morexGenes - Barley RNA-seq Database

Contig contig_159588
Source Contig contig_159588
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159588 (8043 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_159588

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21520	2	1252 bp	AK366316	Available	Available	None
MLOC_21522	1	289 bp	MLOC_21522.1	Available	Available	None
MLOC_21521	1	365 bp	MLOC_21521.1	Available	Available	None
CDS Structure of MLOC_21520

CDS Structure of MLOC_21522

CDS Structure of MLOC_21521

Contig Sequence (8043 bp)

>contig_159588 8043 assembly3_WGSMorex_rbca.fasta
ATTTATGATCAAATTATCTATGAAAAACTAACGCATGCCCAGTCTCCGTCAACGTGTCAA
TTTCTGGCGCTGTTGTATGTTGCCGTAGCATTGCCCCACATGGAAATGTGGTGCGCCCTA
ACCCCCTGGCTTGTGGGATGGCCGTATGGGGGCCATACCGACCATCTCAATCTCTTCCTA
AGCTTCTAGGGTTCCCTGTTGCCCAAAAAATCATATTAAATTGGCAAGTGATTTTGATTT
CCATAGATATTAATTTCCCGTGAAACCAAAAACAAGCTGAAAACAGGAATTGACACTGGG
CACTATATTAATAGGTTAGCACAGAAAATTAATATAACTTGCTATAAAAAGTAAATAAAA
TGATAATATAATAACATGAGACAATAAAAAATTATAGATACATTTGAGACGTATAAGGTC
TTACAAATATGAAGGGGTCAAGGTGGCATCACAACACTCACAAGGCAGTCATTGTGGTCA
AAACCGCTTGACTAAGTGAAAATCAGATGGTGGGTGATTTCTGAACCATGTGGTTAGTTT
GGGGTGTGAATAGATCGATTTTGAAGTTCGAGGGTTGAACATTAATCTAAGTGGTTAAGT
CCGGGATAGTAATGTAGATCTTTCTATTTTGACTTCCTACATAAACGACTTCTTTTAAAA
CAACTTTATTTATTAAAAATAATAGTTACATTGTTTATAAGAAAAGATACAATATCACTC
AAAGGTTCCCCAAACAAACGAGAAGTCATCGCAAATCTAGACAACCTAACAAGCTCATGA
TCATTATATTATCCTCTCTATTCAGTGTTCAGAATTAGTTATAAAAATCACAAATAATAT
AATAACAATAATCAAACACAGCCGCAACTACTCCCACAAATCGTCCTCGTTCTTCATAAT
TTTCTTAATCTTCAAATTATTAGAATTAATAATGAGGCGTTTACAACCGCCTTCTACGAA
GGGATATACCAAATCTGATCCTTTGATCCAAACCAATGCTAGAAAAAGCATCATCAGACT
AGCGCATAAGTTATAGTCTATGCAGTCGGGGTGACCCGAACCTCTGGATCCAACAACGAA
GATAAATCGAGCGATAATTGCCATGACGCATGAGAGGCGGCGGCATGCAGGGCGCATGTT
GCGCCATCTTATCCTCCCCTTCTTTCGGCGAAGTATACATTTACGTTTCTTTAACTTTTA
TCCAATAGTAAAAATGTATTTATTTTCATCACTATCCAAACACAAAAATCTTTAACATAA
AACATCGCCGAGTTATACATGTTAACTTCTTACACCATCTAGCATATCATCAGACCCACA
CATGCAACATGCGTGACACATGTCGCGTCATCTTATCCTTCCCTTTCTTCGGTCAAGCCA
CACGTTTACATTTCATTAAATTTTTATTCATTAGAAAGCATACATTTCTTTTCGTCGCTA
TCCAAGCATAAAAACCTTTGACAGAAAACATCGCTGAGTCACAAATGTTGACTTCTTACA
CCGTCCTTGATCCAAAGCCCATTAGCGAATACAGTCATACTATATCTGTGCGACAGGGTG
ATCCTTAAAAAAGAAAAAGAAAAACTGTGCGGCCGGGATGATTCGAACAACCAGATCCAA
CGGCCGAGAACAATCGGGGATGATCCCCGTGGTGCGCGAGGGGGGCCGGCGTGCGAGGCA
CGTGCGTCGCCATCCTATATGTCCTCTCCCCCCTTCCTCCGGCGAGCGGCCGGTGGTTTC
CTCAGAGTCCGCTGAACTCAGCACGCGCGCGCGATCTCTAGGCTCTTTGCTCGCTAACTT
AGACGTCGGTGCTACTTGGTCAGCCAGTGGTGGCGCGGGAGTGAGTAGCTGCGGGAGGCG
GCGATCTGGGCATGGGGAACGCGAGCGCCAGGGCTGTGGAGAACGGCCACGCGGCGGCGC
CGATGGAGCAGGTGACCCCTGGCGGCGGGAGCTCCGCCGAGGCCGCGGCGCCGCCCGACG
CCGTGATGCGGGAGCTTCCTCCTCCTGTCCCCTACGTCTTCGCGCCGCAGGTGATGATGC
TTTTTTTCCTGCCCGGAATGGCGAAGGGGGAAACCCCCATCTGGCGTTCTTGATGTTTCC
TTTTCTTTCGGGATGGTAGAAATTCTTGCTCTGTTGCTGCTGTTAAGTGTTAGCAATGGG
TACTTGATTGTTCCATTCCTCCTCCTCGGCGATAAAAAATACAGTACTAAATAAATTAAT
TACTCGCGACGAAGTTGCTTCTTTCTGCTGGTATGTTGATTATCGATTGTTTTAGCATTA
ATTGCGAAGTTAGTCCTGCAAATTCTTGAAATGGCAACTTGAGTTGTAAGGATGGCCAGT
GACACAAGTTTTAACTCGGAGATGTACGGCTGAACTTCCCACTTGTAGATTGTTCGTGGT
ATCCTTAAAGAGTGGCTCTTGTTTATGATGTAGCTAGAACATGTGTATGTGCAAGAAAAT
AGTTTTGATGAAGACGAGTTGGTAGATTTCGTTTCCTTGCACCTGGATTCTGCAAATGGA
TTTGGTTTGGTCTAGTGGGCAAGTTGGTCCACCTTTCACGCATGGTGCATAGCATTACTT
TATACTCGATAATACCTTTAATTTTCCTCGAACATTACGCAGTATGCGAGAGATCGTTAC
AACCTGATCTTATTTTCTGGATTATGCAAACGGATTTCGTTTGGCGCAGTGGGCAAGTTG
GTCCACCTTCCACACATGGTGCTTAGCATTAGTTACTAATTTTCCTCGAACATTACGCGG
CATGCGACAAACGGTTAGCCCGCTCCGACCTGATCTTATTTTCTGGACGGTTTGTCTTGT
TGTGTGAACTATACCGTGTGTTAAGAGGTTAGTGCAACATCGTAGACCATTTTTTACTTT
TGGTCTTGATACTGGGATAAACCCCATTCAAGAAAATGTATGTGACTATGTGGGGCATCA
GTGCATCATGCTCAACACATGTGTTTAATGATAGGAACTAGAACTGGAAATGGAATCCTT
GAACAAACTGATAGCAAGAACTGTATTCAGTATTGCTTAAATATAATGAGACGTTCAATA
GTACATAGTATTTCAGCACTTGGTAAGGTACACAAAAGAACACGTGATCTGTATTACCAT
CACATATGGTTTTGAATATCATATACATTGATTTATGGTGGTATTTCCATTGTTGATTCA
CTTACCTACTGAATATTGTCTTTGATGCTGTCTGGCCCAATATGATTATTGCCTTAAAAT
AGGAGTATATTATGCACATTAGCACCTTATTTGATCAGCAACAGTCCGTATCCCATGAAA
AACAAAGCACCCGGCCCCTGTATTACTGTATTAAGCTGCTCTGGAACGTTGTAATCCTTT
CACTGTATAGTAGATTTGCTATTGGCTTGATCAAACTTTGGCTGTAATATGGTAGTAGGT
CGAGAAAAAAAAGGTGCTAGTAGGTTTTTTTCCTGAAGTTCATTGTCGCAATCGATGGTG
ATTGGTGAACAATGGGTTTCCTGCTAGCGCGTCGAACCTGCTTTCCTGCCTTCAGGTCCC
TTCTCTCTTGTAAGACAATGCTGCTCCTATTCAAGTCATTGAAAGGCGAAGATACCAGTT
GGAAGGAAAATAAGCCTTATGTTAATATGTATAGATGGCAGTCAATGTTCTTTCGTTTCC
TTTAGAATGGACATACCAAAGCATCCAGTTTATTACTACTGAATTACTTTTGACCTATGA
AACACCATGTGTGTTATTGACCTTTCAGATAATACCGTGAGATGTGTGCATTGGTTCATG
CTTCAGGTTATTCTAAAGTCTGTGCTTCGTGACAAGTTGAAAACTATTACCTTTGGCCAT
CTTTCATAGGATGTTGTTCACTCGTATATTTTTGTGGTCAAGTCACATGTATGAACATTA
TTGATGGTCCTGCTTGAACTGACGGTTAACTGCACCTGACAGGTTCCAGTAGCTCCGCTG
CAGATACCAAATGAATTTTCACCTGTTTTTAACCATTCATGGGTGAATGGCTCGGATGAA
TCCACCAACAGTAGCCCCCCGGAGACGGTAATTCCAACTCTGATTACATGGGGTCAAGGA
GGAAATGAGGTGTCTGTGGAAGGATCATGGGATAACTGGACATCAAGGTTTACCCTTTAC
CTGATCTGTTCTTCTAAATGTTTTATCCAGTTCTGAAAATGATGACATGCTAAAATATCA
AAAATCCATATGATTTCTTTCAGGAAGGTGTTAGAAAGGTCTGGGAAAGATCATGCTGTA
TTGCTGGTTCTGCCATCTGGAATATATCATTACAGGATCATTGTTGATGGGGTGCCGAGA
TATGTGTCCGAACTACCTCATGTGACTGATGAAAGAGGGCAGGTGGCCAACCTCCTTGAT
GTCCATGTCAGTAAGGATTATATAAGTCTATTTCAGCATTTTGCTCGGTCGTTCTCTAAA
ATGGCATTCCAGAATGTAGGCTCTTGATTTCACCTGAGAACATCTCTATTTTTGGCAGGA
TTACATTCCAGACAGTCTTGACAGCGTGGCGGAATTCGACGCGCCCCCATCGCCTGAACA
CAGCTACAGCGTGGTGTTCCCAGCCGACGAGGAGTTTGGCAAGGAGCCGCCTGCACTTCC
ACCACAGCTTCTCATGTCTGTCCTTGGCGGCACCGACAACTCCGACGAGCACGCTCCGAA
ACCGAAGCCGCAGCACGTCGTCCTCGACCATCTGTTCATCGAGAAAGGATGGGGGTCGCA
GTCTCTGCTCGCCCTCGGAGTCACCCACCGGTTCCAGTCGAAGTATGTGAACGTCGTGCT
CTACAAACCGCTGATGAGGAGGTGACCGGGTGACCGATGCCGCTGGTGGAAGATGAAAGG
AAGCAGCGGCGTCGAACTAGGACTGATTGGGGGTGAATAAGAGAGTGTAGCTTGACAATG
TACATAAGGGGAGATCAGGAACCATCTGTTTCTCTCTCTTTCTTTCTTTCTTTCTTGAGT
GAACTCTTCTTGTGGCATGAGGTCCGAACGGTCTGAACTGAACTCCGGTGAAATGAAACA
AGAGGCAGTGTTGTGAAAATGTCTGGTCTTGTTTTGTGATCTGTTGTGTCAGACATAAAT
CTAATTGTGTTGTATGTGCTGGAATATGTTGCTGGTAGGTGTGAGCCGTTCAGTAGGATG
GACAAAGTTGAGACGCCAAGGTGGGGGAGACGTAGGTAAACCAAGACACCGAAAGGAAGG
AATTCCATACAAATACGTATACATGTGATGTGGATGCTCGTACAAGAAGAGACCGACAGA
CAGGGAAGGCGATAGCGTCTCGCGATCACCGGGTTGGCAGCGTTTGTCAAAAGGCTCAAC
AGCGACGGGGACGGTGGAGCTTTAATTCCCTGGATGATCTTATATGAAACCTAGACAGAG
AGGTAAACCTACCAATCATCTTCCCACGTTATCGCACAAAACCTCATCTCCTTATAATTG
TGATACAATTGTGAGTTGTGACGACGGGGAAAGTTGTTTTCTTATCTACGAACTTGGGGG
AGAGGGAGAATTTGAAGCTCCACCCCAACATTGTATATACCAAAAAAAAAGAGAGGAGAT
TTCTCAGACAGAGACAAAAAGGGAAAAGGGTGGGAACGGATGATACTTTGCTGTTTTTTC
GTAATATAGTAGCAGATGCTTCGCCGTTCTAACAAGAAATAAACCGCTTTGCACAAAGCT
CTGATTCTCCCAGGCAATGGTACAAGACAAAGCCAGATCATTTATAGAGGCCCGACAATA
TTCCCTCTCTTCATTCTCTCAGCTCTCTGCAACGGTTTCGTGATAAGCCCACGGGCCTTT
TCGTCGCGAGACGGGAAAAAAAATGCCCATTTCCACATGCTTGCTGGGCTAACAGGGCCG
GCCCCAGCAAAACGCATCGCTTTCGGCTCGAAACAGCGCGTTGATAGCCACGTCGTCAGG
AAGAAAAAGATAACGACGACGACAGCGTGTTGAGGTCAGTCTTGACCTGAGCTTCTTGCG
TGTCTCCTGTCCTGTGTGCGATGGACCGATGTCTGATCTGACGGTGACGGAGCAGTGACC
TGGTCCATCGCCTTGACTCGTCCGCCTCTCCTTCCTCCCAACGCTTGAGATAAATGCCAA
CCGCGACTTTGCTGCGACTTTGAGGAGGAAAAACAACGGACCGCAAGGAATTGATTTATA
TCGGACATCAAGTCTCCCTGCAAGAGGAAAAGGAAGATGTAGAAACGGAGCAGAAATTGT
TTGAAGAACTGAAAACAAAAAATAACTCTGGACCGGAGCAAGCTCGTATCGAATTTTCGA
GCCGAACCTCATTGAATGGACAAATTATGTAGTACTGGATATTACCTAATGCAAGTAGGG
TTCTGAATCCACTATCGGCGACGAATCCGTATAATTTTTCTTTTTGAATTCATCTTCAAA
TCCGAATTTTATTCATGTTGTGCATATATTATATCCATGATGATGAATTTTCCACGACAT
TTAAAGGTAGCAACCGCGGTCAGATGCACGGCAAGCCGTAGCGCATCAGACACTTTCCCT
ATTAATGAAACATGTAACCTTACTAGTTGTTCGGTTAACAGTGCTTTATAACATGCAACA
TGGCACTCAAAGTCAAGTAAGCATAATTGCAACTTAATTTGAGTAATGGAAACCGGAAGG
ATAATCAATTTTTTTCATTTTATTTCTTTTATAATCATTGACACACATGTCAACTACTCC
CACCGTTTCCAAATATAACTATCTTTAGAGATTTTAATACTGATTACATACGGATGTATA
TATACATGTTTCAGAGTATAGATTCAATCGTTTTGCTTTGTATGTAGTCAATATTAAAAT
CTTCAAAAGGTTTTATATTTAGAAATGTACCCTGTTCAAAAATTCGTTCGATTAACCAAT
TAATTTGCCGATTAACCCCTACTCATAAGATCACCGAGTAATCGATTAAGTGGTAAATCG
CCCGATTAATTGATTACATGGGCGATTAACTTACCGATTAGACTATTAATCCCGTACTCG
TCAACCAACCGAGCAGCTACCAGTTAACGATTTCCTCAACAATGAAAATGAGGGGAGTAT
ACTAGTTCCAAACTATTCATATGTCTGCCCTTTGTCCGTCTTTTCCCTTTGCAACCCAGG
AAGAATGGAAGGAAATCCTTCGATAACAATTCTTCCTTAGTTGAAGAAATGGTATTCGAT
GCCCGTGGAAACTCTTTCATTTAAACAAATGTTCTTCTTAGGAAGCAAATCACATTTTCT
ATTGAATTGTCCACTAGCCCAGACCTATGTAGATTTAATATTATGCATCACCACATGTTC
CCAAGGACTAGCAAAATCGAAATAGTATTTTTTTTATCATTCTCTTTTCTTGCTTAGCCC
TTTATCTCCTTTGGGATGCTTCACACACCGTTATAGTTTTTCATCGTCGACATGGTAAAG
AATGGACATACAATCACTCACAACCATCATCTACCAGCTCTTCACCGTAGGGGTCCTTCC
GAACTCTCGCTACCAAGTCTTTGTTAATCTACAACCGATGTTATTCTAACGAAAACAACT
TGAAACTCAACGGAGCCTAAAAGTGATTCCTAAACCACTAAACCATATACAAAGAATAAA
CACGGAAACCATGGTTGCGCAATCGGAGTATGGATGGAACCATAGATTGCCAAGGATCCA
AGCAAGGAAAAAGGGCCAAGAGGAGGGAATAAAAAAAAGGAAAGGGGAAGAAAAAGAAAA
GGAAAAAGCAAAAAGCAAAGGGAAACTGGATACACGGCCCGCGGCTCCAGGAAACAAACC
TTCCCCCTCGCCAGCCGCCACCGGTCTATAAAACCCAGCCCACGGGGGCACGCACAGGCC
ATCATTCCCCACCACCGAGCCCGGTTTATTCCCCCCTTCGCGCAGCCGCCCCCGTGTCTC
GTGCGCACCTTCTCGAAGCTTCCTCCCCCATGGCGGACCAGCTCACCGACGAGCAGATCG
CCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGATGGCGACGGTACCCCCCCCCCCC
CCC