAACA
AGGCACTGCACAACAGAAGACACAGGTTATTCATGCAAGGAGAAGTTGCACAAGCAATTC
CCTGGAGTTAATGAATGGTGTGGTACCTTCCACTCATTGTAGGTTTAGCATCCTTTTGCT
TCCATTTGGTAGAAGTAGATAGCGAGCTGTCAGTTTTCTTTGCTGAGCGCATGATTACTT
GAGACCTTTTACGGCATAAACAAAATATGCACAATTTTAGTCAGGTGCCAAGCTCAAATC
CATCACCAGCCTTTTGTAGGGTTAACGAACGAACGGTATAGTACCTTCCACTCATTGCGG
GTTTACCATCCTTTTGTTTCATTTTGGTTGGAGGAGAGACTGTGCTTTCAGGTTTTTTGG
CTGAATGCATGATTGGTTGAGACCTTGTAAGAAGTTATAAAAAGCAAACATTATTAACAC
AATATAAATCAATTGCCAAGCTCAAATCAATTTGCAGCCTTCTGAAATGAATGGTGCGGT
ACCTTCCACTCATTGTGGGCGTAGCATCCTTTTGGGTAATCTTGATAGGAGTGGCGAGCG
AGTTGTCAGATTTTTTTGCTGAATGCATGATTGGTTGAGACCTTGTAAAAAATTAAAAGC
AAACATTATCAACACAATATAAATCAATTGCCAAGCT