| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_159403
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_21290 |
1 |
540 bp |
MLOC_21290.1 |
Available |
Available |
LOC_Os06g12080.1, FRAME:-1, EVALUE:6e-56, 13106.m01312 protein mTERF family protein, expressed |
| MLOC_21289 |
1 |
1553 bp |
MLOC_21289.1 |
Available |
Available |
LOC_Os02g14980.1, FRAME:+1, EVALUE:0.0, 13102.m01669 protein calcium-binding EF hand family protein, putative, expressed |
| MLOC_21288 |
1 |
344 bp |
MLOC_21288.1 |
Available |
Available |
LOC_Os02g14980.1, FRAME:+3, EVALUE:3e-30, 13102.m01669 protein calcium-binding EF hand family protein, putative, expressed |
CDS Structure of MLOC_21290
CDS Structure of MLOC_21289
CDS Structure of MLOC_21288
Contig Sequence (9855 bp)
>contig_159403 9855 assembly3_WGSMorex_rbca.fasta
TCGTCCTCGTCCTCGTCCTCGCCGTCATCGTCGTCGGCGGCGGCGTCGCGGCCCATGGCC
GCCTCCTCGCCTCCGGCGGCCTCCCGGGGCAGGGGAGCGCGTCCGACGCCGCCGTGCTCC
GCCTCCCGTCGGCGGGGCGGCTGGGCGGGGAGGCTGAGGAGGGCGGGTGCGAGATGACCT
ACGGCTTCCTGCCGTGCACGGAGACGGCGGGGGGCAACCTCTTCCTCGCGCTCGCCTACG
GCTTCCTCATGTTCAAGTCCGCCACCTACCTCTCCGCCGGCAGCGAGCTGCTGCTCGAGA
TCCTCGGCCCGGGGATCGTCGGCGGCCTCTTCCTCCCCATCCTCGGCGCGCTGCCAGACG
CCCTGCTAATCCTCGGTTCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTGT
GAACTCTGTTCGTCTCCTTCTTTCTTTCTTTTTACAACATAATACTCCCTCTGTCCCAAA
ACAAGTGTGTTAACTCCGGTATAACTTTGCACGAGTTAGTATAAACTTGAGACATTTGTT
TTGGGAAAGATGGAGTAACTCTTTCATCTCTTCGCTTCGCTGTGTCCGTTTGATGACTGT
GTTTTAGTTTTCGGATCGCTATGCTCCCAATCGATAGAAAAAAAAACAATCAAATGTTTA
TGATTCAATGGATAATACTCCGTCCATTCACAAATACAAAATGTTTTGGAATATGGACTA
AGTACGGATTGAAATGAGTCAACAAACACACTAAAATGCATCTACGTTCATCTCCGAATC
AGAAAAAAGTTAGAACATGTTACAATGATGAACGGACGGAGTATCATCGTGCAGGGGTAT
TTTGGACTTTTTCCTTCTACAAAATAGGATAGAGATGGAAGTCCAAACAATAGGAAAGAG
ATTATTTTTACAGGTGACTAGCTAGGAAAGTGATTATTATTTCCTTATTAGTCTCGATAG
TAAATAAGGAAAGATAAAAATTCCTAATTAATGTTATAGTAGTCAATCTTGGACTGTCTA
GCTTCCAACTTCCTTTTCAACACAATGAGAGAAAAGAGAACTGCTATACGTACGACTATT
TCTGTACGATTTTCATACAAACAGTGAACGGGAGTCTTCCCTTCAATTCAATGGAGGATT
AGGATAGCGTCGGACAGAAATCGTACACAGATTGATCGTATGCAGATCAATTCCGGGTAG
AAAATGTTCTAAAAACACACACACAAGGGAGCAACTTGTAGTGTTCTTTTGGTAATGCGT
GTATTCTGATACGTAGAACAGATTAATAATGTCAATTGTTAATTACTTAAAAAACTGTCA
CACTTATTAAGAAATACACCGATGATATAACATATGTGCGTTTTAAGTACATAAGTATAT
TGATTATTAATCTTGTAAGTAATTTAGACAAACTATATTTCTGCTATATTTGCACCACAC
ACATACAAAAAATGTCAATATGCATATTATATAAAGCACAATACTTAGATATTAAATATA
AATCATATGCATGTTTTTTGTTCCATTTTTTACGAACACTCGAGCAAAATGTAGATGCAA
AATGCATAATGTGTCTGTTTCTTGCATTTCAGTTTCTGGCCTCTCTGGCACTAAGGAGGT
TGCTCAAAGTCAGGTTTTGATCGGAATGGGCCTGCTGGCGGGATCGACGATCATGCTTTT
GACCATACTTTGGGGATCTTGTGTTATTGTCGGTAAATGTGATCTGTCAGAGAATTCAAC
TACAGTTGATTCCCAAGATACCAAAGCCTTCAGTCTTTTGGGTATGTTCTTATTTCTCAA
ATTCCTGTCTGGGGGTCCTTAGAAATTGAATGTCATCAAGTGCACCTGACATCTGGACTT
CCAAACAAATCGTTGAACAATATTACCGCCTAATAGCTTCGTATATTTAGTTGTGATGCT
CCACATCACTACACTAGTTTAGATAGTGGCTCTAGTTCTTCAGTTCAGGCTTCACGAAAC
TATTTTGAGGAAACACTTCCTAAAGCTATAGGCGTTCGTTCAGCCATGCAGGGTAAGAAG
TTCTGATTTTATTTTATTTTACCTCTATATATCACAAACATGAATTTTGGACATGCTATA
TTAGTATGATGGCTGGGAATAGTTATCTTCTATAGCATAATAATTAATTTCCATGCCTTG
CATCAGTACATACGCGATCCATTAGATCCATTCTGATATAACATTTGTGCTGTTAGGCTC
TGGTGTTTCAACTGATTTGCAGACCAGCTATGCAGCAAGAATCATGGCAATATCTGTTCT
CCCCTTTATTGTTGTTCAGATACCACAAATTCTGAAGCTCCAATCTGGTCATCGCTTAAC
TCTACTGCTTGGGCTTATAGTTGCAGTGCTACTTCTGCTTACTTATTGCCTATACCAGGT
ATATACTGACCTCATGGGAAAATGAACTCTACGCTTTCCCACTTTTTCTGCTTTTAATAG
TGAAATATTTCACTCTATGTTAGCTTATGTACATTTCATCTGAAAAGGTTCTGAATTTTT
TTATCAAAAAACTTTATAATTTTTTGGAGTTAATGACTTTTAGCAAGAACAAATGGTGCC
TCTCTACCACCTATCTGACTTTCCTCTAGGCATTTTCATTTGGTCAGGAACTAAAATCTT
GTGGCACATGTTCATTTACGTGTTGCTAATTTTCCAGGGGCAATTGCACATTACTTACGT
TCATTATCATCTTATTTTGATCTATATTGCCCCATTGAACAATACTTGCATCTTCCACAA
TCAGATCTTTCAGCCATGGATCCAGAGGAGAAAATTAGAATATTCAAGACTGAAGCATGT
AATGTCTGGGCTTCTGAAACATGCTCAAATGCATACTTTTGGTCACCTTATTGATGATGA
TGGCACACCAAATGTTTCTGTCATAGAGAAGTATGCCACTGGTTTGCATTTCGGTTTTAG
TTACGTTTTCATCCCAAAAAATATATTCTAAATTATACCGTAAAAATTGGCAGGTTATTT
CACAAAATTGATCTGGACAATGATGGAATGATAGGGCGTGGTGAACTACAAGCTTTCATT
GTTGGTGTGAATTTTGAAGATATTGAGTTGGATAGTAACCTAGCTGCAGACCAAGTCATG
GCTGACTTTGATAGGTCTCGGAATAGTTCCATTGAAAAGGGAGAATTCGTTGATGGCGTC
CTTAGATGGCTGGAAGAAGCTAAGCGTGTTGTTGCTGGTTCTGGTGCCTACTCAAAAAAG
TTTATGGATGATTTTCACATTGTAAGTTTATAGTCACATGTTTATGCTGTTACTTTGTCC
ACAAAGATAAATTGTGTCATCCTACAATTGTGCAGACAACAGGGGAAGAGCATAATGCAC
TGCTTGACAAGCATGAAGAGGATGATGAATCTATTGAAAATCCAACCTGGACATGCTTCA
AGGCTATTTCACTTTTGCTTCTCGGAACTGCAATGGCAGCTGCATTTGCAGACCCACTTG
TTGATGCTGTGCACAACTTTTCAAGTGCTACCAGTATACCGTCTTTTTTCATTTCCTTCA
TTGCGATGCCCTTGGCTACCAATTCCAGTGAGGCTGTCTCAGCAATTATCTTTGCCAGCC
GAAAGAAGCAACGCACTCTGTCTCTGACATTCTCAGAGGTATGTCTGTTGGATACCTTAT
GTTTGCTGTTGACTATTGGAAGCAGTCATATAAATACCTTCGTTTTGATTGATTTCTTAG
TCTCAATGGTTTTTCCTTTTTCCTCTAAATTTTGCTTGTACTTATTTCTCATGTACTGTC
AACCTAGCTGTTTGATCACCTTATATATTGCAAGGTATTCCGTAGAAGAAATAAGAAACA
GTTTCCCAGAGAACTGAAAGCTCTTACATATTGTAGACTTAGGCTTCCTAGGTGCTTTGC
TGTTTCACTGGATTCTATTTATTTTTCTTGTTCTGTGCAATCATTTCTTTTTTTGAAGCG
GATATAGGATTTAAGGTGTATAAATATTTGTTTTGTTTTGTGCAGTCGCTTTTAGATATA
TGAGCATTTTGCTGCATTGTTTTCTTTGTCAAGCTGCAAACAAATATAAATATTTTTTCT
TCCTCTATTTTGGATTCTGTACAAACATTAGTATAATTTACAGAACATGGTAATAACGGG
AAAAAAAATCAACACTCTTTAAACATAAGCACATCACATCGTCTTTAAACGTAAGCACAT
CACATCACAATTCACAAGAAAGCTTAAACTGAGCCCTAGAAGCCGTAGACTACTTTTAAG
GAGTTAATACCAAATGAATGTCGTGATGGTATCAACGGATTCAGATCCAAGTTGCTTGAG
TGCAGTTTACAGGGAGATATTTGATTAAAAAACATATTTCAAATAATTAAATTTGTTACT
CAAATGCGAATATGGAAAATCTGATTGATTGAATGATTTTTGGCATCACTACATAGAAGT
CACTCTCAGATCTTTGTGCAAAATCTGGTTTCATTGAATGATTTTTGGCATCAGAACGCA
TAAGTCATTGTCTGGTCTTTGCAGTCGCACATGGATGTATGTTTTTCAGGGGTACATGGA
TGTATTTTTTCTTGGAGGGGAGTACATGGGGTGTATGTTGTATACAAGATTGACCACATG
AAAATGGCGGCAGTCTGATTATTTCTTACATATTTCTATTTCTATTTTATTTTTATCAGC
GTGCCATTGTAAAATAGCGTAGCCATATCTTTTTCAATAAAAATGGCAAGAGTTTCTCGT
TTTCCTTTATTATTGTTTGAGTTGAGGATGAGCTTTTGCGCTTATCCTCCCCCCTCCCCC
TCCACCTCCACCTTTCCCTTACCATTGGCCATAAAATGGCAAAGCTCTTGTGTGGTAGGG
AAGTATGGGGCTTTGCTCGCAACCCAAAATCTGATTTATACTGCAACATTCGTAGTGCTC
AGAAGTTCCAAAAACAAGAATTTCATGCGGTGTCGTCATTTCAACTGCAGGTGTACGGTG
GAGTGACCATGAACAACACGCTCTGCCTGGCCGTGTTCCTGGCTCTCGTCTACATCAGGG
GCTTAACTTGGGACTTCTCATCGGAGGTCCTCGTCATCTTCCTCGTCTGTGTCATAATGG
GACTCTTCACCAGCTTCCGGACCATGTTCCCCCTGTGGACGTGCTTCGTCGCATTCCTTC
TGTACCCGCTGTCGCTGATCTTGGTTTACATCCTCGACTACAAGTTTGGCTGGTCGTAAA
CCTGACTTGAATGGTGATTAGTTGATAGGACTGATATACGAGGGGTAAATGTAGGCATGG
ATCACTTCTTTTACTGCTTGTAAACCTCATCTGGTACGTGTTTCCGGTTGGATGCGGGCT
ACGCGCTTTGACATGTTACATACTTGGCCATTGCTAATAAGTTAATATGAACTCTGATGA
GAGGAGATGATATCTCGTGTGTTAATGCAGGAATTGGTTGCACTATGATTTGTCATACTT
CTTCTGTCCCAAAATATGTTGGGTTTAGTCCCACATCGGTTATGGAAGGAGACATAACAA
GATTTATAAGGATGAGGGTGTTCCCTCGTAACAGGTTAGTCTTTTGAGGGGAGAGGGCCT
CTTCGGTTGGTCCTGATGAACGCATATGGGTAGGAAACACTGATGTTAGCGGACCCGGGA
AGCTTTATGAAGGAGTACAAACATGAATACTTGATTAATAATCTGAGAACTAAAACTGAA
ATACATATATCTATCGTGTACTCCCCCGTTCCTAAATATAAGCCTTTTTAATATGTTAAG
AGTGTACTAACAAAATTGATGTGAAGTCTTTTTCCATGCACGGTTGTATGTTGAGGTGGT
ATGTTTATTTATTTATGTTTCAAGTTGGTATGTTTATATATTGAGAGAAAAGGTCTGTGA
ATCACCTATTTTGTTGATATAACAGTGTTTAGGTTCCGCTCGTCACCAAGACATGTTCAG
TAAAATACCATTCAACATGTGCACCAGCACCACTATTACTTCCTCAGCCATCCCCTGCCA
GACTAAATCTACCAACCAAAATTTGTCCGGTCCGAACTCGTCGTTGCTGAGCAAATCGAA
TCAACTATCGGAAGACCTTGGTTATAATTTTTGCCAAGCGATGCCAACCGGTATGGATAG
TTTTTCAGAAGCTCCTCCATTTCTTCGCTTTCAGGCTACTAACTGGTGCCTCAAAAAAGC
AGTTGTTTAAGACTCAGAACGAATGTAAGAGCAAAACAAAAAATACAATACTGACGAATA
AGGCCATTAGCTTACCAAAAAGAGGTGATCTGTCGGTGAAGACAATGCCGCATCAGTGTA
GCTCAAAGATTGAAATGAGACTAGATTTCGGATTTTCAGTTTTAAAAAATGGATTTCGGA
TTTTAGAATTTGTAGGCTTAGAAGTACATTCATCATATGAAGCATGATGAGCATCATCAT
CATCATTAGGCTCGGTCTCGGTTAGTTAGGCTCGGTATTTCGATCGTCGGTTTATATGCC
CACCCCTCATCATCATCATTGACTACATACTCAAGTTCCTGCATTGCAACTCTTCAAGCG
TGGAAGTTGGCTCTTCTCTATACATATTTCGGGGTCAACTTCCCAATTACAGGAGGAGGA
GGAGGAGGTCCTTGTAACTCAGCATTTAATCGTTTTTCTTTTCATATTATGAATAAATAA
TCCAATTCCTCTAGATGAGCCACAAATGGGTTGCAGAGTATTTTTCTTTTCCATCTCCGC
TACTTCTGGACTTTGTGCCATATCATTCAATTCGACATGTTGCAGCATTATAGGCGTAGT
GGAGATGCCAAAGAAACATTTTGTCATATTAGTATTTCAATGGCAAAGAAAGTTATCAAT
TTGTATTTTTGTACATTCATTATGTGAAAACAAAATAGATGGAAGGCAAAGACAGCATAT
AGCTTTTATTTATTCAAATCTGCAACTTGTATCAAGATTCTCTGAAAAAGTTACAAGGAA
GCTCTCTTTTTTAAGTGGCAAACTGAGACTGAAAACTAAAATGGAGCCCAACCAGACAGG
GACTGCAACCAAGAGATGTGATGTAGCAACCTGGAGGGTGTGCTCAATGATGATCATACT
TGATCCGCTTTCTACAGCAAATAAGAGATATAGAAGATGCAACAATAGCTGCAGCCTCTT
CATAAACACAAATACTTCATGGGCTCGAAAAGCAAAGACGCAAAAATGAACATTTACTCT
CTTTTTCTCCAACACAATACAGTTGGAGACACTCATACATACGCATGTACACTCATGTCT
ATGAACGCAGGCATGCACACCCTACCTCTATGAACACCTCCAAGAGTCTAAGCCGGCACA
TCATATTGAGGTTTCCGAAGTCGCCACATACTTCTCCGTTGTCGACGAGAACGTCTCCTC
CCACTGAACGCAGATCACCAAAAAGTCTGAAATAAATCTAGAAAAATGCGAGAATCAATG
TCAAGTTTAGGACTAGAACTCTAGTGGTTGGGGATACCAATGTCCTCCAAACCAACCAAT
CGCAAAAGGTACATTTACTGAAGTACTAACTTTTGAGACTCTAAACGGCAACACCTAAGC
TCATGGTCCTGTTGTTTATCAGCCCATTTGTTATTTCATTTAGCTTATATTTTGCAACCA
GCATCAAATTAGCTCAGTATTTCAATACTGAAGTCTTACTCCCTCTGTTCCACAATATAA
GAATTTGCAAAAACGTCTTATATTATGGGACGGAGGTACTACATGTATACCCCCAGAGAA
CTGGGAAGTGGCAAATCACAAAAGAAGCAAATTCTGAATATGGTAACCATGATTTCAACA
ATTGCAAGTATCTAAAATAACTTGAACCACTACAGTGACAACAATTATAATATGATCAAA
TGAAAGCATCACCACAGAGCAATTCCACATCTACTATGGCATCAGGTCGGGAAGCATTGA
AGTCAAGTCTATCTCGAAATTTATCCATTAGCTGTGTAAACCTAAGGTCAAATTAACTGC
ATATAAATCAACCATGTTCACTGGAAATGGCACTCCACAATCCATATCTATACAGATGCT
GATCACATTCGTTGCTCTGCTATTTAACATTTGAAACATGGGTCAAGGGGGTGACAAACC
TTAAAATGCTATTCCAACACGACAATCCGGCAACGTGCTCCCACATCAAGCATGCACAGA
GTCTCTTGTTGCATTTTCTCTTTTCAGGTAGAAACTTCATCCGGCACCTTCTCAGCACAG
TAAGATGCATAAGTCGCAGCAAGGCCTGGAATACTCTTCTCATAAGGATGCACATACTTG
TACAGAAACTTCTTCTCAGTCAGCGTGATAACAGTATAGAAGTCAAGCTCAGGATAAAGC
AAACCCTTGGCGTTGAGAATATTTAGCAAGGAATGCCGTGGCAGCAACCGGCGCTCATAG
CTATACATGACCAGCACTGGCCTTCGAGCAATATAGGGTATCTCCAGCCCAACATCCCTT
GTCAAGAAATTCACAGTTGTCTGCATCCTTTCCTCGGACATGGTGAGCATACTCGGCATC
TTCCTCACAGCGGTCAACACATCATCCTGTGACCAACCAAGCATTTCAAGGATCCCCATT
TTCCGGTCAATTTTCTCCTGGCTCTGAAACGCAAACGCCATGAGCGCATAGCGAAACATT
GGGGAATCCTGGGGCACGCCAAGCTTGTCGATGTACAGCACGGCATTCTGGACGTACTCG
GGGAGCCTAGTGAGCACCCGGGTAAGGTATGTATCTGAAAAATCTCGGACGCTTATCCCG
CATTGCTGGAGAAGGGCCAGGTTGGGCTTACCGACCTTCTCGAGGTCCGCTGCGAGGATG
CCGCCGTTCACCTTCATGGCCCTGAGGAGCCTCTCGAAGGAGCCGAAGACCGGGAGCCAG
AAGGCGAGGTTGGGGCCGAGGGAGGCGGTGCGGAAGGAGGCGCCGGCGAGCGGGATGAGG
CGCGCGATCTGGGAGCGCTTGAGGCCGAGGCCCGTGAGCTCGGCGACGCGCTTGGCCAGG
TTCAGCTCCACATCGGCGCAGAGGAACTGCGGGTCGGCGGCGACGATGGCGGCGGCGCCT
GAGGGGGAGATGTCGAGCGCGGCGAGGAAGGCGAGGACGGCGTCGATCTTGGAGGAGGAC
TTGAGGTGGGCGAGCTTCTTGGACGCCTTGCGCGCCTTGGGCCGGGAGAGGCCGCAGGTG
GTGGCGAGGTAGTCCTCGACGGCGAACGGCTCTGGGGAAGCGGGTGCGGTGGCGGCGAGG
AGGCGGTGGAGCGGGAAGAGGGGGGGGAGGGAGGGTGTCGGGACATGAGATGCGGAGAGG
AAGATCTTCCGGAGATGGAGCATGGCGTCGCGGCGGCGGCGGCGGCGGCGGATTGACTGC
TGGGAGTTTGGGGATGTTGTAGGCTTGTAGCTGTAGGGTTTTTGCACTCTGAGTGGCCGG
TTTCTGTTGGTTAATCTTTTTTTTTTTCGGGAAAATCACCGAGAGCTTTATTGAATGAAA
GCGCTCTCTCAACAGTCGACGAGCACGATTAAGAACAACTCTAGCGGACACCGCATCCCG
TCGGTCCGCAAAACGCGTTTGCAGGTCGCGTGAAACAGCTTTTGCGGGCTGGCCTGGGCT
GGCACAGATGCAGATCCCTAAACGGATTCGTAAAAACTGTATATTCGCGGAATATTTCTA
ACGCAGCATGTCATAAAAGAATTCTAAGTTCTTTGTGCAGGATAACGCAGCATGTCATGA
CGTTCTTTAAGGTTCTCTTATCCCAAAAACGAGCAGGACCACGGACAATAGCAAACCTAG
ATTGCAAAGCACCGAATGCTCTTTCAATGTCTTTGCGGGCTGCCTCTTGCACCTTTGCAA
ATTCACATTCTTTTT
