Contig Data
morexGenes
Links



Map Locations of contig_159440 (4228 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_159440

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_21345 1 328 bp None Available Available None
MLOC_21344 6 1131 bp MLOC_21344.2 Available Available LOC_Os01g67870.1, FRAME:-1, EVALUE:2e-19, 13101.m07381 protein expressed protein





CDS Structure of MLOC_21345






CDS Structure of MLOC_21344






Contig Sequence (4228 bp)

>contig_159440 4228 assembly3_WGSMorex_rbca.fasta
TCCCAAGCAACACCTAACAAATCTAGTAGGCACCACCCTCAAAGAGGTAATATATGTGGT
TGAACGATGAACTCCTTGCACTATAAGAAATATGCTAACTTGCGACCTTCAATATGGGTC
ACCGAATGATTGTTGATTTCCATTTGCGACCATTTTATGACCAAAAACAGACGATCAAAA
GCTGAGGGTCTCTAATGAACNNNNNNNNNCTTTTTTCTGGAATGGTCGAAGACATTTACG
ACCAAACGAAAGCATTGAAATTATTTTGGTCCTTAGTTGTCTGCCCAAGCCACATCGGAT
CCAATGTGGCAAGTTGACGTGGCAAAATGCCCGGTCCAATTCAGCGTTTAAGATGGGCCG
AGCCCATTAATTCAGCCTTTTTAATATATATTTTTTCTATTGATTTTGGTTAGCTACATG
GGCCTAGCCCAAATTTTCAGCCTTTTTTGTTTTTGGGGTGGTGGGCTTTTAACATTGTTT
GGGCCATCATATCTAGTCCCACCAACAAGATAGGTCCCACTTGTCATAATCTCACATATT
GGACCCACATGATAGAAATTTTAAAACTGCTCAAATTAGTTTCATAAATGTGTCCCATCA
GCCAAGTTCCAATTCACACGTTTCCAAATCACATAATCAATATTTTAAACAGAACAAGAA
TGGTAAAAAAGTCTACTACAAGCTGTACATGTTTAATCCAACCCAGATATGCCTACCATT
ACAATATTACAATCTTTACATTCTATTTAGTACGCCTCGAGCTACTGTAAAGGAGTGTGC
ACAATGTATATTCTCGCAGTGGCGAAGGGCTGGTGACACTTCCGCTCGAATGATTCCTGA
TGTTGGTGTCAAGATTGATCAAGTTGACCTGTAGGTGGTTAAAATATTAGATTGGCAAGA
ATGTCCAGAAGTTCAAACGCATGCATGAAGAAATTTCTGTATGAAATGAAATGTTAATCT
TATTTCTAAGAGTCTGATTTGATATCAGTGGCACATGGGCCTACAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAATAATTATAAATTTAACAAAAATATGTTTCTTG
TATAAGATTTTTCACTCAGGTTAGGTNNAATTCATATCAATTACTTGTTGGACAATGAAG
CAAATCCATTTCTTAATGTAAGTTAAAGAAAATTATATATCACTGCCTCGAAAAACTACA
GTGCTACTATCACTGTAACTAAATAGACAGAACTCATATGGTGCAACATTTAGTGAAATA
CACTAATAAATAGCAACGAGATCTCACCGGTCCAACAATGTCAAAGATATGAGACATAGT
TGTTCCGGGGGCGGCTCCAAGATACAACATACAATGTTAAAAGCATCTTTTATTTAGGAT
GAAATTAAGCTCCACAGTGATGTATAAATACAATATATACAGGACTATAAACCATGGCTG
AGACTGAGACCAGATTTAGAAACTAGCAGTAACACAGAAGACGGAAAGTGTGCAAGATAC
CAAAGCCATAACATAGGGACAAACAAATCCACATGACAAATAGAAATGTACACCAAACAG
TGCACGATACATTATCCAGTTGACCTTTGATACATACGATTCAAGAACAAAAGTTTGTTT
CCTTAGATAATTCCAGTATCTGCACGAAAAACATGGCATGCCAATAAAATGCGATGTAAA
CTGAATGTAGATGAGGTGAATATGTTTCTAATGCAAGCTAGAAGTTGAGATACACTTGCA
AGAGGGTGTGGAAACACAACAACAGGTGGTGAAGTTTCAGCCGCTTATGTTGCGCTATAT
AAAGGATGCATTCAAGTTACTTGCAAAAAATGTTATATTATAATACATCCGCAATTTAAT
AGAGGCAAAAGCCAAAATCTCAAAGAGAAAAAGGATAAATGGCTGTTATATAGCGACTTT
GAGCATGTAATGTAAGGTTAACATTGCATACATTATCAAAATTAGTTTCCATTACTAATG
CAGACTTTATAGCTACGCATCAGAAAAGATGTGATTCCATGCTCAAAATATTACCAGCGA
TTGCAGCAAGGGTCATATCATCTGAGTAACCACCATTTTTTAGTGCTGTGACTAAACCAT
ACAGGTCTTGCCGGAAATCATCAGCGTGCATCTAAAATAAACTTGTCTTAGCACCAGTAC
ATAATCAAATCGAAGTTTATACAGAGCAAGAACTGAGAGTATATATTTTATTGGATCGAA
CTAACTGCCCTTGTTACTCATATTTTGTTGCAAATCCTACATATATTCACCTTAGACAAG
CCATGACCACGCACAATGTAAGCCAAGAAAAAAAAAACAGAGGGCAACTTCGAGAACGGT
GATAGAGCACACGAGCTCGCATGCTCCCGCTCGTGTACGAATGGGACAGCGGCGCGTGGA
GACGTGCATTGAATGCAATCGTATATGGTAGGGACGCATACACCACGTCCAAACAGTGGT
GTACGGTTACACTGCCGTGACGACATGATGAGAGTACCTCGTGTCATGTTCCCTTGGTAC
ATGAAGACGTACAGATCAAAAAAACTCATTACAAAATCCAAAGTATTTATTTTCAGATTC
TGTTTTTCTTTTGAGGTAAATTTAATTTCAGATTCTGTTTTCAAAAGGTGTTTACTATAT
GAAAACATAGATGTGCATTTATAAGCTTTTTTAAAAAGACTCTTTTATGGTTTGTTTAAA
ATTCCACCTCACTAGTGTGGCCATGCCGAAAATTTCAAATCTCATTTCTAGGTACAAGTA
TATCATATTATTCCGCATATCAAGATGTGATTAGCCCCAACAATCATACCAGACAAACTA
TCTAGAACTACAAACGATTCACACACTACACAAGTAAACTTAAGCGGGACCATCATTCTT
CAGGCTCCTCAAGAGCAGCCCGTAACACATCATCAGCCACACTACTCCCATGCTCGTCCA
CACACCAAAAGAAAAAGAAAAAACTCCCATGCTCGTCATGCAAAGGAAAGATCTCGTTGC
GCAAACGAAAGATCTTGAAAGCCCTTGCTGTCAGCGATGAACAAGGACACCGTTTTCACC
ATGTGAGCTCTGAATTTCATGTTCAGCATGTGAGCTCTGAAGTTGATGCAGGTAGCGGCA
GTGATCCAAGGGATGTCGGCTGGGTGTGCGAGCGTTCGCTCCCGGATGTACGTACGTGCG
GCCGTCTGTAACTCTAGTACATTACATGTTGCTATAGGATGAAGACACCGTCGCTACTAC
TTGGACGGCCGTCAACGGCCCCGTATGCTTCCCGTCCGCGTCTCACATTAAATAAGCCGG
CGTCTATGCTCTGGGATACCATGTGTGTTCCACATCCCCATGCAAGCGGACGACTAAGGA
TACCGTGAGCAGGCGAGCTCGACCACACCAACGAATTTCCGGGACAACTTCATGTTACAT
TTGTGTCAACACGGCTGAAGGTAGATTGATGTTCCAAATACAAAAACTAGCACTAGCACA
CATGCATAACATTGCTCACTCTCTGGGACAACTTCCACTACAGAAACTGCAAACATCAGA
AATTTAGCAGCCATGTGACAACCCCATCCAGCACAATTGATAGAAATAGTAGCAATCAGG
AAAACTCCGCTCCTATTATATCAGGACCAAGAAAGGCGCTTGTACTCATCCAAGTCCAAT
CATTCACGACCCCCAATCGTAACGAAATTCCACCACGGTATAGCTACGCACGCTCGCAAA
AACCATATCCCCCAACGGAGCATCCGCGATTACCAACCAAGCACGGAGCGATCTACGCCA
GAGCAGCCTAAACACCACCAAGGCTAGAATTACAGGGGCAGATCGCTGATCCGGGCGACG
AATCGAGAGCGCGAGCAAAGGTAGAAGGACGACAGCATACCTCGTTGTAGTCCTTCTCGG
CGACCTTGGCCTGCTTGAGCGGCTTCGCCTTCCCTCCTGCAAAACAGCCCCGAAACCGGA
AGACAACATTAGGACGACCCCAGGGGACAAAATCGGTCGGCAAAAAACAACGACGGCATC
GATCTCGTGTCGATCGGCGGGAGCGCGCGGACAAACCGTGGTGGAGATGGAGGTGATGAG
CACGAGGGTTTCGCCTCGAACTGCTGGTGGTTTGGATCTGGGGCGCGAGGGCGATGGAGA
GCTACTGGAGAGGGCGGAGCGGAGGAGAGGAGGGGATCCAATGGTGGCCTTGTTGCGGAG
GACCCCCAACGGAGCATCCGCGATTACC