morexGenes - Barley RNA-seq Database

Contig contig_1593995

Source Contig contig_1593995

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1593995 (2431 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1593995

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21284	2	1491 bp	MLOC_21284.2	Available	Available	LOC_Os01g43220.1, FRAME:-3, EVALUE:9e-120, 13101.m04460 protein chitinase domain-containing protein 1 precursor, putative, expressed
MLOC_21283	1	267 bp	MLOC_21283.1	Available	Available	None

CDS Structure of MLOC_21284

CDS Structure of MLOC_21283

Contig Sequence (2431 bp)

>contig_1593995 2431 assembly3_WGSMorex_rbca.fasta
TCACCAAGCACATTGGTGTTGATGCTTTTTATGTGCGTGCTGGTGTGCAGGATCATGTAG
TTGCTCTTCAGTATGTGCCTTCCGAGTTACAGTTGGCGGATTTCCTAACGAAGGCCCAGA
CTAGAGCGGCTTTTATCTCTCCAAACTCAATGTTGTTCATCCACCATGAGTTTGAGGGGG
GGTGTTAGAGTATATATAATATAGCCATGCCCATTGTATAAGGGGTTATCTGCATATAGT
CCACACCTGTACATGTATATATATNNNNNNNNNNNNNNNNNNNNATACAAGTTGCATATT
CCTAACAGTAAGGAAGCTTGACATATCAGCGCTCACAATGCATACAACAAAGAGACATAC
AAGTATCTTTTTAGTACTTCACATCAGAAGTTGTTTAAGACTAACTGGAATTGTGCAAAA
AATAACATTCATAAATAGATATTTCTACAGAACATCAAAAAAGTAGTCCAAACCTTGTCC
AATTTCCCAGATTGAAAGCCCTGTCCCCCAATCTTGCGCTTCATCCAAACGTACAGAAAG
AGACAATAGCGTTGGATAAAATACAGCATGCCTCACACCTTTATCCGAATATATAAAAAA
ATGCTCTGAACTTTTGTCATCCCATTGCAAAGATGGCTTATACTTCTCAAGTAAATGAAT
GAAATCCCTTCCAGTAATAGAACTACCCCCACCACCTGTGTATGTAGATTAATAAGAAAC
AATAATTCCAAATTCATGCCAAACATAAGCTATAAGCAAGAAACATAATACACCGTGCAA
CTAACAAAAACCACCTGCTACCAATGGTAAACAATATTCCTACTGAATTTTGAGTGTAAT
GTCATAATATGGGTCAATTAGTGACATTTCAAGCAAACAGGACACCAACACAACATGGGT
GGCCTCTCTGTTTCACATGGCAATGTAAAAAGACTCATTTCAACGGCAAGGGGGTGAAAA
TGAGTATAAGTATATACCTTTAGAAAATAGAAAATCATTCCCATAGAAATTCATCCCAAG
GAATATCATGTGAGAATGGCCTTGAGAAGCAGAACCCTTGGCTTGAAGAAGTGTTGTTAA
AGAATATTGTATCCACTTCAGAGGTGCACTGGGGCCAGGGTTTTGTGGTCCAGAGAAGTC
ATATGTCATAAGAGAAAAACCATCTACTGAGTCAGCCAACTGCAGGAGATCTTCTGGTCC
AAAGTCTTGATTGTTGGGCCCTTCCATCCGTGGAGCTGGGATAACATAAATTAGTTCCAA
ATGGTTCCTGGTACTTGATTTTGAACTGAGAGAATGCAAAGCCTCGCCCAGCTGCTTAAC
AAACTGAAGTGCCTGTGGCATGCAACAAAAATGTTGAATGAATTAAAAAATGGCCCCAAG
AATGCTACTCCCTCTGATCTCAAACTGCTGTTACTTTAGAATTCATGCAGTCAAACTTTG
ACAGTTATTATATACCAAATGATCAACATTTATGATATGGTAACGGTACTTTTTCTTGAG
TAAAACGGTAACGGTACTAGGAGATTACTCCGGAAAAGTATATTTATATCATAATTCTTT
CTTATTTTCAACTAAAATATTTTAAAAAAAGTAATGTTCGATTTGGCTATGCTATGCTAT
GCCTCAGCAATCTGGAAAACCAGGGTGCCGATGTAGGTTAAGTTCTTCCTTTGGTTAGCT
ACCAAGTCTGACCCAAATCCTCGCTTGGATCAGCTCATCAGGTAGCATCCCCATGACAAA
CATGATCTTTACGGATTGGCCTGGTCCTCTATGATCGCCACGGTGCCAACATTTTTACGA
AAGGGAGTGGCTTCCATAACACAATTTGACATCTCACTTTTGCCACTCTTAGCTTTGGAC
AATACATCACGAATGCCATTCCGTGGCAAAAACAATAATTTTTTGTTTCACTTTTGCCAC
TCTTAGCTTTTGACGATGTATCACAATTGCCACTCCAGAATTATTGTTTTTGCCACAGAA
TGGCAATTGTGATGTATTGTTAAAAGCTAAGAGTGGCAAAAGTGTCAAATTCTAGAGTGG
CATAAGCAAAGTGGGCAAAAAATGGAGTGGCAAAAACAAAGTTTTCCCTTCATTGATTGG
TCAATCTGGAAGCAGCGGAATCACTTCATCTTCAACAGCAACCACCCAAATGTGCAGCTG
CTTGTTAGCATTATTGAGGAGCAGGCGCATGCATGGGCTGGCAGGTGTGTGTGGCCTTTG
GTTGTCCTGCCTACAGGTGCTAATTAGCCATGCACCTCTCGATTTAGTAATCCTAACCAG
GATGGGAAACTTTGTCAAATTTCTTTACTATCAATGCAACGACGCACAGCTCTTTTACAA
CAACGACAACCAAGCCTTTCAGTCCCAAACANGTTGGGGTAGGCTAGAGTTGAAACCTAT
AAGATCTCGAAGCCAAGTCATGGCTCTGGAA